RNA–Protein interactions for RNA: ENST00000471181.6

BRCA1-210, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-210ENST00000471181 KRTAP4-7Q9BYR0 210 aa2.18□□□□□ -2.06
BRCA1-210ENST00000471181 MT3P25713 68 aa2.17□□□□□ -2.06
BRCA1-210ENST00000471181 KRTAP19-3Q7Z4W3 81 aa2.16□□□□□ -2.06
BRCA1-210ENST00000471181 LCE5AQ5TCM9 118 aa2.15□□□□□ -2.06
BRCA1-210ENST00000471181 MT1BP07438 61 aa2.14□□□□□ -2.07
BRCA1-210ENST00000471181 KRTAP9-8Q9BYQ0 159 aa2.12□□□□□ -2.07
BRCA1-210ENST00000471181 SSPOA2VEC9 5147 aa2.11□□□□□ -2.07
BRCA1-210ENST00000471181 LOC100996750A0A140TA64 210 aa2.1□□□□□ -2.07
BRCA1-210ENST00000471181 MT1LQ93083 61 aa2.09□□□□□ -2.07
BRCA1-210ENST00000471181 USH2AO75445 5202 aa2.08□□□□□ -2.08
BRCA1-210ENST00000471181 KRTAP9-2Q9BYQ4 174 aa2.07□□□□□ -2.08
BRCA1-210ENST00000471181 LCE1CQ5T751 118 aa2.06□□□□□ -2.08
BRCA1-210ENST00000471181 LCE1EQ5T753 118 aa2.06□□□□□ -2.08
BRCA1-210ENST00000471181 LCE1FQ5T754 118 aa2.06□□□□□ -2.08
BRCA1-210ENST00000471181 LCE1AQ5T7P2 110 aa2.06□□□□□ -2.08
BRCA1-210ENST00000471181 MT1EP04732 61 aa2.05□□□□□ -2.08
BRCA1-210ENST00000471181 KRTAP9-3Q9BYQ3 159 aa2.04□□□□□ -2.08
BRCA1-210ENST00000471181 KRTAP9-6A0A140TA67 174 aa2.04□□□□□ -2.08
BRCA1-210ENST00000471181 MT1MQ8N339 61 aa2.03□□□□□ -2.08
BRCA1-210ENST00000471181 KRTAP4-3Q9BYR4 195 aa2.02□□□□□ -2.09
BRCA1-210ENST00000471181 KRTAP4-9Q9BYQ8 210 aa2□□□□□ -2.09
BRCA1-210ENST00000471181 SYNE1Q8NF91 8797 aaKnown RBP1.99□□□□□ -2.09
BRCA1-210ENST00000471181 LCE4AQ5TA78 99 aa1.96□□□□□ -2.09
BRCA1-210ENST00000471181 KRTAP19-6Q3LI70 58 aa1.96□□□□□ -2.1
BRCA1-210ENST00000471181 KRTAP20-1Q3LI63 56 aa1.94□□□□□ -2.1
BRCA1-210ENST00000471181 KRTAP9-7A8MTY7 169 aa1.91□□□□□ -2.1
BRCA1-210ENST00000471181 MT1AP04731 61 aa1.91□□□□□ -2.1
BRCA1-210ENST00000471181 KRTAP6-2Q3LI66 62 aa1.91□□□□□ -2.1
BRCA1-210ENST00000471181 KRTAP2-3P0C7H8 128 aa1.89□□□□□ -2.11
BRCA1-210ENST00000471181 KRTAP2-4Q9BYR9 128 aa1.89□□□□□ -2.11
BRCA1-210ENST00000471181 KRTAP2-1Q9BYU5 128 aa1.89□□□□□ -2.11
BRCA1-210ENST00000471181 FSIP2Q5CZC0 6907 aa1.88□□□□□ -2.11
BRCA1-210ENST00000471181 KRTAP4-6Q9BYQ5 205 aa1.87□□□□□ -2.11
BRCA1-210ENST00000471181 FCGBPQ9Y6R7 5405 aaPredicted RBP1.83□□□□□ -2.12
BRCA1-210ENST00000471181 SYNE2Q8WXH0 6885 aaKnown RBP1.83□□□□□ -2.12
BRCA1-210ENST00000471181 KRTAP6-3Q3LI67 103 aa1.82□□□□□ -2.12
BRCA1-210ENST00000471181 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.78□□□□□ -2.12
BRCA1-210ENST00000471181 KRTAP6-1Q3LI64 71 aa1.78□□□□□ -2.12
