RNA–Protein interactions for RNA: ENST00000475319.1

ECHDC1-215, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 1,543 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-215ENST00000475319 PKHD1L1Q86WI1 4243 aa2.61□□□□□ -1.99
ECHDC1-215ENST00000475319 FAT3Q8TDW7 4589 aa2.6□□□□□ -1.99
ECHDC1-215ENST00000475319 HMCN1Q96RW7 5635 aa2.58□□□□□ -2
ECHDC1-215ENST00000475319 RNF213Q63HN8 5207 aa2.58□□□□□ -2
ECHDC1-215ENST00000475319 LRP1Q07954 4544 aaKnown RBP2.57□□□□□ -2
ECHDC1-215ENST00000475319 C9orf92A6NGG3 77 aa2.54□□□□□ -2
ECHDC1-215ENST00000475319 TNP1P09430 55 aa2.54□□□□□ -2
ECHDC1-215ENST00000475319 TNXBP22105 4242 aa2.54□□□□□ -2
ECHDC1-215ENST00000475319 LRP2P98164 4655 aa2.51□□□□□ -2.01
ECHDC1-215ENST00000475319 KRTAP10-10P60014 251 aa2.47□□□□□ -2.01
ECHDC1-215ENST00000475319 FAT4Q6V0I7 4981 aa2.39□□□□□ -2.03
ECHDC1-215ENST00000475319 LPAP08519 4548 aa2.39□□□□□ -2.03
ECHDC1-215ENST00000475319 M0R2T5 61 aa2.36□□□□□ -2.03
ECHDC1-215ENST00000475319 MUC17Q685J3 4493 aa2.34□□□□□ -2.03
ECHDC1-215ENST00000475319 LCE3DQ9BYE3 92 aa2.34□□□□□ -2.03
ECHDC1-215ENST00000475319 CRCT1Q9UGL9 99 aa2.34□□□□□ -2.03
ECHDC1-215ENST00000475319 MUC2Q02817 5179 aa2.34□□□□□ -2.04
ECHDC1-215ENST00000475319 FSIP2Q5CZC0 6907 aa2.28□□□□□ -2.04
ECHDC1-215ENST00000475319 MT1HP80294 61 aa2.25□□□□□ -2.05
ECHDC1-215ENST00000475319 KRTAP8-1Q8IUC2 63 aa2.25□□□□□ -2.05
ECHDC1-215ENST00000475319 KRTAP4-1Q9BYQ7 146 aa2.24□□□□□ -2.05
ECHDC1-215ENST00000475319 MUC19Q7Z5P9 8384 aa2.21□□□□□ -2.06
ECHDC1-215ENST00000475319 KRTAP2-3P0C7H8 128 aa2.17□□□□□ -2.06
ECHDC1-215ENST00000475319 KRTAP19-2Q3LHN2 52 aa2.17□□□□□ -2.06
ECHDC1-215ENST00000475319 KRTAP2-4Q9BYR9 128 aa2.17□□□□□ -2.06
ECHDC1-215ENST00000475319 KRTAP2-1Q9BYU5 128 aa2.17□□□□□ -2.06
ECHDC1-215ENST00000475319 FLGP20930 4061 aaPredicted RBP2.15□□□□□ -2.07
ECHDC1-215ENST00000475319 KRTAP12-3P60328 96 aa2.12□□□□□ -2.07
ECHDC1-215ENST00000475319 KRTAP6-3Q3LI67 103 aa2.12□□□□□ -2.07
ECHDC1-215ENST00000475319 USH2AO75445 5202 aa2.08□□□□□ -2.08
ECHDC1-215ENST00000475319 MT2AP02795 61 aa2.07□□□□□ -2.08
ECHDC1-215ENST00000475319 KRTAP12-4P60329 112 aa2.07□□□□□ -2.08
ECHDC1-215ENST00000475319 MACF1Q9UPN3 7388 aaKnown RBP2.06□□□□□ -2.08
ECHDC1-215ENST00000475319 SYNE2Q8WXH0 6885 aaKnown RBP2.06□□□□□ -2.08
ECHDC1-215ENST00000475319 SSPOA2VEC9 5147 aa2.06□□□□□ -2.08
ECHDC1-215ENST00000475319 FCGBPQ9Y6R7 5405 aaPredicted RBP2.06□□□□□ -2.08
ECHDC1-215ENST00000475319 KRTAP5-7Q6L8G8 165 aa2.05□□□□□ -2.08
ECHDC1-215ENST00000475319 MT1FP04733 61 aa2.03□□□□□ -2.08
