RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 KIAA1109Q2LD37 5005 aa1.06□□□□□ -2.24
SYNE1-212ENST00000423061 LCE3EQ5T5B0 92 aa1.06□□□□□ -2.24
SYNE1-212ENST00000423061 KRTAP9-4Q9BYQ2 154 aa1.06□□□□□ -2.24
SYNE1-212ENST00000423061 MT1LQ93083 61 aa1.06□□□□□ -2.24
SYNE1-212ENST00000423061 HMCN2Q8NDA2 5059 aa1.06□□□□□ -2.24
SYNE1-212ENST00000423061 LCE3DQ9BYE3 92 aa1.05□□□□□ -2.24
SYNE1-212ENST00000423061 KRTAP4-3Q9BYR4 195 aa1.05□□□□□ -2.24
SYNE1-212ENST00000423061 LPAP08519 4548 aa1.05□□□□□ -2.24
SYNE1-212ENST00000423061 KRTAP9-3Q9BYQ3 159 aa1.04□□□□□ -2.24
SYNE1-212ENST00000423061 PKHD1L1Q86WI1 4243 aa1.04□□□□□ -2.24
SYNE1-212ENST00000423061 ABCA13Q86UQ4 5058 aa1.04□□□□□ -2.24
SYNE1-212ENST00000423061 UBR4Q5T4S7 5183 aa1.04□□□□□ -2.24
SYNE1-212ENST00000423061 KRTAP19-2Q3LHN2 52 aa1.04□□□□□ -2.24
SYNE1-212ENST00000423061 KRTAP9-8Q9BYQ0 159 aa1.04□□□□□ -2.24
SYNE1-212ENST00000423061 TNXBP22105 4242 aa1.03□□□□□ -2.24
SYNE1-212ENST00000423061 LCE1DQ5T752 114 aa1.03□□□□□ -2.24
SYNE1-212ENST00000423061 MDN1Q9NU22 5596 aa1.03□□□□□ -2.24
SYNE1-212ENST00000423061 KRTAP19-3Q7Z4W3 81 aa1.03□□□□□ -2.25
SYNE1-212ENST00000423061 MT1EP04732 61 aa1.02□□□□□ -2.25
SYNE1-212ENST00000423061 SPRR2EP22531 72 aa1.02□□□□□ -2.25
SYNE1-212ENST00000423061 SPRR2BP35325 72 aa1.02□□□□□ -2.25
SYNE1-212ENST00000423061 SPRR2AP35326 72 aa1.02□□□□□ -2.25
SYNE1-212ENST00000423061 MUC2Q02817 5179 aa1.02□□□□□ -2.25
SYNE1-212ENST00000423061 RNF213Q63HN8 5207 aa1.01□□□□□ -2.25
SYNE1-212ENST00000423061 LCE1FQ5T754 118 aa1.01□□□□□ -2.25
SYNE1-212ENST00000423061 MT1MQ8N339 61 aa1□□□□□ -2.25
SYNE1-212ENST00000423061 KRTAP9-2Q9BYQ4 174 aa1□□□□□ -2.25
SYNE1-212ENST00000423061 KRTAP6-2Q3LI66 62 aa1□□□□□ -2.25
SYNE1-212ENST00000423061 SPRR2DP22532 72 aa0.99□□□□□ -2.25
SYNE1-212ENST00000423061 MT1AP04731 61 aa0.98□□□□□ -2.25
SYNE1-212ENST00000423061 LCE4AQ5TA78 99 aa0.98□□□□□ -2.25
SYNE1-212ENST00000423061 FAT4Q6V0I7 4981 aa0.98□□□□□ -2.25
SYNE1-212ENST00000423061 DSTQ03001 7570 aaKnown RBP0.97□□□□□ -2.25
SYNE1-212ENST00000423061 AHNAK2Q8IVF2 5795 aa0.96□□□□□ -2.26
SYNE1-212ENST00000423061 NEBP20929 6669 aa0.96□□□□□ -2.26
SYNE1-212ENST00000423061 KMT2DO14686 5537 aa0.95□□□□□ -2.26
SYNE1-212ENST00000423061 KRTAP5-5Q701N2 237 aaPredicted RBP0.94□□□□□ -2.26
SYNE1-212ENST00000423061 SYNE1Q8NF91 8797 aaKnown RBP0.94□□□□□ -2.26
SYNE1-212ENST00000423061 KRTAP19-7Q3SYF9 63 aa0.94□□□□□ -2.26
SYNE1-212ENST00000423061 OBSCNQ5VST9 7968 aa0.93□□□□□ -2.26
SYNE1-212ENST00000423061 KRTAP19-6Q3LI70 58 aa0.92□□□□□ -2.26
SYNE1-212ENST00000423061 HMCN1Q96RW7 5635 aa0.91□□□□□ -2.26
SYNE1-212ENST00000423061 FCGBPQ9Y6R7 5405 aaPredicted RBP0.9□□□□□ -2.27
SYNE1-212ENST00000423061 USH2AO75445 5202 aa0.89□□□□□ -2.27
SYNE1-212ENST00000423061 MUC12Q9UKN1 5478 aa0.89□□□□□ -2.27
SYNE1-212ENST00000423061 KRTAP6-1Q3LI64 71 aa0.88□□□□□ -2.27
SYNE1-212ENST00000423061 KRTAP4-11Q9BYQ6 195 aa0.87□□□□□ -2.27
SYNE1-212ENST00000423061 MT4P47944 62 aa0.85□□□□□ -2.27
SYNE1-212ENST00000423061 LCE1BQ5T7P3 118 aa0.85□□□□□ -2.27
SYNE1-212ENST00000423061 MUC5ACP98088 5654 aa0.81□□□□□ -2.28
SYNE1-212ENST00000423061 SSPOA2VEC9 5147 aa0.8□□□□□ -2.28
SYNE1-212ENST00000423061 KRTAP20-1Q3LI63 56 aa0.79□□□□□ -2.28
SYNE1-212ENST00000423061 KRTAP9-9Q9BYP9 154 aa0.79□□□□□ -2.28
SYNE1-212ENST00000423061 LCE1CQ5T751 118 aa0.78□□□□□ -2.28
SYNE1-212ENST00000423061 AHNAKQ09666 5890 aaKnown RBP0.78□□□□□ -2.29
SYNE1-212ENST00000423061 KRTAP4-4Q9BYR3 166 aa0.77□□□□□ -2.29
SYNE1-212ENST00000423061 KRTAP4-12Q9BQ66 201 aa0.76□□□□□ -2.29
SYNE1-212ENST00000423061 MUC19Q7Z5P9 8384 aa0.75□□□□□ -2.29
SYNE1-212ENST00000423061 MUC5BQ9HC84 5762 aaPredicted RBP0.75□□□□□ -2.29
SYNE1-212ENST00000423061 KRTAP20-2Q3LI61 65 aa0.73□□□□□ -2.29
SYNE1-212ENST00000423061 KRTAP4-2Q9BYR5 136 aa0.73□□□□□ -2.29
SYNE1-212ENST00000423061 KRTAP4-6Q9BYQ5 205 aa0.73□□□□□ -2.29
SYNE1-212ENST00000423061 KRTAP5-9P26371 169 aa0.72□□□□□ -2.29
SYNE1-212ENST00000423061 KRTAP5-2Q701N4 177 aa0.7□□□□□ -2.3
SYNE1-212ENST00000423061 KRTAP9-1A8MXZ3 250 aaPredicted RBP0.69□□□□□ -2.3
SYNE1-212ENST00000423061 KRTAP5-4Q6L8H1 288 aa0.64□□□□□ -2.31
SYNE1-212ENST00000423061 MUC16Q8WXI7 14507 aa0.63□□□□□ -2.31
SYNE1-212ENST00000423061 KRTAP21-1Q3LI58 79 aa0.6□□□□□ -2.31
SYNE1-212ENST00000423061 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.59□□□□□ -2.32
SYNE1-212ENST00000423061 KRTAP5-7Q6L8G8 165 aa0.57□□□□□ -2.32
SYNE1-212ENST00000423061 KRTAP5-8O75690 187 aa0.56□□□□□ -2.32
SYNE1-212ENST00000423061 KRTAP5-3Q6L8H2 238 aa0.56□□□□□ -2.32
SYNE1-212ENST00000423061 KRTAP5-1Q6L8H4 278 aa0.56□□□□□ -2.32
SYNE1-212ENST00000423061 KRTAP5-10Q6L8G5 202 aa0.55□□□□□ -2.32
SYNE1-212ENST00000423061 KRTAP5-11Q6L8G4 156 aa0.5□□□□□ -2.33
SYNE1-212ENST00000423061 PHGR1C9JFL3 82 aa0.48□□□□□ -2.33
SYNE1-212ENST00000423061 KRTAP21-2Q3LI59 83 aa0.45□□□□□ -2.34
Retrieved 77 of 20,778 RNA–protein pairs in 11.1 ms