RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 KRTAP2-4Q9BYR9 128 aa6.08□□□□□ -1.44
VIM-206ENST00000487938 KRTAP2-1Q9BYU5 128 aa6.08□□□□□ -1.44
VIM-206ENST00000487938 KRTAP4-3Q9BYR4 195 aa5.96□□□□□ -1.45
VIM-206ENST00000487938 KRTAP9-2Q9BYQ4 174 aa5.94□□□□□ -1.46
VIM-206ENST00000487938 FCGBPQ9Y6R7 5405 aaPredicted RBP5.93□□□□□ -1.46
VIM-206ENST00000487938 LOC100996750A0A140TA64 210 aa5.93□□□□□ -1.46
VIM-206ENST00000487938 MUC12Q9UKN1 5478 aa5.89□□□□□ -1.47
VIM-206ENST00000487938 MT1GP13640 62 aa5.86□□□□□ -1.47
VIM-206ENST00000487938 MT1MQ8N339 61 aa5.81□□□□□ -1.48
VIM-206ENST00000487938 KRTAP19-3Q7Z4W3 81 aa5.81□□□□□ -1.48
VIM-206ENST00000487938 CRCT1Q9UGL9 99 aa5.77□□□□□ -1.49
VIM-206ENST00000487938 KRTAP4-6Q9BYQ5 205 aa5.76□□□□□ -1.49
VIM-206ENST00000487938 SPRR2FQ96RM1 72 aa5.68□□□□□ -1.5
VIM-206ENST00000487938 DSTQ03001 7570 aaKnown RBP5.66□□□□□ -1.5
VIM-206ENST00000487938 MACF1Q9UPN3 7388 aaKnown RBP5.62□□□□□ -1.51
VIM-206ENST00000487938 LCE5AQ5TCM9 118 aa5.62□□□□□ -1.51
VIM-206ENST00000487938 SYNE2Q8WXH0 6885 aaKnown RBP5.51□□□□□ -1.53
VIM-206ENST00000487938 KRTAP9-6A0A140TA67 174 aa5.51□□□□□ -1.53
VIM-206ENST00000487938 KRTAP12-4P60329 112 aa5.42□□□□□ -1.54
VIM-206ENST00000487938 LCE3BQ5TA77 95 aa5.41□□□□□ -1.54
VIM-206ENST00000487938 KRTAP5-9P26371 169 aa5.4□□□□□ -1.55
VIM-206ENST00000487938 LCE1AQ5T7P2 110 aa5.35□□□□□ -1.55
VIM-206ENST00000487938 KRTAP4-9Q9BYQ8 210 aa5.33□□□□□ -1.56
VIM-206ENST00000487938 MDN1Q9NU22 5596 aa5.33□□□□□ -1.56
VIM-206ENST00000487938 KRTAP6-1Q3LI64 71 aa5.3□□□□□ -1.56
VIM-206ENST00000487938 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.27□□□□□ -1.57
VIM-206ENST00000487938 SPRR2EP22531 72 aa5.25□□□□□ -1.57
VIM-206ENST00000487938 SPRR2BP35325 72 aa5.25□□□□□ -1.57
VIM-206ENST00000487938 SPRR2AP35326 72 aa5.25□□□□□ -1.57
VIM-206ENST00000487938 SYNE1Q8NF91 8797 aaKnown RBP5.24□□□□□ -1.57
VIM-206ENST00000487938 MT1AP04731 61 aa5.2□□□□□ -1.58
VIM-206ENST00000487938 KRTAP4-12Q9BQ66 201 aa5.14□□□□□ -1.59
VIM-206ENST00000487938 KRTAP5-5Q701N2 237 aaPredicted RBP5.11□□□□□ -1.59
VIM-206ENST00000487938 KRTAP6-3Q3LI67 103 aa5.07□□□□□ -1.6
VIM-206ENST00000487938 LCE3DQ9BYE3 92 aa5.07□□□□□ -1.6
VIM-206ENST00000487938 SPRR2DP22532 72 aa5.04□□□□□ -1.6
VIM-206ENST00000487938 KRTAP9-7A8MTY7 169 aa5.03□□□□□ -1.6
VIM-206ENST00000487938 KRTAP9-9Q9BYP9 154 aa5□□□□□ -1.61
VIM-206ENST00000487938 KRTAP9-4Q9BYQ2 154 aa5□□□□□ -1.61
