RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 MT1HL1P0DM35 61 aa1.67□□□□□ -2.14
USP54-206ENST00000433394 WFDC13Q8IUB5 93 aa1.65□□□□□ -2.15
USP54-206ENST00000433394 ABCA13Q86UQ4 5058 aa1.62□□□□□ -2.15
USP54-206ENST00000433394 C9orf92A6NGG3 77 aa1.6□□□□□ -2.15
USP54-206ENST00000433394 H0YAA0 97 aa1.6□□□□□ -2.15
USP54-206ENST00000433394 KRTAP4-1Q9BYQ7 146 aa1.6□□□□□ -2.15
USP54-206ENST00000433394 PCLOQ9Y6V0 5065 aa1.58□□□□□ -2.16
USP54-206ENST00000433394 H1FX-AS1Q4G0G2 97 aa1.58□□□□□ -2.16
USP54-206ENST00000433394 HERC1Q15751 4861 aa1.58□□□□□ -2.16
USP54-206ENST00000433394 LRP2P98164 4655 aa1.57□□□□□ -2.16
USP54-206ENST00000433394 C10orf95Q9H7T3 257 aa1.57□□□□□ -2.16
USP54-206ENST00000433394 HMCN2Q8NDA2 5059 aa1.55□□□□□ -2.16
USP54-206ENST00000433394 MUC17Q685J3 4493 aa1.52□□□□□ -2.17
USP54-206ENST00000433394 LPAP08519 4548 aa1.51□□□□□ -2.17
USP54-206ENST00000433394 FLGP20930 4061 aaPredicted RBP1.5□□□□□ -2.17
USP54-206ENST00000433394 S4R3F8 94 aa1.5□□□□□ -2.17
USP54-206ENST00000433394 FCGBPQ9Y6R7 5405 aaPredicted RBP1.47□□□□□ -2.17
USP54-206ENST00000433394 MUC2Q02817 5179 aa1.45□□□□□ -2.18
USP54-206ENST00000433394 M0QZ58 72 aa1.45□□□□□ -2.18
USP54-206ENST00000433394 KRTAP19-2Q3LHN2 52 aa1.45□□□□□ -2.18
USP54-206ENST00000433394 UBR4Q5T4S7 5183 aa1.45□□□□□ -2.18
USP54-206ENST00000433394 RNF213Q63HN8 5207 aa1.42□□□□□ -2.18
USP54-206ENST00000433394 FAT4Q6V0I7 4981 aa1.42□□□□□ -2.18
USP54-206ENST00000433394 M0R2T5 61 aa1.42□□□□□ -2.18
USP54-206ENST00000433394 MT1HP80294 61 aa1.41□□□□□ -2.18
USP54-206ENST00000433394 A0A0D9SG42 100 aa1.38□□□□□ -2.19
USP54-206ENST00000433394 SPRR2GQ9BYE4 73 aa1.37□□□□□ -2.19
USP54-206ENST00000433394 MT2AP02795 61 aa1.34□□□□□ -2.19
USP54-206ENST00000433394 HMCN1Q96RW7 5635 aa1.34□□□□□ -2.2
USP54-206ENST00000433394 MT1FP04733 61 aa1.32□□□□□ -2.2
USP54-206ENST00000433394 KRTAP19-8Q3LI54 63 aa1.32□□□□□ -2.2
USP54-206ENST00000433394 MT1BP07438 61 aa1.26□□□□□ -2.21
USP54-206ENST00000433394 TNP1P09430 55 aa1.26□□□□□ -2.21
USP54-206ENST00000433394 KRTAP19-6Q3LI70 58 aa1.23□□□□□ -2.21
USP54-206ENST00000433394 MT1XP80297 61 aa1.22□□□□□ -2.21
USP54-206ENST00000433394 FSIP2Q5CZC0 6907 aa1.2□□□□□ -2.22
USP54-206ENST00000433394 USH2AO75445 5202 aa1.2□□□□□ -2.22
USP54-206ENST00000433394 SSPOA2VEC9 5147 aa1.2□□□□□ -2.22
USP54-206ENST00000433394 KRTAP8-1Q8IUC2 63 aa1.17□□□□□ -2.22
USP54-206ENST00000433394 KRTAP19-3Q7Z4W3 81 aa1.15□□□□□ -2.23
