RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 SPRR2DP22532 72 aa3.86□□□□□ -1.79
U2AF1-209ENST00000475639 KRTAP4-7Q9BYR0 210 aa3.86□□□□□ -1.79
U2AF1-209ENST00000475639 OBSCNQ5VST9 7968 aa3.82□□□□□ -1.8
U2AF1-209ENST00000475639 KRTAP9-3Q9BYQ3 159 aa3.79□□□□□ -1.8
U2AF1-209ENST00000475639 KRTAP4-8A0A0G2JLE6 195 aa3.78□□□□□ -1.8
U2AF1-209ENST00000475639 KRTAP4-8Q9BYQ9 185 aa3.78□□□□□ -1.8
U2AF1-209ENST00000475639 USH2AO75445 5202 aa3.74□□□□□ -1.81
U2AF1-209ENST00000475639 KRTAP19-7Q3SYF9 63 aa3.72□□□□□ -1.81
U2AF1-209ENST00000475639 MT3P25713 68 aa3.64□□□□□ -1.83
U2AF1-209ENST00000475639 LCE2DQ5TA82 110 aaPredicted RBP3.64□□□□□ -1.83
U2AF1-209ENST00000475639 MT1LQ93083 61 aa3.64□□□□□ -1.83
U2AF1-209ENST00000475639 KRTAP19-3Q7Z4W3 81 aa3.62□□□□□ -1.83
U2AF1-209ENST00000475639 PRM1P04553 51 aa3.58□□□□□ -1.84
U2AF1-209ENST00000475639 LOC100996750A0A140TA64 210 aa3.57□□□□□ -1.84
U2AF1-209ENST00000475639 MT1EP04732 61 aa3.55□□□□□ -1.84
U2AF1-209ENST00000475639 LCE1BQ5T7P3 118 aa3.55□□□□□ -1.84
U2AF1-209ENST00000475639 LCE1DQ5T752 114 aa3.49□□□□□ -1.85
U2AF1-209ENST00000475639 KRTAP4-3Q9BYR4 195 aa3.48□□□□□ -1.85
U2AF1-209ENST00000475639 MT4P47944 62 aa3.42□□□□□ -1.86
U2AF1-209ENST00000475639 MUC19Q7Z5P9 8384 aa3.42□□□□□ -1.86
U2AF1-209ENST00000475639 KRTAP9-2Q9BYQ4 174 aa3.4□□□□□ -1.87
U2AF1-209ENST00000475639 MT1MQ8N339 61 aa3.39□□□□□ -1.87
U2AF1-209ENST00000475639 KRTAP4-9Q9BYQ8 210 aa3.39□□□□□ -1.87
U2AF1-209ENST00000475639 KRTAP9-7A8MTY7 169 aa3.36□□□□□ -1.87
U2AF1-209ENST00000475639 FCGBPQ9Y6R7 5405 aaPredicted RBP3.32□□□□□ -1.88
U2AF1-209ENST00000475639 KRTAP5-5Q701N2 237 aaPredicted RBP3.31□□□□□ -1.88
U2AF1-209ENST00000475639 LCE5AQ5TCM9 118 aa3.31□□□□□ -1.88
U2AF1-209ENST00000475639 KRTAP6-3Q3LI67 103 aa3.31□□□□□ -1.88
U2AF1-209ENST00000475639 DSTQ03001 7570 aaKnown RBP3.29□□□□□ -1.88
U2AF1-209ENST00000475639 SSPOA2VEC9 5147 aa3.29□□□□□ -1.88
U2AF1-209ENST00000475639 MUC12Q9UKN1 5478 aa3.28□□□□□ -1.88
U2AF1-209ENST00000475639 KRTAP9-6A0A140TA67 174 aa3.28□□□□□ -1.88
U2AF1-209ENST00000475639 MACF1Q9UPN3 7388 aaKnown RBP3.27□□□□□ -1.89
U2AF1-209ENST00000475639 MT1AP04731 61 aa3.26□□□□□ -1.89
U2AF1-209ENST00000475639 KRTAP2-2Q9BYT5 123 aa3.22□□□□□ -1.89
U2AF1-209ENST00000475639 LCE1AQ5T7P2 110 aa3.21□□□□□ -1.9
U2AF1-209ENST00000475639 LCE2AQ5TA79 106 aaPredicted RBP3.17□□□□□ -1.9
U2AF1-209ENST00000475639 KRTAP19-6Q3LI70 58 aa3.16□□□□□ -1.9
U2AF1-209ENST00000475639 GPR98Q8WXG9 6306 aa3.12□□□□□ -1.91
U2AF1-209ENST00000475639 KRTAP6-1Q3LI64 71 aa3.12□□□□□ -1.91
