RNA–Protein interactions for RNA: ENST00000427635.6

HERC4-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 6,391 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-206ENST00000427635 KRTAP19-3Q7Z4W3 81 aa1.9□□□□□ -2.11
HERC4-206ENST00000427635 LCE1AQ5T7P2 110 aa1.89□□□□□ -2.11
HERC4-206ENST00000427635 MYCBP2O75592 4640 aa1.89□□□□□ -2.11
HERC4-206ENST00000427635 LCE1BQ5T7P3 118 aa1.88□□□□□ -2.11
HERC4-206ENST00000427635 RNF213Q63HN8 5207 aa1.88□□□□□ -2.11
HERC4-206ENST00000427635 KRTAP2-3P0C7H8 128 aa1.88□□□□□ -2.11
HERC4-206ENST00000427635 KRTAP2-4Q9BYR9 128 aa1.88□□□□□ -2.11
HERC4-206ENST00000427635 LRP1Q07954 4544 aaKnown RBP1.87□□□□□ -2.11
HERC4-206ENST00000427635 LOC100996750A0A140TA64 210 aa1.87□□□□□ -2.11
HERC4-206ENST00000427635 KRTAP4-6Q9BYQ5 205 aa1.87□□□□□ -2.11
HERC4-206ENST00000427635 LCE4AQ5TA78 99 aa1.87□□□□□ -2.11
HERC4-206ENST00000427635 SSPOA2VEC9 5147 aa1.86□□□□□ -2.11
HERC4-206ENST00000427635 MT1BP07438 61 aa1.86□□□□□ -2.11
HERC4-206ENST00000427635 KRTAP6-3Q3LI67 103 aa1.86□□□□□ -2.11
HERC4-206ENST00000427635 LCE1DQ5T752 114 aa1.86□□□□□ -2.11
HERC4-206ENST00000427635 KRTAP9-8Q9BYQ0 159 aa1.85□□□□□ -2.11
HERC4-206ENST00000427635 KRTAP4-8A0A0G2JLE6 195 aa1.85□□□□□ -2.11
HERC4-206ENST00000427635 KRTAP4-8Q9BYQ9 185 aa1.85□□□□□ -2.11
HERC4-206ENST00000427635 KRTAP9-3Q9BYQ3 159 aa1.85□□□□□ -2.11
HERC4-206ENST00000427635 MACF1Q9UPN3 7388 aaKnown RBP1.84□□□□□ -2.11
HERC4-206ENST00000427635 LCE1EQ5T753 118 aa1.84□□□□□ -2.11
HERC4-206ENST00000427635 GPR98Q8WXG9 6306 aa1.82□□□□□ -2.12
HERC4-206ENST00000427635 MT1LQ93083 61 aa1.81□□□□□ -2.12
HERC4-206ENST00000427635 KRTAP19-6Q3LI70 58 aa1.81□□□□□ -2.12
HERC4-206ENST00000427635 KRTAP9-9Q9BYP9 154 aa1.81□□□□□ -2.12
HERC4-206ENST00000427635 MUC2Q02817 5179 aa1.81□□□□□ -2.12
HERC4-206ENST00000427635 LPAP08519 4548 aa1.8□□□□□ -2.12
HERC4-206ENST00000427635 KRTAP2-1Q9BYU5 128 aa1.8□□□□□ -2.12
HERC4-206ENST00000427635 MT1EP04732 61 aa1.77□□□□□ -2.13
HERC4-206ENST00000427635 MT1MQ8N339 61 aa1.76□□□□□ -2.13
HERC4-206ENST00000427635 LCE1CQ5T751 118 aa1.75□□□□□ -2.13
HERC4-206ENST00000427635 NEBP20929 6669 aa1.73□□□□□ -2.13
HERC4-206ENST00000427635 PRM1P04553 51 aa1.72□□□□□ -2.13
HERC4-206ENST00000427635 USH2AO75445 5202 aa1.72□□□□□ -2.13
HERC4-206ENST00000427635 FLGP20930 4061 aaPredicted RBP1.72□□□□□ -2.13
HERC4-206ENST00000427635 KRTAP19-2Q3LHN2 52 aa1.72□□□□□ -2.13
HERC4-206ENST00000427635 KRTAP4-9Q9BYQ8 210 aa1.72□□□□□ -2.13
HERC4-206ENST00000427635 KMT2DO14686 5537 aa1.69□□□□□ -2.14
HERC4-206ENST00000427635 KRTAP4-12Q9BQ66 201 aa1.69□□□□□ -2.14
