RNA–Protein interactions for RNA: ENST00000443617.6

HERC1-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HERC1, Length 15,137 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-201ENST00000443617 KRTAP19-7Q3SYF9 63 aa1.6□□□□□ -2.15
HERC1-201ENST00000443617 LCE2BO14633 110 aa1.59□□□□□ -2.16
HERC1-201ENST00000443617 MT1GP13640 62 aa1.59□□□□□ -2.16
HERC1-201ENST00000443617 LOC100996750A0A140TA64 210 aa1.58□□□□□ -2.16
HERC1-201ENST00000443617 LCE3BQ5TA77 95 aa1.56□□□□□ -2.16
HERC1-201ENST00000443617 USH2AO75445 5202 aa1.55□□□□□ -2.16
HERC1-201ENST00000443617 KMT2DO14686 5537 aa1.54□□□□□ -2.16
HERC1-201ENST00000443617 KRTAP4-3Q9BYR4 195 aa1.54□□□□□ -2.16
HERC1-201ENST00000443617 LCE3EQ5T5B0 92 aa1.53□□□□□ -2.16
HERC1-201ENST00000443617 PRM1P04553 51 aa1.52□□□□□ -2.17
HERC1-201ENST00000443617 LCE3DQ9BYE3 92 aa1.51□□□□□ -2.17
HERC1-201ENST00000443617 MT1MQ8N339 61 aa1.51□□□□□ -2.17
HERC1-201ENST00000443617 MT1AP04731 61 aa1.5□□□□□ -2.17
HERC1-201ENST00000443617 KRTAP4-9Q9BYQ8 210 aa1.5□□□□□ -2.17
HERC1-201ENST00000443617 KRTAP19-3Q7Z4W3 81 aa1.48□□□□□ -2.17
HERC1-201ENST00000443617 KRTAP9-6A0A140TA67 174 aa1.48□□□□□ -2.17
HERC1-201ENST00000443617 KRTAP9-7A8MTY7 169 aa1.47□□□□□ -2.17
HERC1-201ENST00000443617 KRTAP9-2Q9BYQ4 174 aa1.46□□□□□ -2.18
HERC1-201ENST00000443617 LCE2DQ5TA82 110 aaPredicted RBP1.46□□□□□ -2.18
HERC1-201ENST00000443617 KRTAP20-1Q3LI63 56 aa1.45□□□□□ -2.18
HERC1-201ENST00000443617 FCGBPQ9Y6R7 5405 aaPredicted RBP1.42□□□□□ -2.18
HERC1-201ENST00000443617 MDN1Q9NU22 5596 aa1.42□□□□□ -2.18
HERC1-201ENST00000443617 KRTAP5-5Q701N2 237 aaPredicted RBP1.42□□□□□ -2.18
HERC1-201ENST00000443617 KRTAP6-2Q3LI66 62 aa1.41□□□□□ -2.18
HERC1-201ENST00000443617 MT4P47944 62 aa1.41□□□□□ -2.18
HERC1-201ENST00000443617 MUC12Q9UKN1 5478 aa1.4□□□□□ -2.19
HERC1-201ENST00000443617 KRTAP6-3Q3LI67 103 aa1.39□□□□□ -2.19
HERC1-201ENST00000443617 KRTAP6-1Q3LI64 71 aa1.39□□□□□ -2.19
HERC1-201ENST00000443617 KRTAP2-2Q9BYT5 123 aa1.39□□□□□ -2.19
HERC1-201ENST00000443617 KRTAP19-6Q3LI70 58 aa1.37□□□□□ -2.19
HERC1-201ENST00000443617 LCE5AQ5TCM9 118 aa1.36□□□□□ -2.19
HERC1-201ENST00000443617 LCE1AQ5T7P2 110 aa1.35□□□□□ -2.19
HERC1-201ENST00000443617 LCE1DQ5T752 114 aa1.34□□□□□ -2.19
HERC1-201ENST00000443617 SYNE1Q8NF91 8797 aaKnown RBP1.34□□□□□ -2.2
HERC1-201ENST00000443617 FSIP2Q5CZC0 6907 aa1.33□□□□□ -2.2
HERC1-201ENST00000443617 GPR98Q8WXG9 6306 aa1.33□□□□□ -2.2
HERC1-201ENST00000443617 SSPOA2VEC9 5147 aa1.33□□□□□ -2.2
HERC1-201ENST00000443617 LCE2AQ5TA79 106 aaPredicted RBP1.31□□□□□ -2.2
