RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 KRTAP2-3P0C7H8 128 aa3.48□□□□□ -1.85
HPS4-202ENST00000398145 KRTAP2-4Q9BYR9 128 aa3.48□□□□□ -1.85
HPS4-202ENST00000398145 KRTAP2-1Q9BYU5 128 aa3.48□□□□□ -1.85
HPS4-202ENST00000398145 MT1MQ8N339 61 aa3.43□□□□□ -1.86
HPS4-202ENST00000398145 LOC100996750A0A140TA64 210 aa3.42□□□□□ -1.86
HPS4-202ENST00000398145 SPRR2EP22531 72 aa3.42□□□□□ -1.86
HPS4-202ENST00000398145 SPRR2BP35325 72 aa3.42□□□□□ -1.86
HPS4-202ENST00000398145 SPRR2AP35326 72 aa3.42□□□□□ -1.86
HPS4-202ENST00000398145 KRTAP9-6A8MVA2 160 aa3.4□□□□□ -1.86
HPS4-202ENST00000398145 KRTAP4-3Q9BYR4 195 aa3.4□□□□□ -1.87
HPS4-202ENST00000398145 KRTAP19-6Q3LI70 58 aa3.34□□□□□ -1.88
HPS4-202ENST00000398145 PRM1P04553 51 aa3.32□□□□□ -1.88
HPS4-202ENST00000398145 USH2AO75445 5202 aa3.32□□□□□ -1.88
HPS4-202ENST00000398145 LCE2AQ5TA79 106 aaPredicted RBP3.29□□□□□ -1.88
HPS4-202ENST00000398145 SPRR2DP22532 72 aa3.29□□□□□ -1.88
HPS4-202ENST00000398145 OBSCNQ5VST9 7968 aa3.27□□□□□ -1.89
HPS4-202ENST00000398145 FCGBPQ9Y6R7 5405 aaPredicted RBP3.22□□□□□ -1.89
HPS4-202ENST00000398145 KRTAP4-9Q9BYQ8 210 aa3.22□□□□□ -1.89
HPS4-202ENST00000398145 MT3P25713 68 aa3.21□□□□□ -1.9
HPS4-202ENST00000398145 MT1AP04731 61 aa3.19□□□□□ -1.9
HPS4-202ENST00000398145 LCE2DQ5TA82 110 aaPredicted RBP3.17□□□□□ -1.9
HPS4-202ENST00000398145 DSTQ03001 7570 aaKnown RBP3.14□□□□□ -1.91
HPS4-202ENST00000398145 KMT2DO14686 5537 aa3.12□□□□□ -1.91
HPS4-202ENST00000398145 KRTAP6-1Q3LI64 71 aa3.06□□□□□ -1.92
HPS4-202ENST00000398145 LCE5AQ5TCM9 118 aa3.05□□□□□ -1.92
HPS4-202ENST00000398145 SYNE2Q8WXH0 6885 aaKnown RBP3.05□□□□□ -1.92
HPS4-202ENST00000398145 KRTAP6-2Q3LI66 62 aa2.99□□□□□ -1.93
HPS4-202ENST00000398145 KRTAP9-7A8MTY7 169 aa2.98□□□□□ -1.93
HPS4-202ENST00000398145 KRTAP9-2Q9BYQ4 174 aa2.97□□□□□ -1.93
HPS4-202ENST00000398145 KRTAP9-6A0A140TA67 174 aa2.96□□□□□ -1.94
HPS4-202ENST00000398145 MT4P47944 62 aa2.93□□□□□ -1.94
HPS4-202ENST00000398145 KRTAP9-4Q9BYQ2 154 aa2.92□□□□□ -1.94
HPS4-202ENST00000398145 LCE1DQ5T752 114 aa2.9□□□□□ -1.95
HPS4-202ENST00000398145 LCE1AQ5T7P2 110 aa2.9□□□□□ -1.95
HPS4-202ENST00000398145 MUC12Q9UKN1 5478 aa2.89□□□□□ -1.95
HPS4-202ENST00000398145 SSPOA2VEC9 5147 aa2.89□□□□□ -1.95
HPS4-202ENST00000398145 LCE1BQ5T7P3 118 aa2.88□□□□□ -1.95
