RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 AEBP2Q6ZN18 517 aaPredicted RBP27.79■■■□□ 2.04
CCDC88A-210ENST00000468534 CHIC1Q5VXU3 224 aa26.58■■□□□ 1.85
CCDC88A-210ENST00000468534 SENP3Q9H4L4 574 aaPredicted RBP23.64■■□□□ 1.37
CCDC88A-210ENST00000468534 PHF23Q9BUL5 403 aaPredicted RBP23.39■■□□□ 1.33
CCDC88A-210ENST00000468534 FOXD1Q16676 465 aa22.04■■□□□ 1.12
CCDC88A-210ENST00000468534 PLPPR3Q6T4P5 718 aa21.35■■□□□ 1.01
CCDC88A-210ENST00000468534 PPP6R1Q9UPN7 881 aa20.79■□□□□ 0.92
CCDC88A-210ENST00000468534 ADRA2BP18089 450 aa20.77■□□□□ 0.92
CCDC88A-210ENST00000468534 PIAS4Q8N2W9 510 aaPredicted RBP20.69■□□□□ 0.9
CCDC88A-210ENST00000468534 MSH5O43196 834 aa20.51■□□□□ 0.87
CCDC88A-210ENST00000468534 POTEDQ86YR6 584 aa19.67■□□□□ 0.74
CCDC88A-210ENST00000468534 MAPK8IP2Q13387 824 aaPredicted RBP19.01■□□□□ 0.63
CCDC88A-210ENST00000468534 SCAF1Q9H7N4 1312 aaKnown RBP18.94■□□□□ 0.62
CCDC88A-210ENST00000468534 DMRT2Q9Y5R5 561 aa18.78■□□□□ 0.6
CCDC88A-210ENST00000468534 PPP4R3CPQ6ZMV5 832 aa18.77■□□□□ 0.6
CCDC88A-210ENST00000468534 CNKSR2Q8WXI2 1034 aa18.34■□□□□ 0.53
CCDC88A-210ENST00000468534 HOXD11P31277 338 aaPredicted RBP18.15■□□□□ 0.5
CCDC88A-210ENST00000468534 DCAF8L1A6NGE4 600 aa18.14■□□□□ 0.49
CCDC88A-210ENST00000468534 RNF216Q9NWF9 866 aaPredicted RBP18.1■□□□□ 0.49
CCDC88A-210ENST00000468534 NCBP3Q53F19 620 aaKnown RBP18.09■□□□□ 0.49
CCDC88A-210ENST00000468534 NPM3O75607 178 aaKnown RBP17.85■□□□□ 0.45
CCDC88A-210ENST00000468534 KCNA4P22459 653 aa17.74■□□□□ 0.43
CCDC88A-210ENST00000468534 CACNB1Q02641 598 aaPredicted RBP17.53■□□□□ 0.4
CCDC88A-210ENST00000468534 RNF39Q9H2S5 420 aa17.52■□□□□ 0.4
CCDC88A-210ENST00000468534 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.39■□□□□ 0.371e-6■■■□□ 14.9
CCDC88A-210ENST00000468534 DNAJC5BQ9UF47 199 aa17.39■□□□□ 0.37
CCDC88A-210ENST00000468534 C1QBPQ07021 282 aaKnown RBP17.26■□□□□ 0.35
CCDC88A-210ENST00000468534 U3KPZ7 1027 aaPredicted RBP17.02■□□□□ 0.32
CCDC88A-210ENST00000468534 SLC4A2P04920 1241 aa16.98■□□□□ 0.31
CCDC88A-210ENST00000468534 SLC4A1APQ9BWU0 796 aaKnown RBP16.79■□□□□ 0.28
CCDC88A-210ENST00000468534 SPINK5Q9NQ38 1064 aaPredicted RBP16.74■□□□□ 0.27
CCDC88A-210ENST00000468534 CAPN15O75808 1086 aa16.72■□□□□ 0.27
CCDC88A-210ENST00000468534 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.57■□□□□ 0.24
