RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 LCE1EQ5T753 118 aa2.58□□□□□ -2
SCN9A-203ENST00000409672 LCE1FQ5T754 118 aa2.58□□□□□ -2
SCN9A-203ENST00000409672 LCE1AQ5T7P2 110 aa2.58□□□□□ -2
SCN9A-203ENST00000409672 RYR3Q15413 4870 aa2.57□□□□□ -2
SCN9A-203ENST00000409672 MT1MQ8N339 61 aa2.55□□□□□ -2
SCN9A-203ENST00000409672 KRTAP9-7A8MTY7 169 aa2.55□□□□□ -2
SCN9A-203ENST00000409672 MUC17Q685J3 4493 aa2.54□□□□□ -2
SCN9A-203ENST00000409672 FSIP2Q5CZC0 6907 aa2.5□□□□□ -2.01
SCN9A-203ENST00000409672 KRTAP6-2Q3LI66 62 aa2.38□□□□□ -2.03
SCN9A-203ENST00000409672 KMT2CQ8NEZ4 4911 aaKnown RBP2.36□□□□□ -2.03
SCN9A-203ENST00000409672 KRTAP2-3P0C7H8 128 aa2.36□□□□□ -2.03
SCN9A-203ENST00000409672 KRTAP2-4Q9BYR9 128 aa2.36□□□□□ -2.03
SCN9A-203ENST00000409672 KRTAP2-1Q9BYU5 128 aa2.33□□□□□ -2.04
SCN9A-203ENST00000409672 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.33□□□□□ -2.04
SCN9A-203ENST00000409672 KRTAP19-2Q3LHN2 52 aa2.33□□□□□ -2.04
SCN9A-203ENST00000409672 HERC2O95714 4834 aa2.3□□□□□ -2.04
SCN9A-203ENST00000409672 KRTAP6-1Q3LI64 71 aa2.28□□□□□ -2.04
SCN9A-203ENST00000409672 LCE4AQ5TA78 99 aa2.28□□□□□ -2.04
SCN9A-203ENST00000409672 MT1AP04731 61 aa2.27□□□□□ -2.05
SCN9A-203ENST00000409672 BIRC6Q9NR09 4857 aa2.27□□□□□ -2.05
SCN9A-203ENST00000409672 KRTAP2-2Q9BYT5 123 aa2.26□□□□□ -2.05
SCN9A-203ENST00000409672 LCE2AQ5TA79 106 aaPredicted RBP2.25□□□□□ -2.05
SCN9A-203ENST00000409672 HMCN2Q8NDA2 5059 aa2.24□□□□□ -2.05
SCN9A-203ENST00000409672 KRTAP19-7Q3SYF9 63 aa2.24□□□□□ -2.05
SCN9A-203ENST00000409672 KIAA1109Q2LD37 5005 aa2.23□□□□□ -2.05
SCN9A-203ENST00000409672 KRTAP6-3Q3LI67 103 aa2.23□□□□□ -2.05
SCN9A-203ENST00000409672 RYR2Q92736 4967 aa2.23□□□□□ -2.05
SCN9A-203ENST00000409672 KRTAP9-9Q9BYP9 154 aa2.21□□□□□ -2.06
SCN9A-203ENST00000409672 HERC1Q15751 4861 aa2.2□□□□□ -2.06
SCN9A-203ENST00000409672 KRTAP9-4Q9BYQ2 154 aa2.2□□□□□ -2.06
SCN9A-203ENST00000409672 ABCA13Q86UQ4 5058 aa2.16□□□□□ -2.06
SCN9A-203ENST00000409672 UBR4Q5T4S7 5183 aa2.15□□□□□ -2.07
SCN9A-203ENST00000409672 EPPK1P58107 5090 aaKnown RBP2.15□□□□□ -2.07
SCN9A-203ENST00000409672 PCLOQ9Y6V0 5065 aa2.14□□□□□ -2.07
SCN9A-203ENST00000409672 KRTAP20-2Q3LI61 65 aa2.12□□□□□ -2.07
SCN9A-203ENST00000409672 KRTAP4-6Q9BYQ5 205 aa2.11□□□□□ -2.07
SCN9A-203ENST00000409672 MUC2Q02817 5179 aa2.1□□□□□ -2.07
SCN9A-203ENST00000409672 RNF213Q63HN8 5207 aa2.07□□□□□ -2.08
SCN9A-203ENST00000409672 KMT2DO14686 5537 aa2.06□□□□□ -2.08
