RNA–Protein interactions for RNA: ENST00000427635.6

HERC4-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 6,391 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-206ENST00000427635 DCAF8L2P0C7V8 631 aa9.97□□□□□ -0.81
HERC4-206ENST00000427635 SLC24A1O60721 1099 aa9.95□□□□□ -0.82
HERC4-206ENST00000427635 MYT1Q01538 1121 aa9.67□□□□□ -0.86
HERC4-206ENST00000427635 EHMT2Q96KQ7 1210 aa9.47□□□□□ -0.89
HERC4-206ENST00000427635 FAM9AQ8IZU1 332 aaPredicted RBP9.4□□□□□ -0.9
HERC4-206ENST00000427635 PELP1Q8IZL8 1130 aaKnown RBP9.37□□□□□ -0.91
HERC4-206ENST00000427635 TTBK1Q5TCY1 1321 aaPredicted RBP9.31□□□□□ -0.92
HERC4-206ENST00000427635 ERICH6Q7L0X2 663 aa9.29□□□□□ -0.92
HERC4-206ENST00000427635 RANGAP1P46060 587 aaPredicted RBP9.11□□□□□ -0.95
HERC4-206ENST00000427635 APLP2Q06481 763 aa9.09□□□□□ -0.95
HERC4-206ENST00000427635 DAXXQ9UER7 740 aaPredicted RBP9.06□□□□□ -0.96
HERC4-206ENST00000427635 SUPT5HO00267 1087 aaKnown RBP9□□□□□ -0.97
HERC4-206ENST00000427635 CHIC1Q5VXU3 224 aa8.9□□□□□ -0.98
HERC4-206ENST00000427635 ATP1B4Q9UN42 357 aaPredicted RBP8.82□□□□□ -1
HERC4-206ENST00000427635 PLPPR3Q6T4P5 718 aa8.79□□□□□ -1
HERC4-206ENST00000427635 SHROOM4Q9ULL8 1493 aa8.79□□□□□ -1
HERC4-206ENST00000427635 MYT1LQ9UL68 1186 aa8.79□□□□□ -1
HERC4-206ENST00000427635 RTN4Q9NQC3 1192 aaKnown RBP8.78□□□□□ -1
HERC4-206ENST00000427635 NISCHQ9Y2I1 1504 aa8.77□□□□□ -1.01
HERC4-206ENST00000427635 NCBP3Q53F19 620 aaKnown RBP8.75□□□□□ -1.01
HERC4-206ENST00000427635 AMER1Q5JTC6 1135 aaPredicted RBP8.75□□□□□ -1.01
HERC4-206ENST00000427635 CCER1Q8TC90 406 aaPredicted RBP8.7□□□□□ -1.02
HERC4-206ENST00000427635 PRKCSHP14314 528 aaPredicted RBP8.66□□□□□ -1.02
HERC4-206ENST00000427635 EIF5BO60841 1220 aaKnown RBP8.63□□□□□ -1.03
HERC4-206ENST00000427635 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.56□□□□□ -1.04
HERC4-206ENST00000427635 HNRNPUL2Q1KMD3 747 aaKnown RBP8.56□□□□□ -1.04
HERC4-206ENST00000427635 ARXQ96QS3 562 aa8.54□□□□□ -1.04
HERC4-206ENST00000427635 HOMEZQ8IX15 550 aa8.52□□□□□ -1.05
HERC4-206ENST00000427635 TULP1O00294 542 aaPredicted RBP8.51□□□□□ -1.05
HERC4-206ENST00000427635 UBTFP17480 764 aaKnown RBP8.48□□□□□ -1.05
HERC4-206ENST00000427635 SLC4A1APQ9BWU0 796 aaKnown RBP8.47□□□□□ -1.05
