RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 KRTAP9-3Q9BYQ3 159 aa1.45□□□□□ -2.18
USF3-202ENST00000478658 TNXBP22105 4242 aa1.45□□□□□ -2.18
USF3-202ENST00000478658 SSPOA2VEC9 5147 aa1.45□□□□□ -2.18
USF3-202ENST00000478658 KRTAP2-2Q9BYT5 123 aa1.45□□□□□ -2.18
USF3-202ENST00000478658 KRTAP9-6A0A140TA67 174 aa1.44□□□□□ -2.18
USF3-202ENST00000478658 KRTAP6-3Q3LI67 103 aa1.44□□□□□ -2.18
USF3-202ENST00000478658 DYNC2H1Q8NCM8 4307 aaKnown RBP1.43□□□□□ -2.18
USF3-202ENST00000478658 VPS13DQ5THJ4 4388 aa1.43□□□□□ -2.18
USF3-202ENST00000478658 KRTAP9-8Q9BYQ0 159 aa1.43□□□□□ -2.18
USF3-202ENST00000478658 SMG1Q96Q15 3661 aaKnown RBP1.43□□□□□ -2.18
USF3-202ENST00000478658 SYNE2Q8WXH0 6885 aaKnown RBP1.43□□□□□ -2.18
USF3-202ENST00000478658 LPAP08519 4548 aa1.42□□□□□ -2.18
USF3-202ENST00000478658 KRTAP9-2Q9BYQ4 174 aa1.41□□□□□ -2.18
USF3-202ENST00000478658 DNAH17Q9UFH2 4485 aa1.4□□□□□ -2.18
USF3-202ENST00000478658 KRTAP9-4Q9BYQ2 154 aa1.4□□□□□ -2.18
USF3-202ENST00000478658 APOBP04114 4563 aaKnown RBP1.4□□□□□ -2.19
USF3-202ENST00000478658 KRTAP9-7A8MTY7 169 aa1.4□□□□□ -2.19
USF3-202ENST00000478658 KRTAP19-7Q3SYF9 63 aa1.39□□□□□ -2.19
USF3-202ENST00000478658 LCE2AQ5TA79 106 aaPredicted RBP1.38□□□□□ -2.19
USF3-202ENST00000478658 MUC2Q02817 5179 aa1.38□□□□□ -2.19
USF3-202ENST00000478658 DNAH11Q96DT5 4516 aa1.38□□□□□ -2.19
USF3-202ENST00000478658 KRTAP6-2Q3LI66 62 aa1.38□□□□□ -2.19
USF3-202ENST00000478658 DNAH9Q9NYC9 4486 aa1.37□□□□□ -2.19
USF3-202ENST00000478658 DNAH8Q96JB1 4490 aa1.35□□□□□ -2.19
USF3-202ENST00000478658 KRTAP4-8A0A0G2JLE6 195 aa1.34□□□□□ -2.19
USF3-202ENST00000478658 KRTAP4-8Q9BYQ9 185 aa1.34□□□□□ -2.19
USF3-202ENST00000478658 CUBNO60494 3623 aa1.33□□□□□ -2.2
USF3-202ENST00000478658 KMT2DO14686 5537 aa1.33□□□□□ -2.2
USF3-202ENST00000478658 LAMA5O15230 3695 aa1.32□□□□□ -2.2
USF3-202ENST00000478658 FAT3Q8TDW7 4589 aa1.3□□□□□ -2.2
USF3-202ENST00000478658 OBSCNQ5VST9 7968 aa1.29□□□□□ -2.2
USF3-202ENST00000478658 KRTAP9-6A8MVA2 160 aa1.27□□□□□ -2.21
USF3-202ENST00000478658 KRTAP4-9Q9BYQ8 210 aa1.25□□□□□ -2.21
USF3-202ENST00000478658 LRP2P98164 4655 aa1.24□□□□□ -2.21
USF3-202ENST00000478658 SVEP1Q4LDE5 3571 aa1.23□□□□□ -2.21
USF3-202ENST00000478658 MACF1Q9UPN3 7388 aaKnown RBP1.21□□□□□ -2.22
USF3-202ENST00000478658 LOC100996750A0A140TA64 210 aa1.21□□□□□ -2.22
USF3-202ENST00000478658 KRTAP20-2Q3LI61 65 aa1.2□□□□□ -2.22
USF3-202ENST00000478658 KRTAP6-1Q3LI64 71 aa1.19□□□□□ -2.22
