RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 LCE2DQ5TA82 110 aaPredicted RBP3.73□□□□□ -1.81
HDAC6-228ENST00000486227 MT1LQ93083 61 aa3.69□□□□□ -1.82
HDAC6-228ENST00000486227 MT1EP04732 61 aa3.69□□□□□ -1.82
HDAC6-228ENST00000486227 KRTAP19-3Q7Z4W3 81 aa3.69□□□□□ -1.82
HDAC6-228ENST00000486227 KRTAP9-6A0A140TA67 174 aa3.68□□□□□ -1.82
HDAC6-228ENST00000486227 LCE3BQ5TA77 95 aa3.66□□□□□ -1.82
HDAC6-228ENST00000486227 SYNE1Q8NF91 8797 aaKnown RBP3.61□□□□□ -1.83
HDAC6-228ENST00000486227 KRTAP19-7Q3SYF9 63 aa3.56□□□□□ -1.84
HDAC6-228ENST00000486227 MT1MQ8N339 61 aa3.54□□□□□ -1.84
HDAC6-228ENST00000486227 KRTAP4-3Q9BYR4 195 aa3.52□□□□□ -1.85
HDAC6-228ENST00000486227 LOC100996750A0A140TA64 210 aa3.48□□□□□ -1.85
HDAC6-228ENST00000486227 KRTAP2-3P0C7H8 128 aa3.48□□□□□ -1.85
HDAC6-228ENST00000486227 KRTAP2-4Q9BYR9 128 aa3.48□□□□□ -1.85
HDAC6-228ENST00000486227 KRTAP2-1Q9BYU5 128 aa3.48□□□□□ -1.85
HDAC6-228ENST00000486227 KRTAP9-7A8MTY7 169 aa3.45□□□□□ -1.86
HDAC6-228ENST00000486227 MT4P47944 62 aa3.44□□□□□ -1.86
HDAC6-228ENST00000486227 USH2AO75445 5202 aa3.43□□□□□ -1.86
HDAC6-228ENST00000486227 LCE3DQ9BYE3 92 aa3.43□□□□□ -1.86
HDAC6-228ENST00000486227 LCE3EQ5T5B0 92 aa3.41□□□□□ -1.86
HDAC6-228ENST00000486227 KRTAP6-3Q3LI67 103 aa3.38□□□□□ -1.87
HDAC6-228ENST00000486227 SYNE2Q8WXH0 6885 aaKnown RBP3.38□□□□□ -1.87
HDAC6-228ENST00000486227 MT3P25713 68 aa3.36□□□□□ -1.87
HDAC6-228ENST00000486227 KRTAP20-1Q3LI63 56 aa3.36□□□□□ -1.87
HDAC6-228ENST00000486227 KRTAP9-6A8MVA2 160 aa3.35□□□□□ -1.87
HDAC6-228ENST00000486227 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.34□□□□□ -1.87
HDAC6-228ENST00000486227 LCE1AQ5T7P2 110 aa3.32□□□□□ -1.88
HDAC6-228ENST00000486227 FCGBPQ9Y6R7 5405 aaPredicted RBP3.31□□□□□ -1.88
HDAC6-228ENST00000486227 KMT2DO14686 5537 aa3.31□□□□□ -1.88
HDAC6-228ENST00000486227 OBSCNQ5VST9 7968 aa3.28□□□□□ -1.88
HDAC6-228ENST00000486227 DSTQ03001 7570 aaKnown RBP3.27□□□□□ -1.89
HDAC6-228ENST00000486227 PRM1P04553 51 aa3.25□□□□□ -1.89
HDAC6-228ENST00000486227 MT1AP04731 61 aa3.23□□□□□ -1.89
HDAC6-228ENST00000486227 LCE5AQ5TCM9 118 aa3.22□□□□□ -1.89
HDAC6-228ENST00000486227 KRTAP4-9Q9BYQ8 210 aa3.18□□□□□ -1.9
HDAC6-228ENST00000486227 SSPOA2VEC9 5147 aa3.17□□□□□ -1.9
HDAC6-228ENST00000486227 LCE1DQ5T752 114 aa3.17□□□□□ -1.9
HDAC6-228ENST00000486227 KRTAP2-2Q9BYT5 123 aa3.17□□□□□ -1.9
HDAC6-228ENST00000486227 LCE1BQ5T7P3 118 aa3.15□□□□□ -1.9
HDAC6-228ENST00000486227 MUC12Q9UKN1 5478 aa3.14□□□□□ -1.91
