RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 AEBP2Q6ZN18 517 aaPredicted RBP24.95■■□□□ 1.58
USP54-206ENST00000433394 CHIC1Q5VXU3 224 aa24.35■■□□□ 1.49
USP54-206ENST00000433394 PHF23Q9BUL5 403 aaPredicted RBP21.33■■□□□ 1.01
USP54-206ENST00000433394 SENP3Q9H4L4 574 aaPredicted RBP21.27■■□□□ 1
USP54-206ENST00000433394 PLPPR3Q6T4P5 718 aa20.17■□□□□ 0.82
USP54-206ENST00000433394 FOXD1Q16676 465 aa19.85■□□□□ 0.77
USP54-206ENST00000433394 ADRA2BP18089 450 aa18.72■□□□□ 0.59
USP54-206ENST00000433394 PPP6R1Q9UPN7 881 aa18.62■□□□□ 0.57
USP54-206ENST00000433394 MSH5O43196 834 aa18.58■□□□□ 0.56
USP54-206ENST00000433394 PIAS4Q8N2W9 510 aaPredicted RBP18.53■□□□□ 0.56
USP54-206ENST00000433394 POTEDQ86YR6 584 aa18.26■□□□□ 0.51
USP54-206ENST00000433394 KCNA4P22459 653 aa17.99■□□□□ 0.47
USP54-206ENST00000433394 PPP4R3CPQ6ZMV5 832 aa17.77■□□□□ 0.44
USP54-206ENST00000433394 NCBP3Q53F19 620 aaKnown RBP17.67■□□□□ 0.42
USP54-206ENST00000433394 EHMT2Q96KQ7 1210 aa17.56■□□□□ 0.4
USP54-206ENST00000433394 SCAF1Q9H7N4 1312 aaKnown RBP17.41■□□□□ 0.38
USP54-206ENST00000433394 SLC4A1APQ9BWU0 796 aaKnown RBP17.37■□□□□ 0.37
USP54-206ENST00000433394 CNKSR2Q8WXI2 1034 aa17.2■□□□□ 0.34
USP54-206ENST00000433394 NPM3O75607 178 aaKnown RBP17.18■□□□□ 0.34
USP54-206ENST00000433394 MAPK8IP2Q13387 824 aaPredicted RBP17■□□□□ 0.31
USP54-206ENST00000433394 CSRNP3Q8WYN3 585 aa16.95■□□□□ 0.3
USP54-206ENST00000433394 DMRT2Q9Y5R5 561 aa16.86■□□□□ 0.29
USP54-206ENST00000433394 RNF216Q9NWF9 866 aaPredicted RBP16.69■□□□□ 0.26
USP54-206ENST00000433394 DNAJC5BQ9UF47 199 aa16.6■□□□□ 0.25
USP54-206ENST00000433394 FOXD4L1Q9NU39 408 aa16.49■□□□□ 0.23
USP54-206ENST00000433394 ZBTB22O15209 634 aa16.45■□□□□ 0.22
USP54-206ENST00000433394 HOXD11P31277 338 aaPredicted RBP16.39■□□□□ 0.21
USP54-206ENST00000433394 DCAF8L1A6NGE4 600 aa16.2■□□□□ 0.18
USP54-206ENST00000433394 CACNB1Q02641 598 aaPredicted RBP16.01■□□□□ 0.15
USP54-206ENST00000433394 MYCNP04198 464 aaPredicted RBP15.99■□□□□ 0.15
USP54-206ENST00000433394 SLC4A2P04920 1241 aa15.99■□□□□ 0.15
USP54-206ENST00000433394 ATXN8OSP0DMR3 200 aa15.91■□□□□ 0.14
USP54-206ENST00000433394 RNF39Q9H2S5 420 aa15.86■□□□□ 0.13
USP54-206ENST00000433394 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.77■□□□□ 0.12
USP54-206ENST00000433394 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.7■□□□□ 0.1
USP54-206ENST00000433394 HNRNPUL2Q1KMD3 747 aaKnown RBP15.7■□□□□ 0.1
USP54-206ENST00000433394 C1QBPQ07021 282 aaKnown RBP15.62■□□□□ 0.09
USP54-206ENST00000433394 SAMD1Q6SPF0 538 aaPredicted RBP15.6■□□□□ 0.09
USP54-206ENST00000433394 APLP2Q06481 763 aa15.46■□□□□ 0.07
USP54-206ENST00000433394 FKBP8Q14318 412 aa15.42■□□□□ 0.06
USP54-206ENST00000433394 U3KPZ7 1027 aaPredicted RBP15.41■□□□□ 0.06
USP54-206ENST00000433394 ATF5Q9Y2D1 282 aaPredicted RBP15.29■□□□□ 0.04
USP54-206ENST00000433394 AMER1Q5JTC6 1135 aaPredicted RBP15.23■□□□□ 0.03
USP54-206ENST00000433394 ZNF219Q9P2Y4 722 aaPredicted RBP15.15■□□□□ 0.02
USP54-206ENST00000433394 RTN4Q9NQC3 1192 aaKnown RBP15.02■□□□□ -0
USP54-206ENST00000433394 SPINK5Q9NQ38 1064 aaPredicted RBP14.94□□□□□ -0.02
USP54-206ENST00000433394 FBLN2P98095 1184 aa14.93□□□□□ -0.02
USP54-206ENST00000433394 TRHP20396 242 aaPredicted RBP14.92□□□□□ -0.02
USP54-206ENST00000433394 CAPN15O75808 1086 aa14.91□□□□□ -0.02
USP54-206ENST00000433394 FBXO3Q9UK99 471 aa14.85□□□□□ -0.03