CCDC88A-210ENST00000468534 HNRNPUL2Q1KMD3 747 aaKnown RBP16.57■□□□□ 0.24
CCDC88A-210ENST00000468534 APLP2Q06481 763 aa16.53■□□□□ 0.24
CCDC88A-210ENST00000468534 TRHP20396 242 aaPredicted RBP16.52■□□□□ 0.24
CCDC88A-210ENST00000468534 DSG3P32926 999 aa16.5■□□□□ 0.23
CCDC88A-210ENST00000468534 SAMD1Q6SPF0 538 aaPredicted RBP16.5■□□□□ 0.23
CCDC88A-210ENST00000468534 MYCNP04198 464 aaPredicted RBP16.49■□□□□ 0.23
CCDC88A-210ENST00000468534 FOXD4L1Q9NU39 408 aa16.45■□□□□ 0.22
CCDC88A-210ENST00000468534 ZNF219Q9P2Y4 722 aaPredicted RBP16.41■□□□□ 0.22
CCDC88A-210ENST00000468534 ABCB7O75027 752 aa16.38■□□□□ 0.21
CCDC88A-210ENST00000468534 ZBTB22O15209 634 aa16.3■□□□□ 0.2
CCDC88A-210ENST00000468534 ATF5Q9Y2D1 282 aaPredicted RBP16.14■□□□□ 0.17
CCDC88A-210ENST00000468534 POLA2Q14181 598 aa16.09■□□□□ 0.17
CCDC88A-210ENST00000468534 ATXN8OSP0DMR3 200 aa15.85■□□□□ 0.13
CCDC88A-210ENST00000468534 EHMT2Q96KQ7 1210 aa15.76■□□□□ 0.11
CCDC88A-210ENST00000468534 CSRNP3Q8WYN3 585 aa15.74■□□□□ 0.11
CCDC88A-210ENST00000468534 RBM42Q9BTD8 480 aaKnown RBP15.73■□□□□ 0.11
CCDC88A-210ENST00000468534 ZBTB12Q9Y330 459 aaPredicted RBP15.72■□□□□ 0.11
CCDC88A-210ENST00000468534 OSCARQ8IYS5 282 aa15.58■□□□□ 0.08
CCDC88A-210ENST00000468534 FBLN2P98095 1184 aa15.48■□□□□ 0.07
CCDC88A-210ENST00000468534 POTEHQ6S545 545 aa15.47■□□□□ 0.07
CCDC88A-210ENST00000468534 AKT1S1Q96B36 256 aa15.4■□□□□ 0.06
CCDC88A-210ENST00000468534 MKRN4PQ13434 485 aaPredicted RBP15.38■□□□□ 0.05
CCDC88A-210ENST00000468534 CHRDL2Q6WN34 429 aa15.32■□□□□ 0.04
CCDC88A-210ENST00000468534 REM2Q8IYK8 340 aaPredicted RBP15.29■□□□□ 0.04
CCDC88A-210ENST00000468534 SPDYE2BA6NHP3 402 aa15.25■□□□□ 0.03
CCDC88A-210ENST00000468534 SPDYE6P0CI01 402 aa15.25■□□□□ 0.03
CCDC88A-210ENST00000468534 SPDYE2Q495Y8 402 aa15.25■□□□□ 0.03
CCDC88A-210ENST00000468534 ZNF692Q9BU19 519 aaPredicted RBP15.16■□□□□ 0.02
CCDC88A-210ENST00000468534 PITPNM1O00562 1244 aa15.15■□□□□ 0.02
CCDC88A-210ENST00000468534 SSUH2Q9Y2M2 353 aa15.07■□□□□ 0
CCDC88A-210ENST00000468534 PIP4P2Q8N4L2 257 aa15.01□□□□□ -0.01
CCDC88A-210ENST00000468534 CLEC11AQ9Y240 323 aa15.01□□□□□ -0.01
CCDC88A-210ENST00000468534 PABPN1Q86U42 306 aaKnown RBP eCLIP14.96□□□□□ -0.01
CCDC88A-210ENST00000468534 SPDYE1Q8NFV5 336 aaPredicted RBP14.95□□□□□ -0.02
