RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TNXBP22105 4242 aa2.27□□□□□ -2.05
USP40-213ENST00000483216 INE1O15225 51 aa2.26□□□□□ -2.05
USP40-213ENST00000483216 KRTAP13-4Q3LI77 160 aa2.25□□□□□ -2.05
USP40-213ENST00000483216 ABCA13Q86UQ4 5058 aa2.24□□□□□ -2.05
USP40-213ENST00000483216 PRO2289Q9P1D8 64 aa2.24□□□□□ -2.05
USP40-213ENST00000483216 FLG2Q5D862 2391 aaPredicted RBP2.23□□□□□ -2.05
USP40-213ENST00000483216 LRP1Q07954 4544 aaKnown RBP2.21□□□□□ -2.06
USP40-213ENST00000483216 DMBT1Q9UGM3 2413 aaPredicted RBP2.21□□□□□ -2.06
USP40-213ENST00000483216 TNP1P09430 55 aa2.2□□□□□ -2.06
USP40-213ENST00000483216 MYCBP2O75592 4640 aa2.19□□□□□ -2.06
USP40-213ENST00000483216 HERC1Q15751 4861 aa2.18□□□□□ -2.06
USP40-213ENST00000483216 MT1HL1P0DM35 61 aa2.18□□□□□ -2.06
USP40-213ENST00000483216 CRCT1Q9UGL9 99 aa2.14□□□□□ -2.07
USP40-213ENST00000483216 HMCN2Q8NDA2 5059 aa2.08□□□□□ -2.08
USP40-213ENST00000483216 LRP2P98164 4655 aa2.08□□□□□ -2.08
USP40-213ENST00000483216 UBR4Q5T4S7 5183 aa2.05□□□□□ -2.08
USP40-213ENST00000483216 MUC17Q685J3 4493 aa2.05□□□□□ -2.08
USP40-213ENST00000483216 LPAP08519 4548 aa2.03□□□□□ -2.08
USP40-213ENST00000483216 RNF213Q63HN8 5207 aa2.02□□□□□ -2.09
USP40-213ENST00000483216 KRTAP4-1Q9BYQ7 146 aa1.97□□□□□ -2.09
USP40-213ENST00000483216 FLGP20930 4061 aaPredicted RBP1.96□□□□□ -2.1
USP40-213ENST00000483216 MUC2Q02817 5179 aa1.96□□□□□ -2.1
USP40-213ENST00000483216 KRTAP19-2Q3LHN2 52 aa1.93□□□□□ -2.1
USP40-213ENST00000483216 KRTAP8-1Q8IUC2 63 aa1.9□□□□□ -2.11
USP40-213ENST00000483216 FAT4Q6V0I7 4981 aa1.88□□□□□ -2.11
USP40-213ENST00000483216 SPRR2GQ9BYE4 73 aa1.87□□□□□ -2.11
USP40-213ENST00000483216 M0R2T5 61 aa1.85□□□□□ -2.11
USP40-213ENST00000483216 FCGBPQ9Y6R7 5405 aaPredicted RBP1.85□□□□□ -2.11
USP40-213ENST00000483216 MT1HP80294 61 aa1.84□□□□□ -2.11
USP40-213ENST00000483216 HMCN1Q96RW7 5635 aa1.76□□□□□ -2.13
USP40-213ENST00000483216 MT2AP02795 61 aa1.75□□□□□ -2.13
USP40-213ENST00000483216 MT1FP04733 61 aa1.75□□□□□ -2.13
USP40-213ENST00000483216 KRTAP19-8Q3LI54 63 aa1.74□□□□□ -2.13
USP40-213ENST00000483216 FSIP2Q5CZC0 6907 aa1.72□□□□□ -2.13
USP40-213ENST00000483216 MT1BP07438 61 aa1.68□□□□□ -2.14
USP40-213ENST00000483216 KRTAP2-3P0C7H8 128 aa1.67□□□□□ -2.14
USP40-213ENST00000483216 KRTAP2-4Q9BYR9 128 aa1.67□□□□□ -2.14
USP40-213ENST00000483216 KRTAP2-1Q9BYU5 128 aa1.67□□□□□ -2.14
USP40-213ENST00000483216 MT1XP80297 61 aa1.66□□□□□ -2.14