HERC4-206ENST00000427635 NEFLP07196 543 aa8.45□□□□□ -1.06
HERC4-206ENST00000427635 HAP1P54257 671 aaPredicted RBP8.42□□□□□ -1.06
HERC4-206ENST00000427635 PODXL2Q9NZ53 605 aa8.42□□□□□ -1.06
HERC4-206ENST00000427635 POLR3GLQ9BT43 218 aa8.4□□□□□ -1.07
HERC4-206ENST00000427635 TPRNQ4KMQ1 711 aa8.39□□□□□ -1.07
HERC4-206ENST00000427635 TRIM41Q8WV44 630 aa8.39□□□□□ -1.07
HERC4-206ENST00000427635 PCGF6Q9BYE7 350 aa8.39□□□□□ -1.07
HERC4-206ENST00000427635 KCNA4P22459 653 aa8.37□□□□□ -1.07
HERC4-206ENST00000427635 TIMELESSQ9UNS1 1208 aa8.36□□□□□ -1.07
HERC4-206ENST00000427635 CENPBP07199 599 aaPredicted RBP8.36□□□□□ -1.07
HERC4-206ENST00000427635 BCANQ96GW7 911 aa8.36□□□□□ -1.07
HERC4-206ENST00000427635 NPM2Q86SE8 214 aaKnown RBP8.3□□□□□ -1.08
HERC4-206ENST00000427635 ZEB1P37275 1124 aaPredicted RBP8.28□□□□□ -1.08
HERC4-206ENST00000427635 C14orf37Q86TY3 774 aa8.27□□□□□ -1.08
HERC4-206ENST00000427635 TAOK2Q9UL54 1235 aa8.27□□□□□ -1.08
HERC4-206ENST00000427635 ESF1Q9H501 851 aaKnown RBP8.23□□□□□ -1.09
HERC4-206ENST00000427635 ZBTB47Q9UFB7 747 aaPredicted RBP8.23□□□□□ -1.09
HERC4-206ENST00000427635 ITGAEP38570 1179 aa8.22□□□□□ -1.09
HERC4-206ENST00000427635 YTHDC1Q96MU7 727 aaKnown RBP8.2□□□□□ -1.1
HERC4-206ENST00000427635 CLSPNQ9HAW4 1339 aa8.19□□□□□ -1.1
HERC4-206ENST00000427635 CSRNP3Q8WYN3 585 aa8.19□□□□□ -1.1
HERC4-206ENST00000427635 CNGB1Q14028 1251 aaPredicted RBP8.18□□□□□ -1.1
HERC4-206ENST00000427635 GTF3C3Q9Y5Q9 886 aa8.18□□□□□ -1.1
HERC4-206ENST00000427635 FBLN2P98095 1184 aa8.17□□□□□ -1.1
HERC4-206ENST00000427635 ZNF316A6NFI3 1004 aaPredicted RBP8.16□□□□□ -1.1
HERC4-206ENST00000427635 KLHL34Q8N239 644 aa8.15□□□□□ -1.1
HERC4-206ENST00000427635 NEFMP07197 916 aa8.15□□□□□ -1.1
HERC4-206ENST00000427635 ABCC9O60706 1549 aa8.11□□□□□ -1.11
HERC4-206ENST00000427635 BCL11AQ9H165 835 aa8.11□□□□□ -1.11
HERC4-206ENST00000427635 TRIM52Q96A61 297 aa8.1□□□□□ -1.11
HERC4-206ENST00000427635 STAG3Q9UJ98 1225 aa8.08□□□□□ -1.12
HERC4-206ENST00000427635 NPM1P06748 294 aaKnown RBP eCLIP8.07□□□□□ -1.12
HERC4-206ENST00000427635 CDK11BP21127 795 aaKnown RBP8.07□□□□□ -1.12
HERC4-206ENST00000427635 CDK11AQ9UQ88 783 aaPredicted RBP8.07□□□□□ -1.12
HERC4-206ENST00000427635 FAM50AQ14320 339 aaKnown RBP8.04□□□□□ -1.12
