RNA–Protein interactions for RNA: ENST00000400000.6

VAPA-202, Transcript of VAMP associated protein A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPA, Length 6,815 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-202ENST00000400000 MT3P25713 68 aa4.19□□□□□ -1.74
VAPA-202ENST00000400000 KRTAP19-6Q3LI70 58 aa4.19□□□□□ -1.74
VAPA-202ENST00000400000 LCE5AQ5TCM9 118 aa4.17□□□□□ -1.74
VAPA-202ENST00000400000 FSIP2Q5CZC0 6907 aa4.17□□□□□ -1.74
VAPA-202ENST00000400000 KMT2CQ8NEZ4 4911 aaKnown RBP4.16□□□□□ -1.74
VAPA-202ENST00000400000 PCLOQ9Y6V0 5065 aa4.14□□□□□ -1.75
VAPA-202ENST00000400000 KRTAP19-2Q3LHN2 52 aa4.1□□□□□ -1.75
VAPA-202ENST00000400000 HERC1Q15751 4861 aa4.08□□□□□ -1.76
VAPA-202ENST00000400000 KRTAP20-1Q3LI63 56 aa4.08□□□□□ -1.76
VAPA-202ENST00000400000 MUC17Q685J3 4493 aa4.06□□□□□ -1.76
VAPA-202ENST00000400000 BIRC6Q9NR09 4857 aa4.05□□□□□ -1.76
VAPA-202ENST00000400000 KRTAP9-7A8MTY7 169 aa3.99□□□□□ -1.77
VAPA-202ENST00000400000 LCE1CQ5T751 118 aa3.91□□□□□ -1.78
VAPA-202ENST00000400000 LCE1EQ5T753 118 aa3.91□□□□□ -1.78
VAPA-202ENST00000400000 LCE1FQ5T754 118 aa3.91□□□□□ -1.78
VAPA-202ENST00000400000 LCE1AQ5T7P2 110 aa3.91□□□□□ -1.78
VAPA-202ENST00000400000 KRTAP2-3P0C7H8 128 aa3.86□□□□□ -1.79
VAPA-202ENST00000400000 KRTAP2-4Q9BYR9 128 aa3.86□□□□□ -1.79
VAPA-202ENST00000400000 KRTAP2-1Q9BYU5 128 aa3.86□□□□□ -1.79
VAPA-202ENST00000400000 EPPK1P58107 5090 aaKnown RBP3.84□□□□□ -1.79
VAPA-202ENST00000400000 KRTAP6-2Q3LI66 62 aa3.83□□□□□ -1.8
VAPA-202ENST00000400000 KRTAP19-7Q3SYF9 63 aa3.83□□□□□ -1.8
VAPA-202ENST00000400000 HMCN2Q8NDA2 5059 aa3.83□□□□□ -1.8
VAPA-202ENST00000400000 MT1AP04731 61 aa3.81□□□□□ -1.8
VAPA-202ENST00000400000 LCE2AQ5TA79 106 aaPredicted RBP3.81□□□□□ -1.8
VAPA-202ENST00000400000 KRTAP6-1Q3LI64 71 aa3.78□□□□□ -1.8
VAPA-202ENST00000400000 MUC2Q02817 5179 aa3.76□□□□□ -1.81
VAPA-202ENST00000400000 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.74□□□□□ -1.81
VAPA-202ENST00000400000 FAT4Q6V0I7 4981 aa3.73□□□□□ -1.81
VAPA-202ENST00000400000 ABCA13Q86UQ4 5058 aa3.67□□□□□ -1.82
VAPA-202ENST00000400000 KRTAP6-3Q3LI67 103 aa3.64□□□□□ -1.83
VAPA-202ENST00000400000 UBR4Q5T4S7 5183 aa3.62□□□□□ -1.83
VAPA-202ENST00000400000 SYNE1Q8NF91 8797 aaKnown RBP3.62□□□□□ -1.83
VAPA-202ENST00000400000 KRTAP9-4Q9BYQ2 154 aa3.62□□□□□ -1.83
VAPA-202ENST00000400000 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
VAPA-202ENST00000400000 KRTAP2-2Q9BYT5 123 aa3.59□□□□□ -1.84
VAPA-202ENST00000400000 LCE4AQ5TA78 99 aa3.53□□□□□ -1.84
