RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 GPR98Q8WXG9 6306 aa0.6□□□□□ -2.31
CCDC88A-210ENST00000468534 CEP350Q5VT06 3117 aa0.6□□□□□ -2.31
CCDC88A-210ENST00000468534 DCHS1Q96JQ0 3298 aa0.6□□□□□ -2.31
CCDC88A-210ENST00000468534 VPS13CQ709C8 3753 aa0.6□□□□□ -2.31
CCDC88A-210ENST00000468534 STAB2Q8WWQ8 2551 aa0.59□□□□□ -2.32
CCDC88A-210ENST00000468534 CEP295Q9C0D2 2601 aa0.58□□□□□ -2.32
CCDC88A-210ENST00000468534 CENPEQ02224 2701 aa0.57□□□□□ -2.32
CCDC88A-210ENST00000468534 XIRP2A4UGR9 3374 aa0.56□□□□□ -2.32
CCDC88A-210ENST00000468534 MUC3AQ02505 3323 aa0.55□□□□□ -2.32
CCDC88A-210ENST00000468534 MDN1Q9NU22 5596 aa0.55□□□□□ -2.32
CCDC88A-210ENST00000468534 FAT4Q6V0I7 4981 aa0.55□□□□□ -2.32
CCDC88A-210ENST00000468534 SPRR2GQ9BYE4 73 aa0.54□□□□□ -2.32
CCDC88A-210ENST00000468534 LRP2P98164 4655 aa0.52□□□□□ -2.33
CCDC88A-210ENST00000468534 MT1XP80297 61 aa0.51□□□□□ -2.33
CCDC88A-210ENST00000468534 WDFY4Q6ZS81 3184 aa0.51□□□□□ -2.33
CCDC88A-210ENST00000468534 TLN1Q9Y490 2541 aaKnown RBP0.5□□□□□ -2.33
CCDC88A-210ENST00000468534 SRCAPQ6ZRS2 3230 aa0.49□□□□□ -2.33
CCDC88A-210ENST00000468534 STARD9Q9P2P6 4700 aa0.49□□□□□ -2.33
CCDC88A-210ENST00000468534 CFAP47Q6ZTR5 3102 aa0.47□□□□□ -2.33
CCDC88A-210ENST00000468534 PHGR1C9JFL3 82 aa0.47□□□□□ -2.33
CCDC88A-210ENST00000468534 USP34Q70CQ2 3546 aa0.47□□□□□ -2.33
CCDC88A-210ENST00000468534 LOC400499M0QZD8 3231 aa0.45□□□□□ -2.34
CCDC88A-210ENST00000468534 SSPOA2VEC9 5147 aa0.45□□□□□ -2.34
CCDC88A-210ENST00000468534 SPEGQ15772 3267 aa0.45□□□□□ -2.34
CCDC88A-210ENST00000468534 MYO15AQ9UKN7 3530 aa0.44□□□□□ -2.34
CCDC88A-210ENST00000468534 KMT2DO14686 5537 aa0.44□□□□□ -2.34
CCDC88A-210ENST00000468534 KMT2CQ8NEZ4 4911 aaKnown RBP0.44□□□□□ -2.34
CCDC88A-210ENST00000468534 USH2AO75445 5202 aa0.44□□□□□ -2.34
CCDC88A-210ENST00000468534 SYNE2Q8WXH0 6885 aaKnown RBP0.41□□□□□ -2.34
CCDC88A-210ENST00000468534 MT1GP13640 62 aa0.4□□□□□ -2.35
CCDC88A-210ENST00000468534 KRTAP19-8Q3LI54 63 aa0.4□□□□□ -2.35
CCDC88A-210ENST00000468534 KRTAP19-7Q3SYF9 63 aa0.4□□□□□ -2.35
CCDC88A-210ENST00000468534 DNHD1Q96M86 4753 aa0.39□□□□□ -2.35
CCDC88A-210ENST00000468534 LAMA2P24043 3122 aaKnown RBP0.39□□□□□ -2.35
CCDC88A-210ENST00000468534 ASPMQ8IZT6 3477 aa0.39□□□□□ -2.35
CCDC88A-210ENST00000468534 UTRNP46939 3433 aa0.38□□□□□ -2.35
CCDC88A-210ENST00000468534 PCLOQ9Y6V0 5065 aa0.38□□□□□ -2.35
CCDC88A-210ENST00000468534 VPS13AQ96RL7 3174 aa0.38□□□□□ -2.35
CCDC88A-210ENST00000468534 MYO9AB2RTY4 2548 aa0.38□□□□□ -2.35