SCN9A-203ENST00000409672 KRTAP4-4Q9BYR3 166 aa2.06□□□□□ -2.08
SCN9A-203ENST00000409672 KRTAP4-12Q9BQ66 201 aa2.06□□□□□ -2.08
SCN9A-203ENST00000409672 KRTAP4-2Q9BYR5 136 aa2.06□□□□□ -2.08
SCN9A-203ENST00000409672 KRTAP9-6A8MVA2 160 aa2.05□□□□□ -2.08
SCN9A-203ENST00000409672 SYNE1Q8NF91 8797 aaKnown RBP2.05□□□□□ -2.08
SCN9A-203ENST00000409672 KRTAP4-11Q9BYQ6 195 aa2.04□□□□□ -2.08
SCN9A-203ENST00000409672 DSTQ03001 7570 aaKnown RBP2.02□□□□□ -2.09
SCN9A-203ENST00000409672 OBSCNQ5VST9 7968 aa2.01□□□□□ -2.09
SCN9A-203ENST00000409672 FAT4Q6V0I7 4981 aa1.98□□□□□ -2.09
SCN9A-203ENST00000409672 MACF1Q9UPN3 7388 aaKnown RBP1.88□□□□□ -2.11
SCN9A-203ENST00000409672 USH2AO75445 5202 aa1.84□□□□□ -2.11
SCN9A-203ENST00000409672 FCGBPQ9Y6R7 5405 aaPredicted RBP1.84□□□□□ -2.12
SCN9A-203ENST00000409672 NEBP20929 6669 aa1.7□□□□□ -2.14
SCN9A-203ENST00000409672 SSPOA2VEC9 5147 aa1.69□□□□□ -2.14
SCN9A-203ENST00000409672 KRTAP5-9P26371 169 aa1.66□□□□□ -2.14
SCN9A-203ENST00000409672 KRTAP5-5Q701N2 237 aaPredicted RBP1.62□□□□□ -2.15
SCN9A-203ENST00000409672 KRTAP5-4Q6L8H1 288 aa1.61□□□□□ -2.15
SCN9A-203ENST00000409672 MUC19Q7Z5P9 8384 aa1.59□□□□□ -2.15
SCN9A-203ENST00000409672 PHGR1C9JFL3 82 aa1.55□□□□□ -2.16
SCN9A-203ENST00000409672 MUC12Q9UKN1 5478 aa1.55□□□□□ -2.16
SCN9A-203ENST00000409672 MDN1Q9NU22 5596 aa1.52□□□□□ -2.17
SCN9A-203ENST00000409672 KRTAP5-3Q6L8H2 238 aa1.5□□□□□ -2.17
SCN9A-203ENST00000409672 KRTAP5-8O75690 187 aa1.42□□□□□ -2.18
SCN9A-203ENST00000409672 MUC5BQ9HC84 5762 aaPredicted RBP1.4□□□□□ -2.19
SCN9A-203ENST00000409672 HMCN1Q96RW7 5635 aa1.39□□□□□ -2.19
SCN9A-203ENST00000409672 MUC5ACP98088 5654 aa1.31□□□□□ -2.2
SCN9A-203ENST00000409672 KRTAP5-2Q701N4 177 aa1.21□□□□□ -2.22
SCN9A-203ENST00000409672 KRTAP5-10Q6L8G5 202 aa1.15□□□□□ -2.23
SCN9A-203ENST00000409672 GPR98Q8WXG9 6306 aa1.13□□□□□ -2.23
SCN9A-203ENST00000409672 KRTAP5-1Q6L8H4 278 aa1.12□□□□□ -2.23
SCN9A-203ENST00000409672 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.08□□□□□ -2.24
SCN9A-203ENST00000409672 AHNAK2Q8IVF2 5795 aa1.06□□□□□ -2.24
SCN9A-203ENST00000409672 KRTAP5-7Q6L8G8 165 aa1.01□□□□□ -2.25
SCN9A-203ENST00000409672 KRTAP5-11Q6L8G4 156 aa0.98□□□□□ -2.25
SCN9A-203ENST00000409672 KRTAP21-2Q3LI59 83 aa0.96□□□□□ -2.26
SCN9A-203ENST00000409672 KRTAP21-1Q3LI58 79 aa0.94□□□□□ -2.26
SCN9A-203ENST00000409672 AHNAKQ09666 5890 aaKnown RBP0.89□□□□□ -2.27
SCN9A-203ENST00000409672 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 114.8 ms