BRCA1-210ENST00000471181 KRTAP9-4Q9BYQ2 154 aa1.78□□□□□ -2.12
BRCA1-210ENST00000471181 OBSCNQ5VST9 7968 aa1.78□□□□□ -2.12
BRCA1-210ENST00000471181 KRTAP2-2Q9BYT5 123 aa1.76□□□□□ -2.13
BRCA1-210ENST00000471181 KMT2DO14686 5537 aa1.76□□□□□ -2.13
BRCA1-210ENST00000471181 KRTAP5-9P26371 169 aa1.75□□□□□ -2.13
BRCA1-210ENST00000471181 DSTQ03001 7570 aaKnown RBP1.73□□□□□ -2.13
BRCA1-210ENST00000471181 MACF1Q9UPN3 7388 aaKnown RBP1.73□□□□□ -2.13
BRCA1-210ENST00000471181 KRTAP19-7Q3SYF9 63 aa1.72□□□□□ -2.13
BRCA1-210ENST00000471181 GPR98Q8WXG9 6306 aa1.71□□□□□ -2.14
BRCA1-210ENST00000471181 KRTAP9-9Q9BYP9 154 aa1.71□□□□□ -2.14
BRCA1-210ENST00000471181 KRTAP20-2Q3LI61 65 aa1.69□□□□□ -2.14
BRCA1-210ENST00000471181 KRTAP4-11Q9BYQ6 195 aa1.67□□□□□ -2.14
BRCA1-210ENST00000471181 MUC12Q9UKN1 5478 aa1.64□□□□□ -2.15
BRCA1-210ENST00000471181 KRTAP9-6A8MVA2 160 aa1.62□□□□□ -2.15
BRCA1-210ENST00000471181 NEBP20929 6669 aa1.62□□□□□ -2.15
BRCA1-210ENST00000471181 MDN1Q9NU22 5596 aa1.59□□□□□ -2.16
BRCA1-210ENST00000471181 KRTAP5-5Q701N2 237 aaPredicted RBP1.58□□□□□ -2.16
BRCA1-210ENST00000471181 KRTAP4-4Q9BYR3 166 aa1.57□□□□□ -2.16
BRCA1-210ENST00000471181 KRTAP4-12Q9BQ66 201 aa1.52□□□□□ -2.17
BRCA1-210ENST00000471181 KRTAP4-2Q9BYR5 136 aa1.52□□□□□ -2.17
BRCA1-210ENST00000471181 KRTAP5-4Q6L8H1 288 aa1.51□□□□□ -2.17
BRCA1-210ENST00000471181 MUC19Q7Z5P9 8384 aa1.44□□□□□ -2.18
BRCA1-210ENST00000471181 KRTAP5-2Q701N4 177 aa1.39□□□□□ -2.19
BRCA1-210ENST00000471181 KRTAP5-3Q6L8H2 238 aa1.37□□□□□ -2.19
BRCA1-210ENST00000471181 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.33□□□□□ -2.2
BRCA1-210ENST00000471181 HMCN1Q96RW7 5635 aa1.31□□□□□ -2.2
BRCA1-210ENST00000471181 AHNAK2Q8IVF2 5795 aa1.28□□□□□ -2.2
BRCA1-210ENST00000471181 KRTAP5-7Q6L8G8 165 aa1.24□□□□□ -2.21
BRCA1-210ENST00000471181 KRTAP5-10Q6L8G5 202 aa1.23□□□□□ -2.21
BRCA1-210ENST00000471181 KRTAP5-1Q6L8H4 278 aa1.17□□□□□ -2.22
BRCA1-210ENST00000471181 MUC5ACP98088 5654 aa1.15□□□□□ -2.22
BRCA1-210ENST00000471181 KRTAP5-8O75690 187 aa1.15□□□□□ -2.22
BRCA1-210ENST00000471181 PHGR1C9JFL3 82 aa1.15□□□□□ -2.23
BRCA1-210ENST00000471181 MUC5BQ9HC84 5762 aaPredicted RBP1.09□□□□□ -2.24
BRCA1-210ENST00000471181 AHNAKQ09666 5890 aaKnown RBP1.02□□□□□ -2.25
BRCA1-210ENST00000471181 KRTAP21-2Q3LI59 83 aa0.96□□□□□ -2.26
BRCA1-210ENST00000471181 KRTAP5-11Q6L8G4 156 aa0.94□□□□□ -2.26
BRCA1-210ENST00000471181 KRTAP21-1Q3LI58 79 aa0.87□□□□□ -2.27
BRCA1-210ENST00000471181 MUC16Q8WXI7 14507 aa0.63□□□□□ -2.31
Retrieved 77 of 20,778 RNA–protein pairs in 6.3 ms