USP40-213ENST00000483216 USH2AO75445 5202 aa1.65□□□□□ -2.15
USP40-213ENST00000483216 KRTAP19-6Q3LI70 58 aa1.64□□□□□ -2.15
USP40-213ENST00000483216 SSPOA2VEC9 5147 aa1.62□□□□□ -2.15
USP40-213ENST00000483216 KRTAP19-5Q3LI72 72 aa1.57□□□□□ -2.16
USP40-213ENST00000483216 MT1EP04732 61 aa1.55□□□□□ -2.16
USP40-213ENST00000483216 MT1LQ93083 61 aa1.53□□□□□ -2.16
USP40-213ENST00000483216 MACF1Q9UPN3 7388 aaKnown RBP1.52□□□□□ -2.17
USP40-213ENST00000483216 MT1AP04731 61 aa1.49□□□□□ -2.17
USP40-213ENST00000483216 KMT2DO14686 5537 aa1.48□□□□□ -2.17
USP40-213ENST00000483216 KRTAP19-7Q3SYF9 63 aa1.47□□□□□ -2.17
USP40-213ENST00000483216 SYNE2Q8WXH0 6885 aaKnown RBP1.46□□□□□ -2.18
USP40-213ENST00000483216 MT1GP13640 62 aa1.43□□□□□ -2.18
USP40-213ENST00000483216 KRTAP20-1Q3LI63 56 aa1.43□□□□□ -2.18
USP40-213ENST00000483216 SPRR2FQ96RM1 72 aa1.43□□□□□ -2.18
USP40-213ENST00000483216 MUC12Q9UKN1 5478 aa1.42□□□□□ -2.18
USP40-213ENST00000483216 MDN1Q9NU22 5596 aa1.42□□□□□ -2.18
USP40-213ENST00000483216 SPRR2EP22531 72 aa1.41□□□□□ -2.18
USP40-213ENST00000483216 SPRR2BP35325 72 aa1.41□□□□□ -2.18
USP40-213ENST00000483216 SPRR2AP35326 72 aa1.41□□□□□ -2.18
USP40-213ENST00000483216 KRTAP19-3Q7Z4W3 81 aa1.37□□□□□ -2.19
USP40-213ENST00000483216 NEBP20929 6669 aa1.37□□□□□ -2.19
USP40-213ENST00000483216 SPRR2DP22532 72 aa1.36□□□□□ -2.19
USP40-213ENST00000483216 MT1MQ8N339 61 aa1.36□□□□□ -2.19
USP40-213ENST00000483216 PRM1P04553 51 aa1.32□□□□□ -2.2
USP40-213ENST00000483216 KRTAP5-10Q6L8G5 202 aa1.29□□□□□ -2.2
USP40-213ENST00000483216 DSTQ03001 7570 aaKnown RBP1.26□□□□□ -2.21
USP40-213ENST00000483216 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
USP40-213ENST00000483216 KRTAP6-1Q3LI64 71 aa1.21□□□□□ -2.22
USP40-213ENST00000483216 KRTAP6-2Q3LI66 62 aa1.2□□□□□ -2.22
USP40-213ENST00000483216 MT4P47944 62 aa1.18□□□□□ -2.22
USP40-213ENST00000483216 SYNE1Q8NF91 8797 aaKnown RBP1.14□□□□□ -2.23
USP40-213ENST00000483216 GPR98Q8WXG9 6306 aa1.13□□□□□ -2.23
USP40-213ENST00000483216 KRTAP20-2Q3LI61 65 aa1.11□□□□□ -2.23
USP40-213ENST00000483216 AHNAK2Q8IVF2 5795 aa1.09□□□□□ -2.23
USP40-213ENST00000483216 MUC5ACP98088 5654 aa0.94□□□□□ -2.26
USP40-213ENST00000483216 MUC5BQ9HC84 5762 aaPredicted RBP0.91□□□□□ -2.26
USP40-213ENST00000483216 AHNAKQ09666 5890 aaKnown RBP0.9□□□□□ -2.27
USP40-213ENST00000483216 KRTAP21-1Q3LI58 79 aa0.9□□□□□ -2.27
USP40-213ENST00000483216 PHGR1C9JFL3 82 aa0.66□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 108.9 ms