CCDC88A-210ENST00000468534 FXR2P51116 673 aaKnown RBP eCLIP14.91□□□□□ -0.022e-10■□□□□ 9.4
CCDC88A-210ENST00000468534 SPDYE4A6NLX3 237 aa14.79□□□□□ -0.04
CCDC88A-210ENST00000468534 PRKAR2AP13861 404 aaKnown RBP14.77□□□□□ -0.05
CCDC88A-210ENST00000468534 PRR29P0C7W0 189 aa14.75□□□□□ -0.05
CCDC88A-210ENST00000468534 HAX1O00165 279 aa14.72□□□□□ -0.05
CCDC88A-210ENST00000468534 CHADLQ6NUI6 762 aa14.68□□□□□ -0.06
CCDC88A-210ENST00000468534 SP7Q8TDD2 431 aaPredicted RBP14.6□□□□□ -0.07
CCDC88A-210ENST00000468534 EVX2Q03828 476 aa14.53□□□□□ -0.08
CCDC88A-210ENST00000468534 STAG3Q9UJ98 1225 aa14.53□□□□□ -0.08
CCDC88A-210ENST00000468534 C19orf67A6NJJ6 358 aa14.44□□□□□ -0.1
CCDC88A-210ENST00000468534 FARP1Q9Y4F1 1045 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-210ENST00000468534 CREBZFQ9NS37 354 aa14.4□□□□□ -0.1
CCDC88A-210ENST00000468534 PROM2Q8N271 834 aa14.36□□□□□ -0.11
CCDC88A-210ENST00000468534 FKBP8Q14318 412 aa14.32□□□□□ -0.12
CCDC88A-210ENST00000468534 CD44P16070 742 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-210ENST00000468534 GABBR2O75899 941 aa14.2□□□□□ -0.14
CCDC88A-210ENST00000468534 ZRANB1Q9UGI0 708 aa14.16□□□□□ -0.14
CCDC88A-210ENST00000468534 NPM1P06748 294 aaKnown RBP eCLIP14.14□□□□□ -0.15
CCDC88A-210ENST00000468534 MNX1P50219 401 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-210ENST00000468534 MIER1Q8N108 512 aa14.11□□□□□ -0.15
CCDC88A-210ENST00000468534 PAK3O75914 559 aaPredicted RBP14.08□□□□□ -0.16
CCDC88A-210ENST00000468534 PLEKHG5O94827 1062 aa14.06□□□□□ -0.16
CCDC88A-210ENST00000468534 ZNF579Q8NAF0 562 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-210ENST00000468534 PLCD3Q8N3E9 789 aa14.03□□□□□ -0.16
CCDC88A-210ENST00000468534 PHF12Q96QT6 1004 aa14□□□□□ -0.17
CCDC88A-210ENST00000468534 TSPYL2Q9H2G4 693 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-210ENST00000468534 CLCN6P51797 869 aa13.95□□□□□ -0.18
CCDC88A-210ENST00000468534 GALR2O43603 387 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-210ENST00000468534 DCBLD2Q96PD2 775 aa13.9□□□□□ -0.18
CCDC88A-210ENST00000468534 POTEIP0CG38 1075 aa13.89□□□□□ -0.19
CCDC88A-210ENST00000468534 FBXO3Q9UK99 471 aa13.89□□□□□ -0.19
CCDC88A-210ENST00000468534 RASEFQ8IZ41 740 aa13.86□□□□□ -0.19
CCDC88A-210ENST00000468534 ZBTB47Q9UFB7 747 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms