RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 KRTAP2-3P0C7H8 128 aa3.33□□□□□ -1.88
USP54-205ENST00000424265 KRTAP2-4Q9BYR9 128 aa3.33□□□□□ -1.88
USP54-205ENST00000424265 KRTAP2-1Q9BYU5 128 aa3.33□□□□□ -1.88
USP54-205ENST00000424265 KRTAP19-3Q7Z4W3 81 aa3.33□□□□□ -1.88
USP54-205ENST00000424265 KRTAP6-3Q3LI67 103 aa3.32□□□□□ -1.88
USP54-205ENST00000424265 SPRR2DP22532 72 aa3.31□□□□□ -1.88
USP54-205ENST00000424265 USH2AO75445 5202 aa3.28□□□□□ -1.88
USP54-205ENST00000424265 MT1LQ93083 61 aa3.28□□□□□ -1.88
USP54-205ENST00000424265 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.27□□□□□ -1.89
USP54-205ENST00000424265 KRTAP19-7Q3SYF9 63 aa3.23□□□□□ -1.89
USP54-205ENST00000424265 LCE1AQ5T7P2 110 aa3.23□□□□□ -1.89
USP54-205ENST00000424265 KRTAP9-7A8MTY7 169 aa3.22□□□□□ -1.89
USP54-205ENST00000424265 MT1MQ8N339 61 aa3.18□□□□□ -1.9
USP54-205ENST00000424265 FSIP2Q5CZC0 6907 aa3.14□□□□□ -1.91
USP54-205ENST00000424265 KRTAP5-9P26371 169 aa3.13□□□□□ -1.91
USP54-205ENST00000424265 KRTAP9-6A8MVA2 160 aa3.11□□□□□ -1.91
USP54-205ENST00000424265 PRM1P04553 51 aa3.1□□□□□ -1.91
USP54-205ENST00000424265 SSPOA2VEC9 5147 aa3.08□□□□□ -1.92
USP54-205ENST00000424265 LCE3BQ5TA77 95 aa3.08□□□□□ -1.92
USP54-205ENST00000424265 KRTAP2-2Q9BYT5 123 aa3.08□□□□□ -1.92
USP54-205ENST00000424265 LCE5AQ5TCM9 118 aa3.08□□□□□ -1.92
USP54-205ENST00000424265 FCGBPQ9Y6R7 5405 aaPredicted RBP3.06□□□□□ -1.92
USP54-205ENST00000424265 KRTAP20-1Q3LI63 56 aa3.03□□□□□ -1.92
USP54-205ENST00000424265 KRTAP4-7Q9BYR0 210 aa3.01□□□□□ -1.93
USP54-205ENST00000424265 LCE1EQ5T753 118 aa2.95□□□□□ -1.94
USP54-205ENST00000424265 LCE3EQ5T5B0 92 aa2.94□□□□□ -1.94
USP54-205ENST00000424265 LCE3DQ9BYE3 92 aa2.92□□□□□ -1.94
USP54-205ENST00000424265 LCE4AQ5TA78 99 aa2.91□□□□□ -1.94
USP54-205ENST00000424265 MT1AP04731 61 aa2.91□□□□□ -1.94
USP54-205ENST00000424265 KRTAP4-3Q9BYR4 195 aa2.91□□□□□ -1.94
USP54-205ENST00000424265 MACF1Q9UPN3 7388 aaKnown RBP2.89□□□□□ -1.95
USP54-205ENST00000424265 SYNE2Q8WXH0 6885 aaKnown RBP2.84□□□□□ -1.95
USP54-205ENST00000424265 NEBP20929 6669 aa2.83□□□□□ -1.96
USP54-205ENST00000424265 LCE1DQ5T752 114 aa2.83□□□□□ -1.96
USP54-205ENST00000424265 MT3P25713 68 aa2.83□□□□□ -1.96
USP54-205ENST00000424265 LOC100996750A0A140TA64 210 aa2.82□□□□□ -1.96
USP54-205ENST00000424265 MT4P47944 62 aa2.79□□□□□ -1.96
USP54-205ENST00000424265 GPR98Q8WXG9 6306 aa2.79□□□□□ -1.96
USP54-205ENST00000424265 KRTAP4-9Q9BYQ8 210 aa2.77□□□□□ -1.97
USP54-205ENST00000424265 KMT2DO14686 5537 aa2.75□□□□□ -1.97
USP54-205ENST00000424265 KRTAP9-4Q9BYQ2 154 aa2.71□□□□□ -1.98
USP54-205ENST00000424265 SYNE1Q8NF91 8797 aaKnown RBP2.71□□□□□ -1.98
USP54-205ENST00000424265 LCE1FQ5T754 118 aa2.7□□□□□ -1.98
USP54-205ENST00000424265 KRTAP6-2Q3LI66 62 aa2.7□□□□□ -1.98
USP54-205ENST00000424265 KRTAP6-1Q3LI64 71 aa2.69□□□□□ -1.98
USP54-205ENST00000424265 MDN1Q9NU22 5596 aa2.67□□□□□ -1.98
USP54-205ENST00000424265 MUC12Q9UKN1 5478 aa2.64□□□□□ -1.99
USP54-205ENST00000424265 KRTAP5-5Q701N2 237 aaPredicted RBP2.64□□□□□ -1.99
USP54-205ENST00000424265 KRTAP5-4Q6L8H1 288 aa2.54□□□□□ -2
USP54-205ENST00000424265 KRTAP20-2Q3LI61 65 aa2.53□□□□□ -2.01
USP54-205ENST00000424265 LCE1BQ5T7P3 118 aa2.48□□□□□ -2.01
USP54-205ENST00000424265 OBSCNQ5VST9 7968 aa2.47□□□□□ -2.01
USP54-205ENST00000424265 KRTAP4-6Q9BYQ5 205 aa2.46□□□□□ -2.02
USP54-205ENST00000424265 DSTQ03001 7570 aaKnown RBP2.43□□□□□ -2.02
USP54-205ENST00000424265 LCE1CQ5T751 118 aa2.33□□□□□ -2.04
USP54-205ENST00000424265 KRTAP5-2Q701N4 177 aa2.27□□□□□ -2.05
USP54-205ENST00000424265 KRTAP9-9Q9BYP9 154 aa2.26□□□□□ -2.05
USP54-205ENST00000424265 KRTAP4-11Q9BYQ6 195 aa2.25□□□□□ -2.05
USP54-205ENST00000424265 KRTAP5-3Q6L8H2 238 aa2.24□□□□□ -2.05
USP54-205ENST00000424265 HMCN1Q96RW7 5635 aa2.16□□□□□ -2.06
USP54-205ENST00000424265 AHNAK2Q8IVF2 5795 aa2.05□□□□□ -2.08
USP54-205ENST00000424265 MUC19Q7Z5P9 8384 aa2.03□□□□□ -2.08
USP54-205ENST00000424265 KRTAP5-8O75690 187 aa2.01□□□□□ -2.09
USP54-205ENST00000424265 KRTAP5-10Q6L8G5 202 aa1.98□□□□□ -2.09
USP54-205ENST00000424265 KRTAP5-7Q6L8G8 165 aa1.94□□□□□ -2.1
USP54-205ENST00000424265 KRTAP5-1Q6L8H4 278 aa1.93□□□□□ -2.1
USP54-205ENST00000424265 MUC5ACP98088 5654 aa1.9□□□□□ -2.1
USP54-205ENST00000424265 KRTAP4-2Q9BYR5 136 aa1.88□□□□□ -2.11
USP54-205ENST00000424265 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
USP54-205ENST00000424265 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.81□□□□□ -2.12
USP54-205ENST00000424265 KRTAP5-11Q6L8G4 156 aa1.8□□□□□ -2.12
USP54-205ENST00000424265 AHNAKQ09666 5890 aaKnown RBP1.79□□□□□ -2.12
USP54-205ENST00000424265 MUC5BQ9HC84 5762 aaPredicted RBP1.76□□□□□ -2.13
USP54-205ENST00000424265 KRTAP4-12Q9BQ66 201 aa1.74□□□□□ -2.13
USP54-205ENST00000424265 KRTAP21-2Q3LI59 83 aa1.64□□□□□ -2.15
USP54-205ENST00000424265 KRTAP4-4Q9BYR3 166 aa1.62□□□□□ -2.15
USP54-205ENST00000424265 PHGR1C9JFL3 82 aa1.58□□□□□ -2.16
USP54-205ENST00000424265 MUC16Q8WXI7 14507 aa0.97□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 31.9 ms