HERC4-206ENST00000427635 KRTAP4-7Q9BYR0 210 aa1.69□□□□□ -2.14
HERC4-206ENST00000427635 MUC17Q685J3 4493 aa1.67□□□□□ -2.14
HERC4-206ENST00000427635 SYNE1Q8NF91 8797 aaKnown RBP1.66□□□□□ -2.14
HERC4-206ENST00000427635 MT1AP04731 61 aa1.66□□□□□ -2.14
HERC4-206ENST00000427635 DSTQ03001 7570 aaKnown RBP1.63□□□□□ -2.15
HERC4-206ENST00000427635 KRTAP4-3Q9BYR4 195 aa1.62□□□□□ -2.15
HERC4-206ENST00000427635 KRTAP5-2Q701N4 177 aa1.56□□□□□ -2.16
HERC4-206ENST00000427635 MDN1Q9NU22 5596 aa1.56□□□□□ -2.16
HERC4-206ENST00000427635 KRTAP6-2Q3LI66 62 aa1.55□□□□□ -2.16
HERC4-206ENST00000427635 KRTAP4-2Q9BYR5 136 aa1.51□□□□□ -2.17
HERC4-206ENST00000427635 FCGBPQ9Y6R7 5405 aaPredicted RBP1.49□□□□□ -2.17
HERC4-206ENST00000427635 KRTAP6-1Q3LI64 71 aa1.47□□□□□ -2.17
HERC4-206ENST00000427635 OBSCNQ5VST9 7968 aa1.47□□□□□ -2.17
HERC4-206ENST00000427635 MUC12Q9UKN1 5478 aa1.47□□□□□ -2.17
HERC4-206ENST00000427635 KRTAP19-7Q3SYF9 63 aa1.47□□□□□ -2.17
HERC4-206ENST00000427635 KRTAP9-6A8MVA2 160 aa1.46□□□□□ -2.18
HERC4-206ENST00000427635 KRTAP5-9P26371 169 aa1.43□□□□□ -2.18
HERC4-206ENST00000427635 KRTAP20-2Q3LI61 65 aa1.38□□□□□ -2.19
HERC4-206ENST00000427635 MUC5BQ9HC84 5762 aaPredicted RBP1.36□□□□□ -2.19
HERC4-206ENST00000427635 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.36□□□□□ -2.19
HERC4-206ENST00000427635 KRTAP4-11Q9BYQ6 195 aa1.32□□□□□ -2.2
HERC4-206ENST00000427635 AHNAK2Q8IVF2 5795 aa1.31□□□□□ -2.2
HERC4-206ENST00000427635 KRTAP5-3Q6L8H2 238 aa1.3□□□□□ -2.2
HERC4-206ENST00000427635 HMCN1Q96RW7 5635 aa1.26□□□□□ -2.21
HERC4-206ENST00000427635 KRTAP5-7Q6L8G8 165 aa1.26□□□□□ -2.21
HERC4-206ENST00000427635 AHNAKQ09666 5890 aaKnown RBP1.25□□□□□ -2.21
HERC4-206ENST00000427635 KRTAP5-4Q6L8H1 288 aa1.24□□□□□ -2.21
HERC4-206ENST00000427635 KRTAP4-4Q9BYR3 166 aa1.21□□□□□ -2.22
HERC4-206ENST00000427635 KRTAP5-5Q701N2 237 aaPredicted RBP1.18□□□□□ -2.22
HERC4-206ENST00000427635 MUC19Q7Z5P9 8384 aa1.16□□□□□ -2.22
HERC4-206ENST00000427635 KRTAP5-8O75690 187 aa1.13□□□□□ -2.23
HERC4-206ENST00000427635 MUC5ACP98088 5654 aa1.11□□□□□ -2.23
HERC4-206ENST00000427635 PHGR1C9JFL3 82 aa1.1□□□□□ -2.23
HERC4-206ENST00000427635 KRTAP5-11Q6L8G4 156 aa1.1□□□□□ -2.23
HERC4-206ENST00000427635 KRTAP5-10Q6L8G5 202 aa1.08□□□□□ -2.24
HERC4-206ENST00000427635 KRTAP5-1Q6L8H4 278 aa1□□□□□ -2.25
HERC4-206ENST00000427635 KRTAP21-1Q3LI58 79 aa0.95□□□□□ -2.26
HERC4-206ENST00000427635 KRTAP21-2Q3LI59 83 aa0.78□□□□□ -2.28
HERC4-206ENST00000427635 MUC16Q8WXI7 14507 aa0.6□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 8.7 ms