RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 LCE2DQ5TA82 110 aaPredicted RBP2.98□□□□□ -1.93
COL28A1-201ENST00000399429 FCGBPQ9Y6R7 5405 aaPredicted RBP2.96□□□□□ -1.94
COL28A1-201ENST00000399429 FSIP2Q5CZC0 6907 aa2.96□□□□□ -1.94
COL28A1-201ENST00000399429 LCE2BO14633 110 aa2.95□□□□□ -1.94
COL28A1-201ENST00000399429 KRTAP4-3Q9BYR4 195 aa2.94□□□□□ -1.94
COL28A1-201ENST00000399429 DSTQ03001 7570 aaKnown RBP2.94□□□□□ -1.94
COL28A1-201ENST00000399429 MT1EP04732 61 aa2.93□□□□□ -1.94
COL28A1-201ENST00000399429 LCE3DQ9BYE3 92 aa2.93□□□□□ -1.94
COL28A1-201ENST00000399429 KRTAP19-7Q3SYF9 63 aa2.93□□□□□ -1.94
COL28A1-201ENST00000399429 USH2AO75445 5202 aa2.91□□□□□ -1.94
COL28A1-201ENST00000399429 PRM1P04553 51 aa2.91□□□□□ -1.94
COL28A1-201ENST00000399429 LCE3EQ5T5B0 92 aa2.9□□□□□ -1.94
COL28A1-201ENST00000399429 KRTAP4-9Q9BYQ8 210 aa2.88□□□□□ -1.95
COL28A1-201ENST00000399429 SPRR2EP22531 72 aa2.82□□□□□ -1.96
COL28A1-201ENST00000399429 SPRR2BP35325 72 aa2.82□□□□□ -1.96
COL28A1-201ENST00000399429 SPRR2AP35326 72 aa2.82□□□□□ -1.96
COL28A1-201ENST00000399429 KRTAP9-2Q9BYQ4 174 aa2.81□□□□□ -1.96
COL28A1-201ENST00000399429 KRTAP19-3Q7Z4W3 81 aa2.79□□□□□ -1.96
COL28A1-201ENST00000399429 LCE2AQ5TA79 106 aaPredicted RBP2.77□□□□□ -1.97
COL28A1-201ENST00000399429 MT1MQ8N339 61 aa2.77□□□□□ -1.97
COL28A1-201ENST00000399429 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
COL28A1-201ENST00000399429 KRTAP9-7A8MTY7 169 aa2.74□□□□□ -1.97
COL28A1-201ENST00000399429 SPRR2DP22532 72 aa2.71□□□□□ -1.98
COL28A1-201ENST00000399429 SYNE2Q8WXH0 6885 aaKnown RBP2.71□□□□□ -1.98
COL28A1-201ENST00000399429 KRTAP9-6A0A140TA67 174 aa2.69□□□□□ -1.98
COL28A1-201ENST00000399429 MUC12Q9UKN1 5478 aa2.65□□□□□ -1.98
COL28A1-201ENST00000399429 KRTAP6-2Q3LI66 62 aa2.6□□□□□ -1.99
COL28A1-201ENST00000399429 SSPOA2VEC9 5147 aa2.59□□□□□ -1.99
COL28A1-201ENST00000399429 KRTAP19-6Q3LI70 58 aa2.59□□□□□ -2
COL28A1-201ENST00000399429 KRTAP6-1Q3LI64 71 aa2.58□□□□□ -2
COL28A1-201ENST00000399429 MT1AP04731 61 aa2.58□□□□□ -2
COL28A1-201ENST00000399429 MT3P25713 68 aa2.53□□□□□ -2
COL28A1-201ENST00000399429 LCE1AQ5T7P2 110 aa2.49□□□□□ -2.01
COL28A1-201ENST00000399429 MACF1Q9UPN3 7388 aaKnown RBP2.47□□□□□ -2.01
COL28A1-201ENST00000399429 MT4P47944 62 aa2.47□□□□□ -2.01
COL28A1-201ENST00000399429 KRTAP2-2Q9BYT5 123 aa2.45□□□□□ -2.02
COL28A1-201ENST00000399429 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.45□□□□□ -2.02
COL28A1-201ENST00000399429 LCE5AQ5TCM9 118 aa2.44□□□□□ -2.02
COL28A1-201ENST00000399429 LCE1BQ5T7P3 118 aa2.43□□□□□ -2.02