CCDC88A-210ENST00000468534 FSIP2Q5CZC0 6907 aa0.37□□□□□ -2.35
CCDC88A-210ENST00000468534 EYSQ5T1H1 3165 aa0.37□□□□□ -2.35
CCDC88A-210ENST00000468534 PCNTO95613 3336 aa0.36□□□□□ -2.35
CCDC88A-210ENST00000468534 KRTAP6-1Q3LI64 71 aa0.35□□□□□ -2.35
CCDC88A-210ENST00000468534 GOLGB1Q14789 3259 aaKnown RBP0.34□□□□□ -2.36
CCDC88A-210ENST00000468534 EP400Q96L91 3159 aa0.34□□□□□ -2.36
CCDC88A-210ENST00000468534 VCANP13611 3396 aa0.32□□□□□ -2.36
CCDC88A-210ENST00000468534 RYR1P21817 5038 aa0.31□□□□□ -2.36
CCDC88A-210ENST00000468534 MT2AP02795 61 aa0.31□□□□□ -2.36
CCDC88A-210ENST00000468534 MT1MQ8N339 61 aa0.31□□□□□ -2.36
CCDC88A-210ENST00000468534 HERC2O95714 4834 aa0.29□□□□□ -2.36
CCDC88A-210ENST00000468534 MUC2Q02817 5179 aa0.28□□□□□ -2.36
CCDC88A-210ENST00000468534 UBR4Q5T4S7 5183 aa0.27□□□□□ -2.37
CCDC88A-210ENST00000468534 KRTAP19-2Q3LHN2 52 aa0.27□□□□□ -2.37
CCDC88A-210ENST00000468534 WDFY3Q8IZQ1 3526 aa0.26□□□□□ -2.37
CCDC88A-210ENST00000468534 MT1BP07438 61 aa0.26□□□□□ -2.37
CCDC88A-210ENST00000468534 MUC12Q9UKN1 5478 aa0.24□□□□□ -2.37
CCDC88A-210ENST00000468534 UNC80Q8N2C7 3258 aa0.23□□□□□ -2.37
CCDC88A-210ENST00000468534 MACF1Q9UPN3 7388 aaKnown RBP0.22□□□□□ -2.37
CCDC88A-210ENST00000468534 MT1HL1P0DM35 61 aa0.21□□□□□ -2.38
CCDC88A-210ENST00000468534 BRCA2P51587 3418 aa0.21□□□□□ -2.38
CCDC88A-210ENST00000468534 BIRC6Q9NR09 4857 aa0.21□□□□□ -2.38
CCDC88A-210ENST00000468534 RYR3Q15413 4870 aa0.19□□□□□ -2.38
CCDC88A-210ENST00000468534 DNAH14Q0VDD8 3507 aa0.17□□□□□ -2.38
CCDC88A-210ENST00000468534 HYDINQ4G0P3 5121 aa0.15□□□□□ -2.39
CCDC88A-210ENST00000468534 CENPFP49454 3210 aa0.12□□□□□ -2.39
CCDC88A-210ENST00000468534 RNF213Q63HN8 5207 aa0.11□□□□□ -2.39
CCDC88A-210ENST00000468534 MT1FP04733 61 aa0.1□□□□□ -2.39
CCDC88A-210ENST00000468534 EPPK1P58107 5090 aaKnown RBP0.04□□□□□ -2.4
CCDC88A-210ENST00000468534 MT4P47944 62 aa0.03□□□□□ -2.4
CCDC88A-210ENST00000468534 CDH23Q9H251 3354 aa0.02□□□□□ -2.41
CCDC88A-210ENST00000468534 KRTAP20-2Q3LI61 65 aa0□□□□□ -2.41
CCDC88A-210ENST00000468534 RYR2Q92736 4967 aa-0.05□□□□□ -2.42
CCDC88A-210ENST00000468534 KIAA1109Q2LD37 5005 aa-0.05□□□□□ -2.42
CCDC88A-210ENST00000468534 DSTQ03001 7570 aaKnown RBP-0.11□□□□□ -2.43
CCDC88A-210ENST00000468534 ABCA13Q86UQ4 5058 aa-0.16□□□□□ -2.44
CCDC88A-210ENST00000468534 NEBP20929 6669 aa-0.36□□□□□ -2.47
CCDC88A-210ENST00000468534 KRTAP19-6Q3LI70 58 aa-0.42□□□□□ -2.48
CCDC88A-210ENST00000468534 KRTAP20-1Q3LI63 56 aa-0.48□□□□□ -2.49
Retrieved 78 of 20,778 RNA–protein pairs in 5 ms