HDAC6-228ENST00000486227 KRTAP6-1Q3LI64 71 aa3.12□□□□□ -1.91
HDAC6-228ENST00000486227 LCE4AQ5TA78 99 aa3.11□□□□□ -1.91
HDAC6-228ENST00000486227 MACF1Q9UPN3 7388 aaKnown RBP3.08□□□□□ -1.92
HDAC6-228ENST00000486227 KRTAP6-2Q3LI66 62 aa3□□□□□ -1.93
HDAC6-228ENST00000486227 KRTAP9-4Q9BYQ2 154 aa2.98□□□□□ -1.93
HDAC6-228ENST00000486227 KRTAP5-9P26371 169 aa2.92□□□□□ -1.94
HDAC6-228ENST00000486227 NEBP20929 6669 aa2.9□□□□□ -1.94
HDAC6-228ENST00000486227 MDN1Q9NU22 5596 aa2.85□□□□□ -1.95
HDAC6-228ENST00000486227 GPR98Q8WXG9 6306 aa2.75□□□□□ -1.97
HDAC6-228ENST00000486227 KRTAP4-6Q9BYQ5 205 aa2.69□□□□□ -1.98
HDAC6-228ENST00000486227 KRTAP9-9Q9BYP9 154 aa2.67□□□□□ -1.98
HDAC6-228ENST00000486227 LCE1CQ5T751 118 aa2.67□□□□□ -1.98
HDAC6-228ENST00000486227 LCE1EQ5T753 118 aa2.67□□□□□ -1.98
HDAC6-228ENST00000486227 LCE1FQ5T754 118 aa2.67□□□□□ -1.98
HDAC6-228ENST00000486227 KRTAP20-2Q3LI61 65 aa2.63□□□□□ -1.99
HDAC6-228ENST00000486227 KRTAP5-5Q701N2 237 aaPredicted RBP2.61□□□□□ -1.99
HDAC6-228ENST00000486227 MUC19Q7Z5P9 8384 aa2.54□□□□□ -2
HDAC6-228ENST00000486227 KRTAP5-4Q6L8H1 288 aa2.47□□□□□ -2.01
HDAC6-228ENST00000486227 KRTAP4-11Q9BYQ6 195 aa2.4□□□□□ -2.03
HDAC6-228ENST00000486227 MUC5ACP98088 5654 aa2.33□□□□□ -2.04
HDAC6-228ENST00000486227 KRTAP5-3Q6L8H2 238 aa2.27□□□□□ -2.05
HDAC6-228ENST00000486227 KRTAP4-12Q9BQ66 201 aa2.25□□□□□ -2.05
HDAC6-228ENST00000486227 KRTAP4-2Q9BYR5 136 aa2.25□□□□□ -2.05
HDAC6-228ENST00000486227 HMCN1Q96RW7 5635 aa2.23□□□□□ -2.05
HDAC6-228ENST00000486227 AHNAK2Q8IVF2 5795 aa2.23□□□□□ -2.05
HDAC6-228ENST00000486227 KRTAP4-4Q9BYR3 166 aa2.2□□□□□ -2.06
HDAC6-228ENST00000486227 KRTAP5-2Q701N4 177 aa2.1□□□□□ -2.07
HDAC6-228ENST00000486227 KRTAP5-8O75690 187 aa2.05□□□□□ -2.08
HDAC6-228ENST00000486227 KRTAP5-10Q6L8G5 202 aa1.98□□□□□ -2.09
HDAC6-228ENST00000486227 KRTAP5-7Q6L8G8 165 aa1.88□□□□□ -2.11
HDAC6-228ENST00000486227 AHNAKQ09666 5890 aaKnown RBP1.86□□□□□ -2.11
HDAC6-228ENST00000486227 KRTAP5-1Q6L8H4 278 aa1.85□□□□□ -2.11
HDAC6-228ENST00000486227 MUC5BQ9HC84 5762 aaPredicted RBP1.82□□□□□ -2.12
HDAC6-228ENST00000486227 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
HDAC6-228ENST00000486227 KRTAP5-11Q6L8G4 156 aa1.75□□□□□ -2.13
HDAC6-228ENST00000486227 KRTAP21-2Q3LI59 83 aa1.74□□□□□ -2.13
HDAC6-228ENST00000486227 KRTAP21-1Q3LI58 79 aa1.69□□□□□ -2.14
HDAC6-228ENST00000486227 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.64□□□□□ -2.15
HDAC6-228ENST00000486227 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 30.5 ms