ECHDC1-215ENST00000475319 GPR98Q8WXG9 6306 aa2.02□□□□□ -2.09
ECHDC1-215ENST00000475319 KRTAP19-6Q3LI70 58 aa2.02□□□□□ -2.09
ECHDC1-215ENST00000475319 NEBP20929 6669 aa2□□□□□ -2.09
ECHDC1-215ENST00000475319 SPRR2GQ9BYE4 73 aa1.96□□□□□ -2.09
ECHDC1-215ENST00000475319 KRTAP20-1Q3LI63 56 aa1.94□□□□□ -2.1
ECHDC1-215ENST00000475319 KRTAP21-2Q3LI59 83 aa1.91□□□□□ -2.1
ECHDC1-215ENST00000475319 KRTAP19-5Q3LI72 72 aa1.91□□□□□ -2.1
ECHDC1-215ENST00000475319 KRTAP19-8Q3LI54 63 aa1.86□□□□□ -2.11
ECHDC1-215ENST00000475319 MUC12Q9UKN1 5478 aa1.85□□□□□ -2.11
ECHDC1-215ENST00000475319 MUC5BQ9HC84 5762 aaPredicted RBP1.84□□□□□ -2.11
ECHDC1-215ENST00000475319 MT1BP07438 61 aa1.83□□□□□ -2.12
ECHDC1-215ENST00000475319 PRM1P04553 51 aa1.82□□□□□ -2.12
ECHDC1-215ENST00000475319 SPRR2EP22531 72 aa1.82□□□□□ -2.12
ECHDC1-215ENST00000475319 SPRR2BP35325 72 aa1.82□□□□□ -2.12
ECHDC1-215ENST00000475319 SPRR2AP35326 72 aa1.82□□□□□ -2.12
ECHDC1-215ENST00000475319 MDN1Q9NU22 5596 aa1.82□□□□□ -2.12
ECHDC1-215ENST00000475319 SPRR2FQ96RM1 72 aa1.81□□□□□ -2.12
ECHDC1-215ENST00000475319 KMT2DO14686 5537 aa1.79□□□□□ -2.12
ECHDC1-215ENST00000475319 MT1XP80297 61 aa1.78□□□□□ -2.12
ECHDC1-215ENST00000475319 SPRR2DP22532 72 aa1.77□□□□□ -2.13
ECHDC1-215ENST00000475319 MT1AP04731 61 aa1.74□□□□□ -2.13
ECHDC1-215ENST00000475319 MT1EP04732 61 aa1.69□□□□□ -2.14
ECHDC1-215ENST00000475319 MT1LQ93083 61 aa1.66□□□□□ -2.14
ECHDC1-215ENST00000475319 DSTQ03001 7570 aaKnown RBP1.62□□□□□ -2.15
ECHDC1-215ENST00000475319 AHNAK2Q8IVF2 5795 aa1.61□□□□□ -2.15
ECHDC1-215ENST00000475319 SYNE1Q8NF91 8797 aaKnown RBP1.6□□□□□ -2.15
ECHDC1-215ENST00000475319 KRTAP6-2Q3LI66 62 aa1.59□□□□□ -2.16
ECHDC1-215ENST00000475319 KRTAP19-7Q3SYF9 63 aa1.57□□□□□ -2.16
ECHDC1-215ENST00000475319 KRTAP19-3Q7Z4W3 81 aa1.57□□□□□ -2.16
ECHDC1-215ENST00000475319 MT1GP13640 62 aa1.56□□□□□ -2.16
ECHDC1-215ENST00000475319 MT4P47944 62 aa1.53□□□□□ -2.16
ECHDC1-215ENST00000475319 AHNAKQ09666 5890 aaKnown RBP1.52□□□□□ -2.17
ECHDC1-215ENST00000475319 MT1MQ8N339 61 aa1.47□□□□□ -2.17
ECHDC1-215ENST00000475319 KRTAP5-10Q6L8G5 202 aa1.45□□□□□ -2.18
ECHDC1-215ENST00000475319 KRTAP20-2Q3LI61 65 aa1.38□□□□□ -2.19
ECHDC1-215ENST00000475319 KRTAP6-1Q3LI64 71 aa1.31□□□□□ -2.2
ECHDC1-215ENST00000475319 MUC5ACP98088 5654 aa1.28□□□□□ -2.2
ECHDC1-215ENST00000475319 KRTAP21-1Q3LI58 79 aa1.27□□□□□ -2.21
ECHDC1-215ENST00000475319 PHGR1C9JFL3 82 aa0.9□□□□□ -2.26
ECHDC1-215ENST00000475319 MUC16Q8WXI7 14507 aa0.78□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 5.8 ms