COL28A1-201ENST00000399429 LCE1DQ5T752 114 aa2.42□□□□□ -2.02
COL28A1-201ENST00000399429 KRTAP5-5Q701N2 237 aaPredicted RBP2.42□□□□□ -2.02
COL28A1-201ENST00000399429 KRTAP6-3Q3LI67 103 aa2.41□□□□□ -2.02
COL28A1-201ENST00000399429 LCE1EQ5T753 118 aa2.4□□□□□ -2.03
COL28A1-201ENST00000399429 KRTAP9-4Q9BYQ2 154 aa2.34□□□□□ -2.04
COL28A1-201ENST00000399429 KRTAP20-1Q3LI63 56 aa2.26□□□□□ -2.05
COL28A1-201ENST00000399429 MDN1Q9NU22 5596 aa2.22□□□□□ -2.05
COL28A1-201ENST00000399429 KRTAP4-11Q9BYQ6 195 aa2.19□□□□□ -2.06
COL28A1-201ENST00000399429 LCE1FQ5T754 118 aa2.19□□□□□ -2.06
COL28A1-201ENST00000399429 KRTAP5-9P26371 169 aa2.15□□□□□ -2.07
COL28A1-201ENST00000399429 KRTAP4-6Q9BYQ5 205 aa2.14□□□□□ -2.07
COL28A1-201ENST00000399429 NEBP20929 6669 aa2.12□□□□□ -2.07
COL28A1-201ENST00000399429 LCE4AQ5TA78 99 aa2.04□□□□□ -2.08
COL28A1-201ENST00000399429 LCE1CQ5T751 118 aa1.99□□□□□ -2.09
COL28A1-201ENST00000399429 GPR98Q8WXG9 6306 aa1.94□□□□□ -2.1
COL28A1-201ENST00000399429 MUC5ACP98088 5654 aa1.84□□□□□ -2.11
COL28A1-201ENST00000399429 KRTAP9-9Q9BYP9 154 aa1.83□□□□□ -2.12
COL28A1-201ENST00000399429 HMCN1Q96RW7 5635 aa1.82□□□□□ -2.12
COL28A1-201ENST00000399429 KRTAP20-2Q3LI61 65 aa1.82□□□□□ -2.12
COL28A1-201ENST00000399429 KRTAP4-12Q9BQ66 201 aa1.82□□□□□ -2.12
COL28A1-201ENST00000399429 KRTAP4-4Q9BYR3 166 aa1.82□□□□□ -2.12
COL28A1-201ENST00000399429 KRTAP5-3Q6L8H2 238 aa1.79□□□□□ -2.12
COL28A1-201ENST00000399429 KRTAP5-4Q6L8H1 288 aa1.78□□□□□ -2.12
COL28A1-201ENST00000399429 KRTAP5-10Q6L8G5 202 aa1.75□□□□□ -2.13
COL28A1-201ENST00000399429 KRTAP4-2Q9BYR5 136 aa1.69□□□□□ -2.14
COL28A1-201ENST00000399429 AHNAK2Q8IVF2 5795 aa1.63□□□□□ -2.15
COL28A1-201ENST00000399429 KRTAP5-2Q701N4 177 aa1.62□□□□□ -2.15
COL28A1-201ENST00000399429 KRTAP21-1Q3LI58 79 aa1.52□□□□□ -2.17
COL28A1-201ENST00000399429 MUC5BQ9HC84 5762 aaPredicted RBP1.5□□□□□ -2.17
COL28A1-201ENST00000399429 KRTAP5-1Q6L8H4 278 aa1.48□□□□□ -2.17
COL28A1-201ENST00000399429 KRTAP5-8O75690 187 aa1.47□□□□□ -2.17
COL28A1-201ENST00000399429 KRTAP21-2Q3LI59 83 aa1.46□□□□□ -2.18
COL28A1-201ENST00000399429 KRTAP5-7Q6L8G8 165 aa1.37□□□□□ -2.19
COL28A1-201ENST00000399429 AHNAKQ09666 5890 aaKnown RBP1.35□□□□□ -2.19
COL28A1-201ENST00000399429 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.35□□□□□ -2.19
COL28A1-201ENST00000399429 KRTAP5-11Q6L8G4 156 aa1.26□□□□□ -2.21
COL28A1-201ENST00000399429 PHGR1C9JFL3 82 aa1.14□□□□□ -2.23
COL28A1-201ENST00000399429 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 113 ms