HERC1-201ENST00000443617 AHNAK2Q8IVF2 5795 aa1.31□□□□□ -2.2
HERC1-201ENST00000443617 MACF1Q9UPN3 7388 aaKnown RBP1.3□□□□□ -2.2
HERC1-201ENST00000443617 SYNE2Q8WXH0 6885 aaKnown RBP1.29□□□□□ -2.2
HERC1-201ENST00000443617 LCE1BQ5T7P3 118 aa1.28□□□□□ -2.2
HERC1-201ENST00000443617 NEBP20929 6669 aa1.28□□□□□ -2.2
HERC1-201ENST00000443617 KRTAP9-4Q9BYQ2 154 aa1.27□□□□□ -2.21
HERC1-201ENST00000443617 LCE1EQ5T753 118 aa1.25□□□□□ -2.21
HERC1-201ENST00000443617 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.25□□□□□ -2.21
HERC1-201ENST00000443617 OBSCNQ5VST9 7968 aa1.22□□□□□ -2.21
HERC1-201ENST00000443617 LCE1CQ5T751 118 aa1.22□□□□□ -2.21
HERC1-201ENST00000443617 LCE1FQ5T754 118 aa1.22□□□□□ -2.21
HERC1-201ENST00000443617 DSTQ03001 7570 aaKnown RBP1.22□□□□□ -2.21
HERC1-201ENST00000443617 LCE4AQ5TA78 99 aa1.21□□□□□ -2.22
HERC1-201ENST00000443617 KRTAP9-9Q9BYP9 154 aa1.19□□□□□ -2.22
HERC1-201ENST00000443617 HMCN1Q96RW7 5635 aa1.13□□□□□ -2.23
HERC1-201ENST00000443617 AHNAKQ09666 5890 aaKnown RBP1.13□□□□□ -2.23
HERC1-201ENST00000443617 KRTAP4-11Q9BYQ6 195 aa1.11□□□□□ -2.23
HERC1-201ENST00000443617 MUC5BQ9HC84 5762 aaPredicted RBP1.09□□□□□ -2.23
HERC1-201ENST00000443617 KRTAP5-9P26371 169 aa1.05□□□□□ -2.24
HERC1-201ENST00000443617 MUC5ACP98088 5654 aa1.05□□□□□ -2.24
HERC1-201ENST00000443617 KRTAP5-4Q6L8H1 288 aa1.04□□□□□ -2.24
HERC1-201ENST00000443617 KRTAP4-6Q9BYQ5 205 aa1.01□□□□□ -2.25
HERC1-201ENST00000443617 MUC19Q7Z5P9 8384 aa0.97□□□□□ -2.25
HERC1-201ENST00000443617 KRTAP20-2Q3LI61 65 aa0.96□□□□□ -2.26
HERC1-201ENST00000443617 KRTAP5-10Q6L8G5 202 aa0.95□□□□□ -2.26
HERC1-201ENST00000443617 KRTAP4-12Q9BQ66 201 aa0.94□□□□□ -2.26
HERC1-201ENST00000443617 KRTAP4-2Q9BYR5 136 aa0.94□□□□□ -2.26
HERC1-201ENST00000443617 KRTAP4-4Q9BYR3 166 aa0.93□□□□□ -2.26
HERC1-201ENST00000443617 KRTAP5-2Q701N4 177 aa0.92□□□□□ -2.26
HERC1-201ENST00000443617 KRTAP21-1Q3LI58 79 aa0.89□□□□□ -2.27
HERC1-201ENST00000443617 KRTAP5-1Q6L8H4 278 aa0.88□□□□□ -2.27
HERC1-201ENST00000443617 KRTAP21-2Q3LI59 83 aa0.83□□□□□ -2.28
HERC1-201ENST00000443617 PHGR1C9JFL3 82 aa0.83□□□□□ -2.28
HERC1-201ENST00000443617 KRTAP5-3Q6L8H2 238 aa0.82□□□□□ -2.28
HERC1-201ENST00000443617 MUC16Q8WXI7 14507 aa0.79□□□□□ -2.28
HERC1-201ENST00000443617 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.77□□□□□ -2.29
HERC1-201ENST00000443617 KRTAP5-8O75690 187 aa0.73□□□□□ -2.29
HERC1-201ENST00000443617 KRTAP5-11Q6L8G4 156 aa0.71□□□□□ -2.3
HERC1-201ENST00000443617 KRTAP5-7Q6L8G8 165 aa0.67□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 46.1 ms