RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 KRTAP2-4Q9BYR9 128 aa5.05□□□□□ -1.6
LDLR-202ENST00000455727 KRTAP2-1Q9BYU5 128 aa5.05□□□□□ -1.6
LDLR-202ENST00000455727 MT1GP13640 62 aa5.01□□□□□ -1.61
LDLR-202ENST00000455727 KRTAP19-3Q7Z4W3 81 aa5.01□□□□□ -1.61
LDLR-202ENST00000455727 MT1MQ8N339 61 aa4.97□□□□□ -1.61
LDLR-202ENST00000455727 KRTAP4-3Q9BYR4 195 aa4.92□□□□□ -1.62
LDLR-202ENST00000455727 MUC12Q9UKN1 5478 aa4.9□□□□□ -1.62
LDLR-202ENST00000455727 LCE5AQ5TCM9 118 aa4.88□□□□□ -1.63
LDLR-202ENST00000455727 SPRR2FQ96RM1 72 aa4.86□□□□□ -1.63
LDLR-202ENST00000455727 LOC100996750A0A140TA64 210 aa4.85□□□□□ -1.63
LDLR-202ENST00000455727 MACF1Q9UPN3 7388 aaKnown RBP4.8□□□□□ -1.64
LDLR-202ENST00000455727 KRTAP9-2Q9BYQ4 174 aa4.75□□□□□ -1.65
LDLR-202ENST00000455727 KRTAP5-9P26371 169 aa4.67□□□□□ -1.66
LDLR-202ENST00000455727 CRCT1Q9UGL9 99 aa4.67□□□□□ -1.66
LDLR-202ENST00000455727 DSTQ03001 7570 aaKnown RBP4.61□□□□□ -1.67
LDLR-202ENST00000455727 LCE1AQ5T7P2 110 aa4.61□□□□□ -1.67
LDLR-202ENST00000455727 SYNE2Q8WXH0 6885 aaKnown RBP4.58□□□□□ -1.68
LDLR-202ENST00000455727 MDN1Q9NU22 5596 aa4.51□□□□□ -1.69
LDLR-202ENST00000455727 SPRR2EP22531 72 aa4.48□□□□□ -1.69
LDLR-202ENST00000455727 SPRR2BP35325 72 aa4.48□□□□□ -1.69
LDLR-202ENST00000455727 SPRR2AP35326 72 aa4.48□□□□□ -1.69
LDLR-202ENST00000455727 MT1AP04731 61 aa4.47□□□□□ -1.69
LDLR-202ENST00000455727 KRTAP6-1Q3LI64 71 aa4.45□□□□□ -1.7
LDLR-202ENST00000455727 KRTAP5-5Q701N2 237 aaPredicted RBP4.45□□□□□ -1.7
LDLR-202ENST00000455727 LCE3BQ5TA77 95 aa4.43□□□□□ -1.7
LDLR-202ENST00000455727 KRTAP12-4P60329 112 aa4.38□□□□□ -1.71
LDLR-202ENST00000455727 KRTAP6-3Q3LI67 103 aa4.35□□□□□ -1.71
LDLR-202ENST00000455727 SPRR2DP22532 72 aa4.3□□□□□ -1.72
LDLR-202ENST00000455727 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.3□□□□□ -1.72
LDLR-202ENST00000455727 KRTAP4-9Q9BYQ8 210 aa4.27□□□□□ -1.73
LDLR-202ENST00000455727 SYNE1Q8NF91 8797 aaKnown RBP4.23□□□□□ -1.73
LDLR-202ENST00000455727 KRTAP9-4Q9BYQ2 154 aa4.22□□□□□ -1.73
LDLR-202ENST00000455727 LCE3DQ9BYE3 92 aa4.2□□□□□ -1.74
LDLR-202ENST00000455727 KRTAP9-6A0A140TA67 174 aa4.17□□□□□ -1.74
LDLR-202ENST00000455727 LCE3EQ5T5B0 92 aa4.13□□□□□ -1.75
LDLR-202ENST00000455727 MT3P25713 68 aa4.03□□□□□ -1.77
LDLR-202ENST00000455727 KRTAP5-4Q6L8H1 288 aa4.02□□□□□ -1.77
LDLR-202ENST00000455727 KRTAP6-2Q3LI66 62 aa4.01□□□□□ -1.77
LDLR-202ENST00000455727 NEBP20929 6669 aa3.98□□□□□ -1.77