HERC4-206ENST00000427635 AEBP2Q6ZN18 517 aaPredicted RBP8.04□□□□□ -1.12
HERC4-206ENST00000427635 PPARGC1BQ86YN6 1023 aaKnown RBP8.02□□□□□ -1.13
HERC4-206ENST00000427635 CANXP27824 592 aaKnown RBP8.01□□□□□ -1.13
HERC4-206ENST00000427635 SCAF1Q9H7N4 1312 aaKnown RBP8.01□□□□□ -1.13
HERC4-206ENST00000427635 A0A0G2JS52 829 aa8□□□□□ -1.13
HERC4-206ENST00000427635 PABPN1Q86U42 306 aaKnown RBP eCLIP7.98□□□□□ -1.13
HERC4-206ENST00000427635 ZNF326Q5BKZ1 582 aaKnown RBP7.97□□□□□ -1.13
HERC4-206ENST00000427635 PLEKHG5O94827 1062 aa7.97□□□□□ -1.13
HERC4-206ENST00000427635 RTL5Q5HYW3 569 aaPredicted RBP7.95□□□□□ -1.14
HERC4-206ENST00000427635 PLCB2Q00722 1185 aa7.95□□□□□ -1.14
HERC4-206ENST00000427635 FBXO3Q9UK99 471 aa7.94□□□□□ -1.14
HERC4-206ENST00000427635 CHGAP10645 457 aaKnown RBP7.93□□□□□ -1.14
HERC4-206ENST00000427635 HMGB1P09429 215 aaKnown RBP7.89□□□□□ -1.15
HERC4-206ENST00000427635 ZNF777Q9ULD5 760 aaPredicted RBP7.88□□□□□ -1.15
HERC4-206ENST00000427635 NEUROD1Q13562 356 aa7.87□□□□□ -1.15
HERC4-206ENST00000427635 ARID3AQ99856 593 aa7.87□□□□□ -1.15
HERC4-206ENST00000427635 PDIA4P13667 645 aaKnown RBP7.87□□□□□ -1.15
HERC4-206ENST00000427635 ZBTB7CA1YPR0 619 aa7.85□□□□□ -1.15
HERC4-206ENST00000427635 PHF23Q9BUL5 403 aaPredicted RBP7.85□□□□□ -1.15
HERC4-206ENST00000427635 ARID3CA6NKF2 412 aa7.84□□□□□ -1.15
HERC4-206ENST00000427635 TRIM26Q12899 539 aaPredicted RBP7.84□□□□□ -1.16
HERC4-206ENST00000427635 TMEM132AQ24JP5 1023 aa7.83□□□□□ -1.16
HERC4-206ENST00000427635 PDE4CQ08493 712 aa7.83□□□□□ -1.16
HERC4-206ENST00000427635 NBR1Q14596 966 aa7.82□□□□□ -1.16
HERC4-206ENST00000427635 ARID4BQ4LE39 1312 aaPredicted RBP7.81□□□□□ -1.16
HERC4-206ENST00000427635 NPHP1O15259 732 aa7.8□□□□□ -1.16
HERC4-206ENST00000427635 ANP32CO43423 234 aa7.8□□□□□ -1.16
HERC4-206ENST00000427635 FKBP8Q14318 412 aa7.8□□□□□ -1.16
HERC4-206ENST00000427635 PPP1R15AO75807 674 aaPredicted RBP7.79□□□□□ -1.16
HERC4-206ENST00000427635 GLIPR1L2Q4G1C9 344 aa7.78□□□□□ -1.16
HERC4-206ENST00000427635 ANP32BQ92688 251 aaKnown RBP7.77□□□□□ -1.17
HERC4-206ENST00000427635 HSP90AA1P07900 732 aaKnown RBP7.76□□□□□ -1.17
HERC4-206ENST00000427635 PKNOX2Q96KN3 472 aa7.75□□□□□ -1.17
HERC4-206ENST00000427635 TRHP20396 242 aaPredicted RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 146.8 ms