USP54-206ENST00000433394 DSG3P32926 999 aa14.84□□□□□ -0.03
USP54-206ENST00000433394 SPDYE4A6NLX3 237 aa14.83□□□□□ -0.04
USP54-206ENST00000433394 POLA2Q14181 598 aa14.77□□□□□ -0.05
USP54-206ENST00000433394 ZBTB12Q9Y330 459 aaPredicted RBP14.75□□□□□ -0.05
USP54-206ENST00000433394 SLC24A1O60721 1099 aa14.71□□□□□ -0.05
USP54-206ENST00000433394 MKRN4PQ13434 485 aaPredicted RBP14.67□□□□□ -0.06
USP54-206ENST00000433394 ABCB7O75027 752 aa14.57□□□□□ -0.08
USP54-206ENST00000433394 PROM2Q8N271 834 aa14.53□□□□□ -0.08
USP54-206ENST00000433394 VASPP50552 380 aaPredicted RBP14.48□□□□□ -0.09
USP54-206ENST00000433394 ZNF692Q9BU19 519 aaPredicted RBP14.35□□□□□ -0.11
USP54-206ENST00000433394 SPDYE2BA6NHP3 402 aa14.3□□□□□ -0.12
USP54-206ENST00000433394 SPDYE6P0CI01 402 aa14.3□□□□□ -0.12
USP54-206ENST00000433394 SPDYE2Q495Y8 402 aa14.3□□□□□ -0.12
USP54-206ENST00000433394 POTEHQ6S545 545 aa14.3□□□□□ -0.12
USP54-206ENST00000433394 STAG3Q9UJ98 1225 aa14.26□□□□□ -0.13
USP54-206ENST00000433394 IFNLR1Q8IU57 520 aaPredicted RBP14.24□□□□□ -0.13
USP54-206ENST00000433394 KLHL34Q8N239 644 aa14.23□□□□□ -0.13
USP54-206ENST00000433394 OSCARQ8IYS5 282 aa14.22□□□□□ -0.13
USP54-206ENST00000433394 DCAF8L2P0C7V8 631 aa14.2□□□□□ -0.14
USP54-206ENST00000433394 PLCD3Q8N3E9 789 aa14.15□□□□□ -0.14
USP54-206ENST00000433394 RBM42Q9BTD8 480 aaKnown RBP14.14□□□□□ -0.15
USP54-206ENST00000433394 SSUH2Q9Y2M2 353 aa14.14□□□□□ -0.15
USP54-206ENST00000433394 PLEKHG5O94827 1062 aa14.13□□□□□ -0.15
USP54-206ENST00000433394 PABPN1Q86U42 306 aaKnown RBP eCLIP14.13□□□□□ -0.15
USP54-206ENST00000433394 SPOCK2Q92563 424 aa14.12□□□□□ -0.15
USP54-206ENST00000433394 MIER1Q8N108 512 aa14.05□□□□□ -0.16
USP54-206ENST00000433394 ZBTB47Q9UFB7 747 aaPredicted RBP14.03□□□□□ -0.16
USP54-206ENST00000433394 PKD2Q13563 968 aa13.98□□□□□ -0.17
USP54-206ENST00000433394 PLCB2Q00722 1185 aa13.97□□□□□ -0.17
USP54-206ENST00000433394 ECM2O94769 699 aaPredicted RBP13.95□□□□□ -0.18
USP54-206ENST00000433394 CHRDL2Q6WN34 429 aa13.87□□□□□ -0.19
USP54-206ENST00000433394 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.87□□□□□ -0.19
USP54-206ENST00000433394 HAP1P54257 671 aaPredicted RBP13.85□□□□□ -0.19
USP54-206ENST00000433394 CIZ1Q9ULV3 898 aaPredicted RBP13.82□□□□□ -0.2
USP54-206ENST00000433394 AKT1S1Q96B36 256 aa13.81□□□□□ -0.2
USP54-206ENST00000433394 SPDYE1Q8NFV5 336 aaPredicted RBP13.77□□□□□ -0.21
USP54-206ENST00000433394 TRIM41Q8WV44 630 aa13.77□□□□□ -0.21
USP54-206ENST00000433394 BBXQ8WY36 941 aaPredicted RBP13.76□□□□□ -0.21
USP54-206ENST00000433394 REM2Q8IYK8 340 aaPredicted RBP13.7□□□□□ -0.22
USP54-206ENST00000433394 GSE1Q14687 1217 aa13.68□□□□□ -0.22
USP54-206ENST00000433394 RGL2O15211 777 aa13.66□□□□□ -0.22
USP54-206ENST00000433394 CLEC11AQ9Y240 323 aa13.66□□□□□ -0.22
USP54-206ENST00000433394 PRR29P0C7W0 189 aa13.64□□□□□ -0.23
USP54-206ENST00000433394 VSIG10Q8N0Z9 540 aa13.63□□□□□ -0.23
USP54-206ENST00000433394 TAOK2Q9UL54 1235 aa13.63□□□□□ -0.23
USP54-206ENST00000433394 PAXIP1Q6ZW49 1069 aaPredicted RBP13.62□□□□□ -0.23
USP54-206ENST00000433394 CFAP44Q96MT7 982 aa13.62□□□□□ -0.23
USP54-206ENST00000433394 CHGAP10645 457 aaKnown RBP13.58□□□□□ -0.24
USP54-206ENST00000433394 SPRYD3Q8NCJ5 442 aa13.57□□□□□ -0.24
USP54-206ENST00000433394 DCAF8Q5TAQ9 597 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms