RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	KRTAP19-7	Q3SYF9	63 aa		3.87	□□□□□ -1.79
RBM39-223	ENST00000463004	MT1M	Q8N339	61 aa		3.87	□□□□□ -1.79
RBM39-223	ENST00000463004	KRTAP12-4	P60329	112 aa		3.86	□□□□□ -1.79
RBM39-223	ENST00000463004	KRTAP9-6	A0A140TA67	174 aa		3.83	□□□□□ -1.8
RBM39-223	ENST00000463004	LCE1A	Q5T7P2	110 aa		3.79	□□□□□ -1.8
RBM39-223	ENST00000463004	KRTAP6-3	Q3LI67	103 aa		3.75	□□□□□ -1.81
RBM39-223	ENST00000463004	LCE3B	Q5TA77	95 aa		3.71	□□□□□ -1.82
RBM39-223	ENST00000463004	KRTAP4-7	Q9BYR0	210 aa		3.71	□□□□□ -1.82
RBM39-223	ENST00000463004	MUC2	Q02817	5179 aa		3.66	□□□□□ -1.82
RBM39-223	ENST00000463004	LCE5A	Q5TCM9	118 aa		3.61	□□□□□ -1.83
RBM39-223	ENST00000463004	LCE3D	Q9BYE3	92 aa		3.61	□□□□□ -1.83
RBM39-223	ENST00000463004	MT1A	P04731	61 aa		3.61	□□□□□ -1.83
RBM39-223	ENST00000463004	MT3	P25713	68 aa		3.59	□□□□□ -1.83
RBM39-223	ENST00000463004	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	3.59	□□□□□ -1.84
RBM39-223	ENST00000463004	LCE3E	Q5T5B0	92 aa		3.57	□□□□□ -1.84
RBM39-223	ENST00000463004	KRTAP9-7	A8MTY7	169 aa		3.56	□□□□□ -1.84
RBM39-223	ENST00000463004	USH2A	O75445	5202 aa		3.55	□□□□□ -1.84
RBM39-223	ENST00000463004	KRTAP4-3	Q9BYR4	195 aa		3.53	□□□□□ -1.84
RBM39-223	ENST00000463004	KRTAP2-3	P0C7H8	128 aa		3.53	□□□□□ -1.84
RBM39-223	ENST00000463004	KRTAP2-4	Q9BYR9	128 aa		3.53	□□□□□ -1.84
RBM39-223	ENST00000463004	KRTAP2-1	Q9BYU5	128 aa		3.53	□□□□□ -1.84
RBM39-223	ENST00000463004	FSIP2	Q5CZC0	6907 aa		3.49	□□□□□ -1.85
RBM39-223	ENST00000463004	LOC100996750	A0A140TA64	210 aa		3.48	□□□□□ -1.85
RBM39-223	ENST00000463004	KRTAP5-9	P26371	169 aa		3.47	□□□□□ -1.85
RBM39-223	ENST00000463004	KRTAP20-1	Q3LI63	56 aa		3.44	□□□□□ -1.86
RBM39-223	ENST00000463004	LCE4A	Q5TA78	99 aa		3.43	□□□□□ -1.86
RBM39-223	ENST00000463004	KRTAP9-6	A8MVA2	160 aa		3.39	□□□□□ -1.87
RBM39-223	ENST00000463004	MT4	P47944	62 aa		3.37	□□□□□ -1.87
RBM39-223	ENST00000463004	KRTAP2-2	Q9BYT5	123 aa		3.37	□□□□□ -1.87
RBM39-223	ENST00000463004	KRTAP9-4	Q9BYQ2	154 aa		3.33	□□□□□ -1.88
RBM39-223	ENST00000463004	KRTAP6-1	Q3LI64	71 aa		3.29	□□□□□ -1.88
RBM39-223	ENST00000463004	SSPO	A2VEC9	5147 aa		3.28	□□□□□ -1.88
RBM39-223	ENST00000463004	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.27	□□□□□ -1.89
RBM39-223	ENST00000463004	SYNE2	Q8WXH0	6885 aa	Known RBP	3.25	□□□□□ -1.89
RBM39-223	ENST00000463004	SYNE1	Q8NF91	8797 aa	Known RBP	3.22	□□□□□ -1.89
RBM39-223	ENST00000463004	KRTAP6-2	Q3LI66	62 aa		3.17	□□□□□ -1.9
RBM39-223	ENST00000463004	MACF1	Q9UPN3	7388 aa	Known RBP	3.12	□□□□□ -1.91
RBM39-223	ENST00000463004	LCE1D	Q5T752	114 aa		3.09	□□□□□ -1.91
RBM39-223	ENST00000463004	PRM1	P04553	51 aa		3.07	□□□□□ -1.92
RBM39-223	ENST00000463004	KRTAP4-9	Q9BYQ8	210 aa		3.07	□□□□□ -1.92
RBM39-223	ENST00000463004	NEB	P20929	6669 aa		3.06	□□□□□ -1.92
RBM39-223	ENST00000463004	OBSCN	Q5VST9	7968 aa		3.03	□□□□□ -1.92
RBM39-223	ENST00000463004	LCE1B	Q5T7P3	118 aa		3.03	□□□□□ -1.92
RBM39-223	ENST00000463004	KMT2D	O14686	5537 aa		3.02	□□□□□ -1.93
RBM39-223	ENST00000463004	KRTAP20-2	Q3LI61	65 aa		2.92	□□□□□ -1.94
RBM39-223	ENST00000463004	MUC12	Q9UKN1	5478 aa		2.92	□□□□□ -1.94
RBM39-223	ENST00000463004	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.92	□□□□□ -1.94
RBM39-223	ENST00000463004	MDN1	Q9NU22	5596 aa		2.89	□□□□□ -1.95
RBM39-223	ENST00000463004	KRTAP5-4	Q6L8H1	288 aa		2.88	□□□□□ -1.95
RBM39-223	ENST00000463004	DST	Q03001	7570 aa	Known RBP	2.84	□□□□□ -1.95
RBM39-223	ENST00000463004	KRTAP4-6	Q9BYQ5	205 aa		2.83	□□□□□ -1.96
RBM39-223	ENST00000463004	LCE1E	Q5T753	118 aa		2.71	□□□□□ -1.98
RBM39-223	ENST00000463004	KRTAP9-9	Q9BYP9	154 aa		2.69	□□□□□ -1.98
RBM39-223	ENST00000463004	KRTAP4-11	Q9BYQ6	195 aa		2.59	□□□□□ -1.99
RBM39-223	ENST00000463004	KRTAP5-2	Q701N4	177 aa		2.52	□□□□□ -2.01
RBM39-223	ENST00000463004	GPR98	Q8WXG9	6306 aa		2.51	□□□□□ -2.01
RBM39-223	ENST00000463004	KRTAP5-3	Q6L8H2	238 aa		2.5	□□□□□ -2.01
RBM39-223	ENST00000463004	LCE1C	Q5T751	118 aa		2.46	□□□□□ -2.02
RBM39-223	ENST00000463004	LCE1F	Q5T754	118 aa		2.46	□□□□□ -2.02
RBM39-223	ENST00000463004	HMCN1	Q96RW7	5635 aa		2.27	□□□□□ -2.05
RBM39-223	ENST00000463004	KRTAP4-12	Q9BQ66	201 aa		2.26	□□□□□ -2.05
RBM39-223	ENST00000463004	KRTAP5-8	O75690	187 aa		2.24	□□□□□ -2.05
RBM39-223	ENST00000463004	AHNAK2	Q8IVF2	5795 aa		2.23	□□□□□ -2.05
RBM39-223	ENST00000463004	MUC19	Q7Z5P9	8384 aa		2.19	□□□□□ -2.06
RBM39-223	ENST00000463004	MUC5AC	P98088	5654 aa		2.19	□□□□□ -2.06
RBM39-223	ENST00000463004	KRTAP4-2	Q9BYR5	136 aa		2.16	□□□□□ -2.06
RBM39-223	ENST00000463004	KRTAP5-1	Q6L8H4	278 aa		2.12	□□□□□ -2.07
RBM39-223	ENST00000463004	KRTAP5-10	Q6L8G5	202 aa		2.11	□□□□□ -2.07
RBM39-223	ENST00000463004	KRTAP5-11	Q6L8G4	156 aa		2.09	□□□□□ -2.07
RBM39-223	ENST00000463004	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.06	□□□□□ -2.08
RBM39-223	ENST00000463004	KRTAP4-4	Q9BYR3	166 aa		2.06	□□□□□ -2.08
RBM39-223	ENST00000463004	KRTAP5-7	Q6L8G8	165 aa		2.02	□□□□□ -2.09
RBM39-223	ENST00000463004	MUC5B	Q9HC84	5762 aa	Predicted RBP	1.95	□□□□□ -2.1
RBM39-223	ENST00000463004	KRTAP21-2	Q3LI59	83 aa		1.92	□□□□□ -2.1
RBM39-223	ENST00000463004	AHNAK	Q09666	5890 aa	Known RBP	1.91	□□□□□ -2.1
RBM39-223	ENST00000463004	PHGR1	C9JFL3	82 aa		1.72	□□□□□ -2.13
RBM39-223	ENST00000463004	KRTAP21-1	Q3LI58	79 aa		1.57	□□□□□ -2.16
RBM39-223	ENST00000463004	MUC16	Q8WXI7	14507 aa		1.1	□□□□□ -2.23

Retrieved 78 of 20,778 RNA–protein pairs in 64.8 ms