RNA–Protein interactions for RNA: ENST00000435891.5

CLSTN1-203, Transcript of calsyntenin 1, humanhuman

TSL 2

Gene CLSTN1, Length 3,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-203ENST00000435891 KRTAP2-3P0C7H8 128 aa3.5□□□□□ -1.85
CLSTN1-203ENST00000435891 KRTAP2-4Q9BYR9 128 aa3.5□□□□□ -1.85
CLSTN1-203ENST00000435891 KRTAP2-1Q9BYU5 128 aa3.5□□□□□ -1.85
CLSTN1-203ENST00000435891 KRTAP4-3Q9BYR4 195 aa3.49□□□□□ -1.85
CLSTN1-203ENST00000435891 LOC100996750A0A140TA64 210 aa3.47□□□□□ -1.85
CLSTN1-203ENST00000435891 KRTAP19-4Q3LI73 84 aa3.44□□□□□ -1.86
CLSTN1-203ENST00000435891 DSTQ03001 7570 aaKnown RBP3.43□□□□□ -1.86
CLSTN1-203ENST00000435891 CRCT1Q9UGL9 99 aa3.42□□□□□ -1.86
CLSTN1-203ENST00000435891 MT1GP13640 62 aa3.4□□□□□ -1.87
CLSTN1-203ENST00000435891 KRTAP12-4P60329 112 aa3.39□□□□□ -1.87
CLSTN1-203ENST00000435891 MT1MQ8N339 61 aa3.38□□□□□ -1.87
CLSTN1-203ENST00000435891 KRTAP19-3Q7Z4W3 81 aa3.37□□□□□ -1.87
CLSTN1-203ENST00000435891 KRTAP4-6Q9BYQ5 205 aa3.37□□□□□ -1.87
CLSTN1-203ENST00000435891 OBSCNQ5VST9 7968 aa3.33□□□□□ -1.88
CLSTN1-203ENST00000435891 MACF1Q9UPN3 7388 aaKnown RBP3.32□□□□□ -1.88
CLSTN1-203ENST00000435891 KRTAP9-2Q9BYQ4 174 aa3.31□□□□□ -1.88
CLSTN1-203ENST00000435891 SPRR2FQ96RM1 72 aa3.28□□□□□ -1.88
CLSTN1-203ENST00000435891 SYNE1Q8NF91 8797 aaKnown RBP3.27□□□□□ -1.89
CLSTN1-203ENST00000435891 LCE5AQ5TCM9 118 aa3.26□□□□□ -1.89
CLSTN1-203ENST00000435891 MDN1Q9NU22 5596 aa3.22□□□□□ -1.89
CLSTN1-203ENST00000435891 SYNE2Q8WXH0 6885 aaKnown RBP3.21□□□□□ -1.89
CLSTN1-203ENST00000435891 KRTAP9-6A0A140TA67 174 aa3.14□□□□□ -1.91
CLSTN1-203ENST00000435891 LCE3BQ5TA77 95 aa3.13□□□□□ -1.91
CLSTN1-203ENST00000435891 KRTAP4-9Q9BYQ8 210 aa3.12□□□□□ -1.91
CLSTN1-203ENST00000435891 KRTAP6-1Q3LI64 71 aa3.09□□□□□ -1.91
CLSTN1-203ENST00000435891 LCE1AQ5T7P2 110 aa3.06□□□□□ -1.92
CLSTN1-203ENST00000435891 PRM1P04553 51 aa3.06□□□□□ -1.92
CLSTN1-203ENST00000435891 KRTAP5-9P26371 169 aa3.02□□□□□ -1.93
CLSTN1-203ENST00000435891 KRTAP9-7A8MTY7 169 aa3.01□□□□□ -1.93
CLSTN1-203ENST00000435891 MT1AP04731 61 aa3□□□□□ -1.93
CLSTN1-203ENST00000435891 KRTAP5-5Q701N2 237 aaPredicted RBP2.99□□□□□ -1.93
CLSTN1-203ENST00000435891 SPRR2EP22531 72 aa2.97□□□□□ -1.93
CLSTN1-203ENST00000435891 SPRR2BP35325 72 aa2.97□□□□□ -1.93
CLSTN1-203ENST00000435891 SPRR2AP35326 72 aa2.97□□□□□ -1.93
CLSTN1-203ENST00000435891 KRTAP4-12Q9BQ66 201 aa2.96□□□□□ -1.94
CLSTN1-203ENST00000435891 LCE3DQ9BYE3 92 aa2.94□□□□□ -1.94
CLSTN1-203ENST00000435891 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.93□□□□□ -1.94
CLSTN1-203ENST00000435891 LCE3EQ5T5B0 92 aa2.92□□□□□ -1.94