VIM-206ENST00000487938 LCE3EQ5T5B0 92 aa4.99□□□□□ -1.61
VIM-206ENST00000487938 NEBP20929 6669 aa4.88□□□□□ -1.63
VIM-206ENST00000487938 PRM1P04553 51 aa4.79□□□□□ -1.64
VIM-206ENST00000487938 KRTAP6-2Q3LI66 62 aa4.76□□□□□ -1.65
VIM-206ENST00000487938 LCE1DQ5T752 114 aa4.75□□□□□ -1.65
VIM-206ENST00000487938 LCE4AQ5TA78 99 aa4.75□□□□□ -1.65
VIM-206ENST00000487938 OBSCNQ5VST9 7968 aa4.72□□□□□ -1.65
VIM-206ENST00000487938 MT3P25713 68 aa4.68□□□□□ -1.66
VIM-206ENST00000487938 KRTAP5-4Q6L8H1 288 aa4.62□□□□□ -1.67
VIM-206ENST00000487938 KRTAP4-2Q9BYR5 136 aa4.51□□□□□ -1.69
VIM-206ENST00000487938 KRTAP4-11Q9BYQ6 195 aa4.46□□□□□ -1.7
VIM-206ENST00000487938 MT4P47944 62 aa4.41□□□□□ -1.7
VIM-206ENST00000487938 KRTAP20-1Q3LI63 56 aa4.41□□□□□ -1.7
VIM-206ENST00000487938 KRTAP20-2Q3LI61 65 aa4.33□□□□□ -1.72
VIM-206ENST00000487938 KRTAP2-2Q9BYT5 123 aa4.3□□□□□ -1.72
VIM-206ENST00000487938 KRTAP5-2Q701N4 177 aa4.27□□□□□ -1.73
VIM-206ENST00000487938 HMCN1Q96RW7 5635 aa4.2□□□□□ -1.74
VIM-206ENST00000487938 KRTAP5-3Q6L8H2 238 aa4.14□□□□□ -1.75
VIM-206ENST00000487938 MUC5ACP98088 5654 aa3.97□□□□□ -1.77
VIM-206ENST00000487938 LCE1EQ5T753 118 aa3.86□□□□□ -1.79
VIM-206ENST00000487938 LCE1BQ5T7P3 118 aa3.84□□□□□ -1.79
VIM-206ENST00000487938 AHNAK2Q8IVF2 5795 aa3.73□□□□□ -1.81
VIM-206ENST00000487938 KRTAP5-10Q6L8G5 202 aa3.69□□□□□ -1.82
VIM-206ENST00000487938 KRTAP5-1Q6L8H4 278 aa3.65□□□□□ -1.83
VIM-206ENST00000487938 LCE1CQ5T751 118 aa3.63□□□□□ -1.83
VIM-206ENST00000487938 GPR98Q8WXG9 6306 aa3.53□□□□□ -1.84
VIM-206ENST00000487938 KRTAP5-8O75690 187 aa3.49□□□□□ -1.85
VIM-206ENST00000487938 KRTAP5-7Q6L8G8 165 aa3.42□□□□□ -1.86
VIM-206ENST00000487938 KRTAP21-2Q3LI59 83 aa3.41□□□□□ -1.86
VIM-206ENST00000487938 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.41□□□□□ -1.86
VIM-206ENST00000487938 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
VIM-206ENST00000487938 KRTAP5-11Q6L8G4 156 aa3.14□□□□□ -1.91
VIM-206ENST00000487938 MUC5BQ9HC84 5762 aaPredicted RBP3.11□□□□□ -1.91
VIM-206ENST00000487938 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
VIM-206ENST00000487938 KRTAP21-1Q3LI58 79 aa2.97□□□□□ -1.93
VIM-206ENST00000487938 AHNAKQ09666 5890 aaKnown RBP2.84□□□□□ -1.95
VIM-206ENST00000487938 PHGR1C9JFL3 82 aa2.71□□□□□ -1.98
VIM-206ENST00000487938 LCE1FQ5T754 118 aa2.7□□□□□ -1.98
VIM-206ENST00000487938 MUC16Q8WXI7 14507 aa1.77□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 72.3 ms