U2AF1-209ENST00000475639 LCE1CQ5T751 118 aa3.1□□□□□ -1.91
U2AF1-209ENST00000475639 LCE1EQ5T753 118 aa3.1□□□□□ -1.91
U2AF1-209ENST00000475639 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
U2AF1-209ENST00000475639 FSIP2Q5CZC0 6907 aa3.09□□□□□ -1.91
U2AF1-209ENST00000475639 KRTAP6-2Q3LI66 62 aa3.09□□□□□ -1.91
U2AF1-209ENST00000475639 SYNE2Q8WXH0 6885 aaKnown RBP3.04□□□□□ -1.92
U2AF1-209ENST00000475639 KRTAP20-1Q3LI63 56 aa2.96□□□□□ -1.94
U2AF1-209ENST00000475639 KRTAP9-4Q9BYQ2 154 aa2.9□□□□□ -1.95
U2AF1-209ENST00000475639 LCE4AQ5TA78 99 aa2.89□□□□□ -1.95
U2AF1-209ENST00000475639 MDN1Q9NU22 5596 aa2.75□□□□□ -1.97
U2AF1-209ENST00000475639 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.71□□□□□ -1.98
U2AF1-209ENST00000475639 KRTAP9-9Q9BYP9 154 aa2.68□□□□□ -1.98
U2AF1-209ENST00000475639 KRTAP4-11Q9BYQ6 195 aa2.6□□□□□ -1.99
U2AF1-209ENST00000475639 KRTAP4-6Q9BYQ5 205 aa2.47□□□□□ -2.01
U2AF1-209ENST00000475639 KRTAP5-9P26371 169 aa2.45□□□□□ -2.02
U2AF1-209ENST00000475639 NEBP20929 6669 aa2.44□□□□□ -2.02
U2AF1-209ENST00000475639 KRTAP20-2Q3LI61 65 aa2.44□□□□□ -2.02
U2AF1-209ENST00000475639 MUC5ACP98088 5654 aa2.41□□□□□ -2.02
U2AF1-209ENST00000475639 KRTAP5-10Q6L8G5 202 aa2.33□□□□□ -2.04
U2AF1-209ENST00000475639 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
U2AF1-209ENST00000475639 KRTAP5-4Q6L8H1 288 aa2.28□□□□□ -2.04
U2AF1-209ENST00000475639 KRTAP4-12Q9BQ66 201 aa2.26□□□□□ -2.05
U2AF1-209ENST00000475639 KRTAP4-2Q9BYR5 136 aa2.26□□□□□ -2.05
U2AF1-209ENST00000475639 HMCN1Q96RW7 5635 aa2.22□□□□□ -2.05
U2AF1-209ENST00000475639 KRTAP5-1Q6L8H4 278 aa2.21□□□□□ -2.06
U2AF1-209ENST00000475639 KRTAP5-2Q701N4 177 aa2.18□□□□□ -2.06
U2AF1-209ENST00000475639 KRTAP21-1Q3LI58 79 aa2.14□□□□□ -2.07
U2AF1-209ENST00000475639 AHNAK2Q8IVF2 5795 aa2.14□□□□□ -2.07
U2AF1-209ENST00000475639 KRTAP5-3Q6L8H2 238 aa2□□□□□ -2.09
U2AF1-209ENST00000475639 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
U2AF1-209ENST00000475639 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.86□□□□□ -2.11
U2AF1-209ENST00000475639 AHNAKQ09666 5890 aaKnown RBP1.74□□□□□ -2.13
U2AF1-209ENST00000475639 MUC5BQ9HC84 5762 aaPredicted RBP1.73□□□□□ -2.13
U2AF1-209ENST00000475639 PHGR1C9JFL3 82 aa1.72□□□□□ -2.13
U2AF1-209ENST00000475639 KRTAP5-8O75690 187 aa1.64□□□□□ -2.15
U2AF1-209ENST00000475639 KRTAP5-11Q6L8G4 156 aa1.61□□□□□ -2.15
U2AF1-209ENST00000475639 KRTAP5-7Q6L8G8 165 aa1.58□□□□□ -2.16
U2AF1-209ENST00000475639 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 62.1 ms