RNA–Protein interactions for RNA: ENST00000433224.1

LRRTM1-206, Transcript of leucine rich repeat transmembrane neuronal 1, humanhuman

TSL 1 (best)

Gene LRRTM1, Length 4,023 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRTM1-206ENST00000433224 SPRR2AP35326 72 aa4.29□□□□□ -1.72
LRRTM1-206ENST00000433224 KRTAP9-2Q9BYQ4 174 aa4.28□□□□□ -1.72
LRRTM1-206ENST00000433224 KRTAP4-3Q9BYR4 195 aa4.24□□□□□ -1.73
LRRTM1-206ENST00000433224 SYNE2Q8WXH0 6885 aaKnown RBP4.23□□□□□ -1.73
LRRTM1-206ENST00000433224 MT1EP04732 61 aa4.23□□□□□ -1.73
LRRTM1-206ENST00000433224 MT1LQ93083 61 aa4.22□□□□□ -1.73
LRRTM1-206ENST00000433224 KRTAP19-6Q3LI70 58 aa4.21□□□□□ -1.74
LRRTM1-206ENST00000433224 LCE3BQ5TA77 95 aa4.19□□□□□ -1.74
LRRTM1-206ENST00000433224 MUC12Q9UKN1 5478 aa4.19□□□□□ -1.74
LRRTM1-206ENST00000433224 KRTAP19-7Q3SYF9 63 aa4.16□□□□□ -1.74
LRRTM1-206ENST00000433224 LOC100996750A0A140TA64 210 aa4.16□□□□□ -1.74
LRRTM1-206ENST00000433224 SSPOA2VEC9 5147 aa4.15□□□□□ -1.74
LRRTM1-206ENST00000433224 KRTAP19-3Q7Z4W3 81 aa4.15□□□□□ -1.75
LRRTM1-206ENST00000433224 KRTAP12-4P60329 112 aa4.11□□□□□ -1.75
LRRTM1-206ENST00000433224 SPRR2DP22532 72 aa4.11□□□□□ -1.75
LRRTM1-206ENST00000433224 MACF1Q9UPN3 7388 aaKnown RBP4.05□□□□□ -1.76
LRRTM1-206ENST00000433224 MT1MQ8N339 61 aa4.05□□□□□ -1.76
LRRTM1-206ENST00000433224 KRTAP9-6A8MVA2 160 aa4.04□□□□□ -1.76
LRRTM1-206ENST00000433224 LCE2DQ5TA82 110 aaPredicted RBP4.02□□□□□ -1.77
LRRTM1-206ENST00000433224 KRTAP19-4Q3LI73 84 aa4.01□□□□□ -1.77
LRRTM1-206ENST00000433224 KRTAP2-3P0C7H8 128 aa3.9□□□□□ -1.79
LRRTM1-206ENST00000433224 KRTAP2-4Q9BYR9 128 aa3.9□□□□□ -1.79
LRRTM1-206ENST00000433224 KRTAP2-1Q9BYU5 128 aa3.9□□□□□ -1.79
LRRTM1-206ENST00000433224 KRTAP9-6A0A140TA67 174 aa3.88□□□□□ -1.79
LRRTM1-206ENST00000433224 KRTAP4-9Q9BYQ8 210 aa3.81□□□□□ -1.8
LRRTM1-206ENST00000433224 MT4P47944 62 aa3.81□□□□□ -1.8
LRRTM1-206ENST00000433224 LCE3DQ9BYE3 92 aa3.79□□□□□ -1.8
LRRTM1-206ENST00000433224 MDN1Q9NU22 5596 aa3.73□□□□□ -1.81
LRRTM1-206ENST00000433224 LCE3EQ5T5B0 92 aa3.73□□□□□ -1.81
LRRTM1-206ENST00000433224 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.73□□□□□ -1.81
LRRTM1-206ENST00000433224 LCE1AQ5T7P2 110 aa3.72□□□□□ -1.81
LRRTM1-206ENST00000433224 LCE5AQ5TCM9 118 aa3.71□□□□□ -1.82
LRRTM1-206ENST00000433224 KRTAP9-7A8MTY7 169 aa3.69□□□□□ -1.82
LRRTM1-206ENST00000433224 KRTAP6-1Q3LI64 71 aa3.64□□□□□ -1.83
LRRTM1-206ENST00000433224 PRM1P04553 51 aa3.63□□□□□ -1.83
LRRTM1-206ENST00000433224 MT1AP04731 61 aa3.59□□□□□ -1.83
LRRTM1-206ENST00000433224 KRTAP6-3Q3LI67 103 aa3.58□□□□□ -1.84
LRRTM1-206ENST00000433224 MT3P25713 68 aa3.55□□□□□ -1.84
