RNA–Protein interactions for RNA: ENST00000465425.1

SYNE4-204, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 2

Gene SYNE4, Length 2,339 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-204ENST00000465425 KRTAP2-4Q9BYR9 128 aa6.2□□□□□ -1.42
SYNE4-204ENST00000465425 KRTAP2-1Q9BYU5 128 aa6.2□□□□□ -1.42
SYNE4-204ENST00000465425 FCGBPQ9Y6R7 5405 aaPredicted RBP6.02□□□□□ -1.45
SYNE4-204ENST00000465425 KRTAP19-3Q7Z4W3 81 aa5.99□□□□□ -1.45
SYNE4-204ENST00000465425 KRTAP4-3Q9BYR4 195 aa5.98□□□□□ -1.45
SYNE4-204ENST00000465425 MT1GP13640 62 aa5.97□□□□□ -1.45
SYNE4-204ENST00000465425 LOC100996750A0A140TA64 210 aa5.96□□□□□ -1.46
SYNE4-204ENST00000465425 MT1MQ8N339 61 aa5.96□□□□□ -1.46
SYNE4-204ENST00000465425 MUC12Q9UKN1 5478 aa5.94□□□□□ -1.46
SYNE4-204ENST00000465425 CRCT1Q9UGL9 99 aa5.83□□□□□ -1.48
SYNE4-204ENST00000465425 SPRR2FQ96RM1 72 aa5.81□□□□□ -1.48
SYNE4-204ENST00000465425 LCE5AQ5TCM9 118 aa5.77□□□□□ -1.49
SYNE4-204ENST00000465425 KRTAP9-2Q9BYQ4 174 aa5.76□□□□□ -1.49
SYNE4-204ENST00000465425 DSTQ03001 7570 aaKnown RBP5.7□□□□□ -1.5
SYNE4-204ENST00000465425 MACF1Q9UPN3 7388 aaKnown RBP5.64□□□□□ -1.51
SYNE4-204ENST00000465425 KRTAP12-4P60329 112 aa5.5□□□□□ -1.53
SYNE4-204ENST00000465425 LCE3BQ5TA77 95 aa5.49□□□□□ -1.53
SYNE4-204ENST00000465425 SYNE2Q8WXH0 6885 aaKnown RBP5.48□□□□□ -1.53
SYNE4-204ENST00000465425 MDN1Q9NU22 5596 aa5.45□□□□□ -1.54
SYNE4-204ENST00000465425 KRTAP5-9P26371 169 aa5.43□□□□□ -1.54
SYNE4-204ENST00000465425 KRTAP6-1Q3LI64 71 aa5.39□□□□□ -1.55
SYNE4-204ENST00000465425 LCE1AQ5T7P2 110 aa5.39□□□□□ -1.55
SYNE4-204ENST00000465425 MT1AP04731 61 aa5.35□□□□□ -1.55
SYNE4-204ENST00000465425 KRTAP4-9Q9BYQ8 210 aa5.32□□□□□ -1.56
SYNE4-204ENST00000465425 SPRR2EP22531 72 aa5.29□□□□□ -1.56
SYNE4-204ENST00000465425 SPRR2BP35325 72 aa5.29□□□□□ -1.56
SYNE4-204ENST00000465425 SPRR2AP35326 72 aa5.29□□□□□ -1.56
SYNE4-204ENST00000465425 SYNE1Q8NF91 8797 aaKnown RBP5.26□□□□□ -1.57
SYNE4-204ENST00000465425 KRTAP9-6A0A140TA67 174 aa5.25□□□□□ -1.57
SYNE4-204ENST00000465425 KRTAP5-5Q701N2 237 aaPredicted RBP5.25□□□□□ -1.57
SYNE4-204ENST00000465425 LCE3DQ9BYE3 92 aa5.19□□□□□ -1.58
SYNE4-204ENST00000465425 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.15□□□□□ -1.58
SYNE4-204ENST00000465425 KRTAP6-3Q3LI67 103 aa5.11□□□□□ -1.59
SYNE4-204ENST00000465425 LCE3EQ5T5B0 92 aa5.11□□□□□ -1.59
SYNE4-204ENST00000465425 KRTAP4-6Q9BYQ5 205 aa5.1□□□□□ -1.59
SYNE4-204ENST00000465425 SPRR2DP22532 72 aa5.07□□□□□ -1.6
SYNE4-204ENST00000465425 KRTAP9-4Q9BYQ2 154 aa5.04□□□□□ -1.6
SYNE4-204ENST00000465425 KRTAP9-7A8MTY7 169 aa4.89□□□□□ -1.63
SYNE4-204ENST00000465425 PRM1P04553 51 aa4.85□□□□□ -1.63
SYNE4-204ENST00000465425 KRTAP6-2Q3LI66 62 aa4.85□□□□□ -1.63
SYNE4-204ENST00000465425 MT3P25713 68 aa4.84□□□□□ -1.64
SYNE4-204ENST00000465425 LCE4AQ5TA78 99 aa4.83□□□□□ -1.64
SYNE4-204ENST00000465425 KRTAP4-12Q9BQ66 201 aa4.79□□□□□ -1.64
SYNE4-204ENST00000465425 NEBP20929 6669 aa4.74□□□□□ -1.65
SYNE4-204ENST00000465425 OBSCNQ5VST9 7968 aa4.73□□□□□ -1.65
SYNE4-204ENST00000465425 KRTAP5-4Q6L8H1 288 aa4.64□□□□□ -1.67
SYNE4-204ENST00000465425 KRTAP9-9Q9BYP9 154 aa4.61□□□□□ -1.67
SYNE4-204ENST00000465425 MT4P47944 62 aa4.46□□□□□ -1.7
SYNE4-204ENST00000465425 KRTAP20-2Q3LI61 65 aa4.38□□□□□ -1.71
SYNE4-204ENST00000465425 KRTAP5-2Q701N4 177 aa4.32□□□□□ -1.72
SYNE4-204ENST00000465425 KRTAP2-2Q9BYT5 123 aa4.32□□□□□ -1.72
SYNE4-204ENST00000465425 LCE1DQ5T752 114 aa4.28□□□□□ -1.72
SYNE4-204ENST00000465425 KRTAP20-1Q3LI63 56 aa4.26□□□□□ -1.73
SYNE4-204ENST00000465425 HMCN1Q96RW7 5635 aa4.22□□□□□ -1.73
SYNE4-204ENST00000465425 KRTAP5-3Q6L8H2 238 aa4.18□□□□□ -1.74
SYNE4-204ENST00000465425 KRTAP4-11Q9BYQ6 195 aa4.07□□□□□ -1.76
SYNE4-204ENST00000465425 KRTAP4-2Q9BYR5 136 aa4.06□□□□□ -1.76
SYNE4-204ENST00000465425 MUC5ACP98088 5654 aa4.02□□□□□ -1.77
SYNE4-204ENST00000465425 LCE1EQ5T753 118 aa3.95□□□□□ -1.78
SYNE4-204ENST00000465425 LCE1BQ5T7P3 118 aa3.9□□□□□ -1.78
SYNE4-204ENST00000465425 KRTAP5-10Q6L8G5 202 aa3.77□□□□□ -1.81
SYNE4-204ENST00000465425 LCE1CQ5T751 118 aa3.73□□□□□ -1.81
SYNE4-204ENST00000465425 KRTAP5-1Q6L8H4 278 aa3.73□□□□□ -1.81
SYNE4-204ENST00000465425 AHNAK2Q8IVF2 5795 aa3.57□□□□□ -1.84
SYNE4-204ENST00000465425 KRTAP5-8O75690 187 aa3.53□□□□□ -1.84
SYNE4-204ENST00000465425 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.5□□□□□ -1.85
SYNE4-204ENST00000465425 KRTAP21-2Q3LI59 83 aa3.47□□□□□ -1.85
SYNE4-204ENST00000465425 KRTAP5-7Q6L8G8 165 aa3.44□□□□□ -1.86
SYNE4-204ENST00000465425 LCE1FQ5T754 118 aa3.22□□□□□ -1.89
SYNE4-204ENST00000465425 KRTAP5-11Q6L8G4 156 aa3.21□□□□□ -1.9
SYNE4-204ENST00000465425 GPR98Q8WXG9 6306 aa3.2□□□□□ -1.9
SYNE4-204ENST00000465425 KRTAP4-4Q9BYR3 166 aa3.17□□□□□ -1.9
SYNE4-204ENST00000465425 MUC5BQ9HC84 5762 aaPredicted RBP3.09□□□□□ -1.91
SYNE4-204ENST00000465425 KRTAP21-1Q3LI58 79 aa3.02□□□□□ -1.93
SYNE4-204ENST00000465425 MUC19Q7Z5P9 8384 aa2.97□□□□□ -1.93
SYNE4-204ENST00000465425 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
SYNE4-204ENST00000465425 AHNAKQ09666 5890 aaKnown RBP2.65□□□□□ -1.98
SYNE4-204ENST00000465425 MUC16Q8WXI7 14507 aa1.83□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 9.5 ms