RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 HERC1Q15751 4861 aa2.06□□□□□ -2.08
MCF2-205ENST00000437564 J3QKU1 62 aa2.04□□□□□ -2.08
MCF2-205ENST00000437564 KRTAP19-2Q3LHN2 52 aa2.03□□□□□ -2.08
MCF2-205ENST00000437564 PRM1P04553 51 aa2.01□□□□□ -2.09
MCF2-205ENST00000437564 LCE3DQ9BYE3 92 aa2□□□□□ -2.09
MCF2-205ENST00000437564 MT1XP80297 61 aa1.94□□□□□ -2.1
MCF2-205ENST00000437564 KRTAP19-8Q3LI54 63 aa1.94□□□□□ -2.1
MCF2-205ENST00000437564 MT1AP04731 61 aa1.93□□□□□ -2.1
MCF2-205ENST00000437564 LRP2P98164 4655 aa1.91□□□□□ -2.1
MCF2-205ENST00000437564 MT1HL1P0DM35 61 aa1.9□□□□□ -2.1
MCF2-205ENST00000437564 KRTAP5-5Q701N2 237 aaPredicted RBP1.9□□□□□ -2.1
MCF2-205ENST00000437564 KRTAP4-1Q9BYQ7 146 aa1.89□□□□□ -2.11
MCF2-205ENST00000437564 DNHD1Q96M86 4753 aa1.88□□□□□ -2.11
MCF2-205ENST00000437564 MT1EP04732 61 aa1.85□□□□□ -2.11
MCF2-205ENST00000437564 MT1LQ93083 61 aa1.81□□□□□ -2.12
MCF2-205ENST00000437564 KMT2CQ8NEZ4 4911 aaKnown RBP1.8□□□□□ -2.12
MCF2-205ENST00000437564 MUC2Q02817 5179 aa1.8□□□□□ -2.12
MCF2-205ENST00000437564 MT1BP07438 61 aa1.79□□□□□ -2.12
MCF2-205ENST00000437564 KRTAP21-3Q3LHN1 58 aa1.79□□□□□ -2.12
MCF2-205ENST00000437564 HYDINQ4G0P3 5121 aa1.76□□□□□ -2.13
MCF2-205ENST00000437564 KRTAP6-2Q3LI66 62 aa1.74□□□□□ -2.13
MCF2-205ENST00000437564 HMCN2Q8NDA2 5059 aa1.73□□□□□ -2.13
MCF2-205ENST00000437564 LCE1CQ5T751 118 aa1.72□□□□□ -2.13
MCF2-205ENST00000437564 LCE1BQ5T7P3 118 aa1.72□□□□□ -2.13
MCF2-205ENST00000437564 KRTAP19-7Q3SYF9 63 aa1.72□□□□□ -2.13
MCF2-205ENST00000437564 SPRR2FQ96RM1 72 aa1.71□□□□□ -2.14
MCF2-205ENST00000437564 MT2AP02795 61 aa1.68□□□□□ -2.14
MCF2-205ENST00000437564 SPRR2AP35326 72 aa1.68□□□□□ -2.14
MCF2-205ENST00000437564 MT1FP04733 61 aa1.68□□□□□ -2.14
MCF2-205ENST00000437564 SPRR2BP35325 72 aa1.66□□□□□ -2.14
MCF2-205ENST00000437564 SYNE1Q8NF91 8797 aaKnown RBP1.66□□□□□ -2.14
MCF2-205ENST00000437564 SPRR2DP22532 72 aa1.65□□□□□ -2.14
MCF2-205ENST00000437564 RYR3Q15413 4870 aa1.65□□□□□ -2.15
MCF2-205ENST00000437564 RYR1P21817 5038 aa1.64□□□□□ -2.15
MCF2-205ENST00000437564 RYR2Q92736 4967 aa1.63□□□□□ -2.15
MCF2-205ENST00000437564 MT1HP80294 61 aa1.62□□□□□ -2.15
MCF2-205ENST00000437564 HERC2O95714 4834 aa1.62□□□□□ -2.15
MCF2-205ENST00000437564 MT1GP13640 62 aa1.61□□□□□ -2.15
MCF2-205ENST00000437564 UBR4Q5T4S7 5183 aa1.59□□□□□ -2.15
MCF2-205ENST00000437564 SPRR2EP22531 72 aa1.59□□□□□ -2.16