LRRTM1-206ENST00000433224 KRTAP6-2Q3LI66 62 aa3.48□□□□□ -1.85
LRRTM1-206ENST00000433224 LCE1DQ5T752 114 aa3.46□□□□□ -1.86
LRRTM1-206ENST00000433224 LCE1BQ5T7P3 118 aa3.43□□□□□ -1.86
LRRTM1-206ENST00000433224 KRTAP20-1Q3LI63 56 aa3.38□□□□□ -1.87
LRRTM1-206ENST00000433224 NEBP20929 6669 aa3.38□□□□□ -1.87
LRRTM1-206ENST00000433224 KRTAP5-9P26371 169 aa3.38□□□□□ -1.87
LRRTM1-206ENST00000433224 KRTAP9-4Q9BYQ2 154 aa3.34□□□□□ -1.87
LRRTM1-206ENST00000433224 KRTAP2-2Q9BYT5 123 aa3.27□□□□□ -1.89
LRRTM1-206ENST00000433224 KRTAP4-6Q9BYQ5 205 aa3.25□□□□□ -1.89
LRRTM1-206ENST00000433224 MUC19Q7Z5P9 8384 aa3.22□□□□□ -1.89
LRRTM1-206ENST00000433224 LCE4AQ5TA78 99 aa3.16□□□□□ -1.9
LRRTM1-206ENST00000433224 KRTAP5-5Q701N2 237 aaPredicted RBP3.1□□□□□ -1.91
LRRTM1-206ENST00000433224 KRTAP20-2Q3LI61 65 aa3.01□□□□□ -1.93
LRRTM1-206ENST00000433224 MUC5ACP98088 5654 aa3□□□□□ -1.93
LRRTM1-206ENST00000433224 GPR98Q8WXG9 6306 aa2.98□□□□□ -1.93
LRRTM1-206ENST00000433224 HMCN1Q96RW7 5635 aa2.89□□□□□ -1.95
LRRTM1-206ENST00000433224 KRTAP4-11Q9BYQ6 195 aa2.76□□□□□ -1.97
LRRTM1-206ENST00000433224 KRTAP5-4Q6L8H1 288 aa2.71□□□□□ -1.97
LRRTM1-206ENST00000433224 LCE1CQ5T751 118 aa2.7□□□□□ -1.98
LRRTM1-206ENST00000433224 LCE1EQ5T753 118 aa2.7□□□□□ -1.98
LRRTM1-206ENST00000433224 LCE1FQ5T754 118 aa2.7□□□□□ -1.98
LRRTM1-206ENST00000433224 KRTAP4-12Q9BQ66 201 aa2.65□□□□□ -1.98
LRRTM1-206ENST00000433224 KRTAP4-4Q9BYR3 166 aa2.65□□□□□ -1.98
LRRTM1-206ENST00000433224 KRTAP4-2Q9BYR5 136 aa2.65□□□□□ -1.98
LRRTM1-206ENST00000433224 KRTAP9-9Q9BYP9 154 aa2.62□□□□□ -1.99
LRRTM1-206ENST00000433224 AHNAK2Q8IVF2 5795 aa2.59□□□□□ -2
LRRTM1-206ENST00000433224 KRTAP5-3Q6L8H2 238 aa2.55□□□□□ -2
LRRTM1-206ENST00000433224 KRTAP5-2Q701N4 177 aa2.43□□□□□ -2.02
LRRTM1-206ENST00000433224 MUC5BQ9HC84 5762 aaPredicted RBP2.41□□□□□ -2.02
LRRTM1-206ENST00000433224 KRTAP5-8O75690 187 aa2.39□□□□□ -2.03
LRRTM1-206ENST00000433224 KRTAP5-10Q6L8G5 202 aa2.31□□□□□ -2.04
LRRTM1-206ENST00000433224 KRTAP5-1Q6L8H4 278 aa2.22□□□□□ -2.05
LRRTM1-206ENST00000433224 AHNAKQ09666 5890 aaKnown RBP2.2□□□□□ -2.06
LRRTM1-206ENST00000433224 KRTAP5-7Q6L8G8 165 aa2.08□□□□□ -2.08
LRRTM1-206ENST00000433224 KRTAP21-2Q3LI59 83 aa2.04□□□□□ -2.08
LRRTM1-206ENST00000433224 KRTAP5-11Q6L8G4 156 aa1.95□□□□□ -2.1
LRRTM1-206ENST00000433224 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.9□□□□□ -2.1
LRRTM1-206ENST00000433224 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
LRRTM1-206ENST00000433224 PHGR1C9JFL3 82 aa1.77□□□□□ -2.13
LRRTM1-206ENST00000433224 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 49.7 ms