LDLR-202ENST00000455727 KRTAP9-7A8MTY7 169 aa3.9□□□□□ -1.78
LDLR-202ENST00000455727 PRM1P04553 51 aa3.87□□□□□ -1.79
LDLR-202ENST00000455727 LCE4AQ5TA78 99 aa3.82□□□□□ -1.8
LDLR-202ENST00000455727 KRTAP4-6Q9BYQ5 205 aa3.78□□□□□ -1.8
LDLR-202ENST00000455727 MT4P47944 62 aa3.73□□□□□ -1.81
LDLR-202ENST00000455727 KRTAP20-2Q3LI61 65 aa3.73□□□□□ -1.81
LDLR-202ENST00000455727 KRTAP5-2Q701N4 177 aa3.73□□□□□ -1.81
LDLR-202ENST00000455727 OBSCNQ5VST9 7968 aa3.71□□□□□ -1.81
LDLR-202ENST00000455727 KRTAP2-2Q9BYT5 123 aa3.66□□□□□ -1.82
LDLR-202ENST00000455727 KRTAP20-1Q3LI63 56 aa3.61□□□□□ -1.83
LDLR-202ENST00000455727 LCE1DQ5T752 114 aa3.59□□□□□ -1.83
LDLR-202ENST00000455727 KRTAP5-3Q6L8H2 238 aa3.59□□□□□ -1.84
LDLR-202ENST00000455727 HMCN1Q96RW7 5635 aa3.58□□□□□ -1.84
LDLR-202ENST00000455727 LCE1EQ5T753 118 aa3.39□□□□□ -1.87
LDLR-202ENST00000455727 MUC5ACP98088 5654 aa3.3□□□□□ -1.88
LDLR-202ENST00000455727 KRTAP5-10Q6L8G5 202 aa3.2□□□□□ -1.9
LDLR-202ENST00000455727 LCE1BQ5T7P3 118 aa3.19□□□□□ -1.9
LDLR-202ENST00000455727 LCE1CQ5T751 118 aa3.18□□□□□ -1.9
LDLR-202ENST00000455727 KRTAP5-1Q6L8H4 278 aa3.16□□□□□ -1.9
LDLR-202ENST00000455727 KRTAP4-2Q9BYR5 136 aa3.15□□□□□ -1.9
LDLR-202ENST00000455727 KRTAP4-11Q9BYQ6 195 aa3.12□□□□□ -1.91
LDLR-202ENST00000455727 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.02□□□□□ -1.93
LDLR-202ENST00000455727 KRTAP5-8O75690 187 aa3□□□□□ -1.93
LDLR-202ENST00000455727 KRTAP5-7Q6L8G8 165 aa3□□□□□ -1.93
LDLR-202ENST00000455727 AHNAK2Q8IVF2 5795 aa2.93□□□□□ -1.94
LDLR-202ENST00000455727 KRTAP21-2Q3LI59 83 aa2.91□□□□□ -1.94
LDLR-202ENST00000455727 KRTAP5-11Q6L8G4 156 aa2.75□□□□□ -1.97
LDLR-202ENST00000455727 LCE1FQ5T754 118 aa2.68□□□□□ -1.98
LDLR-202ENST00000455727 KRTAP4-12Q9BQ66 201 aa2.68□□□□□ -1.98
LDLR-202ENST00000455727 KRTAP9-9Q9BYP9 154 aa2.63□□□□□ -1.99
LDLR-202ENST00000455727 GPR98Q8WXG9 6306 aa2.58□□□□□ -2
LDLR-202ENST00000455727 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
LDLR-202ENST00000455727 MUC5BQ9HC84 5762 aaPredicted RBP2.54□□□□□ -2
LDLR-202ENST00000455727 KRTAP21-1Q3LI58 79 aa2.45□□□□□ -2.02
LDLR-202ENST00000455727 PHGR1C9JFL3 82 aa2.36□□□□□ -2.03
LDLR-202ENST00000455727 MUC19Q7Z5P9 8384 aa2.28□□□□□ -2.04
LDLR-202ENST00000455727 AHNAKQ09666 5890 aaKnown RBP2.11□□□□□ -2.07
LDLR-202ENST00000455727 MUC16Q8WXI7 14507 aa1.56□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 154 ms