USF3-202ENST00000478658 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.19□□□□□ -2.22
USF3-202ENST00000478658 KRTAP4-7Q9BYR0 210 aa1.19□□□□□ -2.22
USF3-202ENST00000478658 FCGBPQ9Y6R7 5405 aaPredicted RBP1.19□□□□□ -2.22
USF3-202ENST00000478658 MUC12Q9UKN1 5478 aa1.17□□□□□ -2.22
USF3-202ENST00000478658 DSTQ03001 7570 aaKnown RBP1.11□□□□□ -2.23
USF3-202ENST00000478658 KRTAP4-3Q9BYR4 195 aa1.11□□□□□ -2.23
USF3-202ENST00000478658 NEBP20929 6669 aa1.1□□□□□ -2.23
USF3-202ENST00000478658 GPR98Q8WXG9 6306 aa1.09□□□□□ -2.24
USF3-202ENST00000478658 KRTAP5-4Q6L8H1 288 aa1.09□□□□□ -2.24
USF3-202ENST00000478658 KRTAP4-11Q9BYQ6 195 aa1.08□□□□□ -2.24
USF3-202ENST00000478658 MDN1Q9NU22 5596 aa1.07□□□□□ -2.24
USF3-202ENST00000478658 MUC17Q685J3 4493 aa1.06□□□□□ -2.24
USF3-202ENST00000478658 HMCN1Q96RW7 5635 aa1.03□□□□□ -2.24
USF3-202ENST00000478658 KRTAP19-2Q3LHN2 52 aa1□□□□□ -2.25
USF3-202ENST00000478658 KRTAP5-9P26371 169 aa0.99□□□□□ -2.25
USF3-202ENST00000478658 KRTAP4-6Q9BYQ5 205 aa0.98□□□□□ -2.25
USF3-202ENST00000478658 KRTAP5-5Q701N2 237 aaPredicted RBP0.98□□□□□ -2.25
USF3-202ENST00000478658 AHNAK2Q8IVF2 5795 aa0.97□□□□□ -2.25
USF3-202ENST00000478658 MUC5BQ9HC84 5762 aaPredicted RBP0.97□□□□□ -2.25
USF3-202ENST00000478658 MUC5ACP98088 5654 aa0.95□□□□□ -2.26
USF3-202ENST00000478658 KRTAP5-2Q701N4 177 aa0.95□□□□□ -2.26
USF3-202ENST00000478658 KRTAP4-12Q9BQ66 201 aa0.94□□□□□ -2.26
USF3-202ENST00000478658 KRTAP4-2Q9BYR5 136 aa0.94□□□□□ -2.26
USF3-202ENST00000478658 KRTAP5-3Q6L8H2 238 aa0.92□□□□□ -2.26
USF3-202ENST00000478658 PHGR1C9JFL3 82 aa0.92□□□□□ -2.26
USF3-202ENST00000478658 KRTAP4-4Q9BYR3 166 aa0.88□□□□□ -2.27
USF3-202ENST00000478658 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.85□□□□□ -2.27
USF3-202ENST00000478658 KRTAP21-1Q3LI58 79 aa0.8□□□□□ -2.28
USF3-202ENST00000478658 SYNE1Q8NF91 8797 aaKnown RBP0.79□□□□□ -2.28
USF3-202ENST00000478658 MUC19Q7Z5P9 8384 aa0.77□□□□□ -2.29
USF3-202ENST00000478658 KRTAP21-2Q3LI59 83 aa0.77□□□□□ -2.29
USF3-202ENST00000478658 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
USF3-202ENST00000478658 KRTAP5-11Q6L8G4 156 aa0.73□□□□□ -2.29
USF3-202ENST00000478658 AHNAKQ09666 5890 aaKnown RBP0.71□□□□□ -2.3
USF3-202ENST00000478658 KRTAP5-8O75690 187 aa0.69□□□□□ -2.3
USF3-202ENST00000478658 KRTAP5-10Q6L8G5 202 aa0.67□□□□□ -2.3
USF3-202ENST00000478658 KRTAP5-1Q6L8H4 278 aa0.57□□□□□ -2.32
USF3-202ENST00000478658 KRTAP5-7Q6L8G8 165 aa0.52□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 12.9 ms