USP54-206ENST00000433394 MACF1Q9UPN3 7388 aaKnown RBP1.14□□□□□ -2.23
USP54-206ENST00000433394 SYNE2Q8WXH0 6885 aaKnown RBP1.09□□□□□ -2.23
USP54-206ENST00000433394 KRTAP19-5Q3LI72 72 aa1.09□□□□□ -2.23
USP54-206ENST00000433394 MT1EP04732 61 aa1.08□□□□□ -2.24
USP54-206ENST00000433394 MT1GP13640 62 aa1.08□□□□□ -2.24
USP54-206ENST00000433394 KRTAP19-7Q3SYF9 63 aa1.08□□□□□ -2.24
USP54-206ENST00000433394 MT1LQ93083 61 aa1.06□□□□□ -2.24
USP54-206ENST00000433394 SPRR2FQ96RM1 72 aa1.06□□□□□ -2.24
USP54-206ENST00000433394 KMT2DO14686 5537 aa1.06□□□□□ -2.24
USP54-206ENST00000433394 NEBP20929 6669 aa1.04□□□□□ -2.24
USP54-206ENST00000433394 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
USP54-206ENST00000433394 KRTAP5-10Q6L8G5 202 aa1.03□□□□□ -2.24
USP54-206ENST00000433394 MUC12Q9UKN1 5478 aa1.02□□□□□ -2.25
USP54-206ENST00000433394 MDN1Q9NU22 5596 aa1.02□□□□□ -2.25
USP54-206ENST00000433394 SPRR2EP22531 72 aa1.01□□□□□ -2.25
USP54-206ENST00000433394 SPRR2BP35325 72 aa1.01□□□□□ -2.25
USP54-206ENST00000433394 SPRR2AP35326 72 aa1.01□□□□□ -2.25
USP54-206ENST00000433394 MT1MQ8N339 61 aa1.01□□□□□ -2.25
USP54-206ENST00000433394 KRTAP2-3P0C7H8 128 aa1□□□□□ -2.25
USP54-206ENST00000433394 KRTAP2-4Q9BYR9 128 aa1□□□□□ -2.25
USP54-206ENST00000433394 KRTAP2-1Q9BYU5 128 aa1□□□□□ -2.25
USP54-206ENST00000433394 SPRR2DP22532 72 aa0.98□□□□□ -2.25
USP54-206ENST00000433394 DSTQ03001 7570 aaKnown RBP0.97□□□□□ -2.25
USP54-206ENST00000433394 PRM1P04553 51 aa0.94□□□□□ -2.26
USP54-206ENST00000433394 KRTAP20-1Q3LI63 56 aa0.92□□□□□ -2.26
USP54-206ENST00000433394 MT1AP04731 61 aa0.91□□□□□ -2.26
USP54-206ENST00000433394 KRTAP6-1Q3LI64 71 aa0.86□□□□□ -2.27
USP54-206ENST00000433394 SYNE1Q8NF91 8797 aaKnown RBP0.85□□□□□ -2.27
USP54-206ENST00000433394 KRTAP20-2Q3LI61 65 aa0.83□□□□□ -2.28
USP54-206ENST00000433394 KRTAP21-1Q3LI58 79 aa0.82□□□□□ -2.28
USP54-206ENST00000433394 MT4P47944 62 aa0.81□□□□□ -2.28
USP54-206ENST00000433394 KRTAP6-2Q3LI66 62 aa0.81□□□□□ -2.28
USP54-206ENST00000433394 AHNAK2Q8IVF2 5795 aa0.78□□□□□ -2.28
USP54-206ENST00000433394 GPR98Q8WXG9 6306 aa0.75□□□□□ -2.29
USP54-206ENST00000433394 MUC5ACP98088 5654 aa0.7□□□□□ -2.3
USP54-206ENST00000433394 MUC5BQ9HC84 5762 aaPredicted RBP0.65□□□□□ -2.31
USP54-206ENST00000433394 AHNAKQ09666 5890 aaKnown RBP0.63□□□□□ -2.31
USP54-206ENST00000433394 PHGR1C9JFL3 82 aa0.61□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 117.1 ms