CLSTN1-203ENST00000435891 KRTAP6-3Q3LI67 103 aa2.87□□□□□ -1.95
CLSTN1-203ENST00000435891 SPRR2DP22532 72 aa2.85□□□□□ -1.95
CLSTN1-203ENST00000435891 KRTAP9-4Q9BYQ2 154 aa2.83□□□□□ -1.96
CLSTN1-203ENST00000435891 KRTAP9-9Q9BYP9 154 aa2.82□□□□□ -1.96
CLSTN1-203ENST00000435891 LCE1EQ5T753 118 aa2.78□□□□□ -1.96
CLSTN1-203ENST00000435891 KRTAP6-2Q3LI66 62 aa2.77□□□□□ -1.97
CLSTN1-203ENST00000435891 LCE1DQ5T752 114 aa2.77□□□□□ -1.97
CLSTN1-203ENST00000435891 KRTAP2-2Q9BYT5 123 aa2.76□□□□□ -1.97
CLSTN1-203ENST00000435891 MUC19Q7Z5P9 8384 aa2.72□□□□□ -1.97
CLSTN1-203ENST00000435891 MT3P25713 68 aa2.68□□□□□ -1.98
CLSTN1-203ENST00000435891 KRTAP5-4Q6L8H1 288 aa2.61□□□□□ -1.99
CLSTN1-203ENST00000435891 NEBP20929 6669 aa2.59□□□□□ -1.99
CLSTN1-203ENST00000435891 KRTAP20-1Q3LI63 56 aa2.59□□□□□ -1.99
CLSTN1-203ENST00000435891 KRTAP4-2Q9BYR5 136 aa2.59□□□□□ -2
CLSTN1-203ENST00000435891 MT4P47944 62 aa2.58□□□□□ -2
CLSTN1-203ENST00000435891 KRTAP4-11Q9BYQ6 195 aa2.57□□□□□ -2
CLSTN1-203ENST00000435891 LCE4AQ5TA78 99 aa2.48□□□□□ -2.01
CLSTN1-203ENST00000435891 HMCN1Q96RW7 5635 aa2.48□□□□□ -2.01
CLSTN1-203ENST00000435891 KRTAP20-2Q3LI61 65 aa2.47□□□□□ -2.01
CLSTN1-203ENST00000435891 LCE1FQ5T754 118 aa2.46□□□□□ -2.02
CLSTN1-203ENST00000435891 KRTAP5-2Q701N4 177 aa2.44□□□□□ -2.02
CLSTN1-203ENST00000435891 GPR98Q8WXG9 6306 aa2.36□□□□□ -2.03
CLSTN1-203ENST00000435891 KRTAP5-3Q6L8H2 238 aa2.36□□□□□ -2.03
CLSTN1-203ENST00000435891 MUC5ACP98088 5654 aa2.35□□□□□ -2.03
CLSTN1-203ENST00000435891 LCE1BQ5T7P3 118 aa2.26□□□□□ -2.05
CLSTN1-203ENST00000435891 KRTAP5-10Q6L8G5 202 aa2.15□□□□□ -2.07
CLSTN1-203ENST00000435891 KRTAP5-1Q6L8H4 278 aa2.11□□□□□ -2.07
CLSTN1-203ENST00000435891 LCE1CQ5T751 118 aa2.07□□□□□ -2.08
CLSTN1-203ENST00000435891 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
CLSTN1-203ENST00000435891 KRTAP5-8O75690 187 aa1.97□□□□□ -2.09
CLSTN1-203ENST00000435891 AHNAK2Q8IVF2 5795 aa1.95□□□□□ -2.1
CLSTN1-203ENST00000435891 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.95□□□□□ -2.1
CLSTN1-203ENST00000435891 KRTAP5-7Q6L8G8 165 aa1.89□□□□□ -2.11
CLSTN1-203ENST00000435891 KRTAP4-4Q9BYR3 166 aa1.87□□□□□ -2.11
CLSTN1-203ENST00000435891 MUC5BQ9HC84 5762 aaPredicted RBP1.86□□□□□ -2.11
CLSTN1-203ENST00000435891 KRTAP5-11Q6L8G4 156 aa1.78□□□□□ -2.12
CLSTN1-203ENST00000435891 KRTAP21-1Q3LI58 79 aa1.77□□□□□ -2.13
CLSTN1-203ENST00000435891 AHNAKQ09666 5890 aaKnown RBP1.69□□□□□ -2.14
CLSTN1-203ENST00000435891 PHGR1C9JFL3 82 aa1.55□□□□□ -2.16
CLSTN1-203ENST00000435891 MUC16Q8WXI7 14507 aa1.04□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 89.1 ms