VAPA-202ENST00000400000 RNF213Q63HN8 5207 aa3.53□□□□□ -1.84
VAPA-202ENST00000400000 OBSCNQ5VST9 7968 aa3.5□□□□□ -1.85
VAPA-202ENST00000400000 KMT2DO14686 5537 aa3.39□□□□□ -1.87
VAPA-202ENST00000400000 KRTAP9-9Q9BYP9 154 aa3.39□□□□□ -1.87
VAPA-202ENST00000400000 KRTAP4-11Q9BYQ6 195 aa3.3□□□□□ -1.88
VAPA-202ENST00000400000 DSTQ03001 7570 aaKnown RBP3.29□□□□□ -1.88
VAPA-202ENST00000400000 KRTAP4-6Q9BYQ5 205 aa3.26□□□□□ -1.89
VAPA-202ENST00000400000 FCGBPQ9Y6R7 5405 aaPredicted RBP3.26□□□□□ -1.89
VAPA-202ENST00000400000 KRTAP4-4Q9BYR3 166 aa3.24□□□□□ -1.89
VAPA-202ENST00000400000 KRTAP20-2Q3LI61 65 aa3.23□□□□□ -1.89
VAPA-202ENST00000400000 KRTAP4-12Q9BQ66 201 aa3.2□□□□□ -1.9
VAPA-202ENST00000400000 KRTAP4-2Q9BYR5 136 aa3.2□□□□□ -1.9
VAPA-202ENST00000400000 MACF1Q9UPN3 7388 aaKnown RBP3.17□□□□□ -1.9
VAPA-202ENST00000400000 USH2AO75445 5202 aa3.11□□□□□ -1.91
VAPA-202ENST00000400000 SSPOA2VEC9 5147 aa3.01□□□□□ -1.93
VAPA-202ENST00000400000 NEBP20929 6669 aa3□□□□□ -1.93
VAPA-202ENST00000400000 KRTAP5-9P26371 169 aa2.85□□□□□ -1.95
VAPA-202ENST00000400000 MUC12Q9UKN1 5478 aa2.82□□□□□ -1.96
VAPA-202ENST00000400000 MUC19Q7Z5P9 8384 aa2.73□□□□□ -1.97
VAPA-202ENST00000400000 KRTAP5-4Q6L8H1 288 aa2.67□□□□□ -1.98
VAPA-202ENST00000400000 KRTAP5-5Q701N2 237 aaPredicted RBP2.6□□□□□ -1.99
VAPA-202ENST00000400000 MDN1Q9NU22 5596 aa2.52□□□□□ -2.01
VAPA-202ENST00000400000 KRTAP5-3Q6L8H2 238 aa2.44□□□□□ -2.02
VAPA-202ENST00000400000 MUC5ACP98088 5654 aa2.35□□□□□ -2.03
VAPA-202ENST00000400000 PHGR1C9JFL3 82 aa2.34□□□□□ -2.03
VAPA-202ENST00000400000 KRTAP5-8O75690 187 aa2.32□□□□□ -2.04
VAPA-202ENST00000400000 GPR98Q8WXG9 6306 aa2.25□□□□□ -2.05
VAPA-202ENST00000400000 HMCN1Q96RW7 5635 aa2.16□□□□□ -2.06
VAPA-202ENST00000400000 KRTAP5-2Q701N4 177 aa2.04□□□□□ -2.08
VAPA-202ENST00000400000 KRTAP5-10Q6L8G5 202 aa2.02□□□□□ -2.09
VAPA-202ENST00000400000 KRTAP5-1Q6L8H4 278 aa1.91□□□□□ -2.1
VAPA-202ENST00000400000 MUC5BQ9HC84 5762 aaPredicted RBP1.84□□□□□ -2.11
VAPA-202ENST00000400000 AHNAK2Q8IVF2 5795 aa1.77□□□□□ -2.13
VAPA-202ENST00000400000 KRTAP5-11Q6L8G4 156 aa1.71□□□□□ -2.14
VAPA-202ENST00000400000 KRTAP21-2Q3LI59 83 aa1.7□□□□□ -2.14
VAPA-202ENST00000400000 AHNAKQ09666 5890 aaKnown RBP1.68□□□□□ -2.14
VAPA-202ENST00000400000 KRTAP21-1Q3LI58 79 aa1.54□□□□□ -2.16
VAPA-202ENST00000400000 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.52□□□□□ -2.17
VAPA-202ENST00000400000 KRTAP5-7Q6L8G8 165 aa1.4□□□□□ -2.19
VAPA-202ENST00000400000 MUC16Q8WXI7 14507 aa1.31□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 8.5 ms