MCF2-205ENST00000437564 MUC5BQ9HC84 5762 aaPredicted RBP1.57□□□□□ -2.16
MCF2-205ENST00000437564 PCLOQ9Y6V0 5065 aa1.54□□□□□ -2.16
MCF2-205ENST00000437564 BIRC6Q9NR09 4857 aa1.53□□□□□ -2.17
MCF2-205ENST00000437564 KRTAP19-3Q7Z4W3 81 aa1.51□□□□□ -2.17
MCF2-205ENST00000437564 MT1MQ8N339 61 aa1.5□□□□□ -2.17
MCF2-205ENST00000437564 CRCT1Q9UGL9 99 aa1.5□□□□□ -2.17
MCF2-205ENST00000437564 ABCA13Q86UQ4 5058 aa1.45□□□□□ -2.18
MCF2-205ENST00000437564 KRTAP6-1Q3LI64 71 aa1.45□□□□□ -2.18
MCF2-205ENST00000437564 RNF213Q63HN8 5207 aa1.42□□□□□ -2.18
MCF2-205ENST00000437564 KRTAP21-1Q3LI58 79 aa1.41□□□□□ -2.18
MCF2-205ENST00000437564 MUC19Q7Z5P9 8384 aa1.41□□□□□ -2.18
MCF2-205ENST00000437564 KIAA1109Q2LD37 5005 aa1.41□□□□□ -2.18
MCF2-205ENST00000437564 USH2AO75445 5202 aa1.4□□□□□ -2.18
MCF2-205ENST00000437564 EPPK1P58107 5090 aaKnown RBP1.37□□□□□ -2.19
MCF2-205ENST00000437564 KRTAP5-7Q6L8G8 165 aa1.34□□□□□ -2.2
MCF2-205ENST00000437564 KMT2DO14686 5537 aa1.32□□□□□ -2.2
MCF2-205ENST00000437564 FAT4Q6V0I7 4981 aa1.32□□□□□ -2.2
MCF2-205ENST00000437564 SSPOA2VEC9 5147 aa1.29□□□□□ -2.2
MCF2-205ENST00000437564 KRTAP21-2Q3LI59 83 aa1.25□□□□□ -2.21
MCF2-205ENST00000437564 KRTAP5-10Q6L8G5 202 aa1.25□□□□□ -2.21
MCF2-205ENST00000437564 AHNAKQ09666 5890 aaKnown RBP1.23□□□□□ -2.21
MCF2-205ENST00000437564 MDN1Q9NU22 5596 aa1.2□□□□□ -2.22
MCF2-205ENST00000437564 AHNAK2Q8IVF2 5795 aa1.2□□□□□ -2.22
MCF2-205ENST00000437564 FCGBPQ9Y6R7 5405 aaPredicted RBP1.15□□□□□ -2.23
MCF2-205ENST00000437564 GPR98Q8WXG9 6306 aa1.13□□□□□ -2.23
MCF2-205ENST00000437564 MUC5ACP98088 5654 aa1.1□□□□□ -2.23
MCF2-205ENST00000437564 KRTAP19-6Q3LI70 58 aa1.09□□□□□ -2.23
MCF2-205ENST00000437564 MUC12Q9UKN1 5478 aa0.98□□□□□ -2.25
MCF2-205ENST00000437564 DSTQ03001 7570 aaKnown RBP0.98□□□□□ -2.25
MCF2-205ENST00000437564 NEBP20929 6669 aa0.78□□□□□ -2.28
MCF2-205ENST00000437564 KRTAP20-1Q3LI63 56 aa0.77□□□□□ -2.29
MCF2-205ENST00000437564 SYNE2Q8WXH0 6885 aaKnown RBP0.77□□□□□ -2.29
MCF2-205ENST00000437564 FSIP2Q5CZC0 6907 aa0.75□□□□□ -2.29
MCF2-205ENST00000437564 KRTAP20-2Q3LI61 65 aa0.74□□□□□ -2.29
MCF2-205ENST00000437564 MACF1Q9UPN3 7388 aaKnown RBP0.71□□□□□ -2.3
MCF2-205ENST00000437564 MUC16Q8WXI7 14507 aa0.66□□□□□ -2.3
MCF2-205ENST00000437564 MT4P47944 62 aa0.6□□□□□ -2.31
MCF2-205ENST00000437564 PHGR1C9JFL3 82 aa0.59□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 55.1 ms