HPS4-202ENST00000398145 KRTAP2-2Q9BYT5 123 aa2.75□□□□□ -1.97
HPS4-202ENST00000398145 MACF1Q9UPN3 7388 aaKnown RBP2.71□□□□□ -1.98
HPS4-202ENST00000398145 KRTAP6-3Q3LI67 103 aa2.69□□□□□ -1.98
HPS4-202ENST00000398145 MDN1Q9NU22 5596 aa2.64□□□□□ -1.99
HPS4-202ENST00000398145 LCE4AQ5TA78 99 aa2.6□□□□□ -1.99
HPS4-202ENST00000398145 KRTAP5-5Q701N2 237 aaPredicted RBP2.59□□□□□ -2
HPS4-202ENST00000398145 KRTAP5-9P26371 169 aa2.56□□□□□ -2
HPS4-202ENST00000398145 MUC19Q7Z5P9 8384 aa2.55□□□□□ -2
HPS4-202ENST00000398145 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.54□□□□□ -2
HPS4-202ENST00000398145 KRTAP20-1Q3LI63 56 aa2.49□□□□□ -2.01
HPS4-202ENST00000398145 KRTAP4-11Q9BYQ6 195 aa2.45□□□□□ -2.02
HPS4-202ENST00000398145 KRTAP4-6Q9BYQ5 205 aa2.4□□□□□ -2.02
HPS4-202ENST00000398145 KRTAP20-2Q3LI61 65 aa2.36□□□□□ -2.03
HPS4-202ENST00000398145 NEBP20929 6669 aa2.29□□□□□ -2.04
HPS4-202ENST00000398145 GPR98Q8WXG9 6306 aa2.28□□□□□ -2.04
HPS4-202ENST00000398145 LCE1CQ5T751 118 aa2.26□□□□□ -2.05
HPS4-202ENST00000398145 LCE1EQ5T753 118 aa2.26□□□□□ -2.05
HPS4-202ENST00000398145 LCE1FQ5T754 118 aa2.26□□□□□ -2.05
HPS4-202ENST00000398145 MUC5ACP98088 5654 aa2.16□□□□□ -2.06
HPS4-202ENST00000398145 KRTAP5-4Q6L8H1 288 aa2.15□□□□□ -2.06
HPS4-202ENST00000398145 KRTAP4-4Q9BYR3 166 aa2.11□□□□□ -2.07
HPS4-202ENST00000398145 HMCN1Q96RW7 5635 aa2.07□□□□□ -2.08
HPS4-202ENST00000398145 KRTAP9-9Q9BYP9 154 aa2.07□□□□□ -2.08
HPS4-202ENST00000398145 KRTAP5-10Q6L8G5 202 aa2□□□□□ -2.09
HPS4-202ENST00000398145 KRTAP4-12Q9BQ66 201 aa1.99□□□□□ -2.09
HPS4-202ENST00000398145 KRTAP4-2Q9BYR5 136 aa1.99□□□□□ -2.09
HPS4-202ENST00000398145 KRTAP5-2Q701N4 177 aa1.93□□□□□ -2.1
HPS4-202ENST00000398145 KRTAP5-3Q6L8H2 238 aa1.87□□□□□ -2.11
HPS4-202ENST00000398145 AHNAK2Q8IVF2 5795 aa1.86□□□□□ -2.11
HPS4-202ENST00000398145 KRTAP21-2Q3LI59 83 aa1.7□□□□□ -2.14
HPS4-202ENST00000398145 KRTAP5-1Q6L8H4 278 aa1.7□□□□□ -2.14
HPS4-202ENST00000398145 KRTAP5-8O75690 187 aa1.69□□□□□ -2.14
HPS4-202ENST00000398145 MUC5BQ9HC84 5762 aaPredicted RBP1.68□□□□□ -2.14
HPS4-202ENST00000398145 KRTAP5-11Q6L8G4 156 aa1.65□□□□□ -2.14
HPS4-202ENST00000398145 KRTAP21-1Q3LI58 79 aa1.64□□□□□ -2.15
HPS4-202ENST00000398145 AHNAKQ09666 5890 aaKnown RBP1.63□□□□□ -2.15
HPS4-202ENST00000398145 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.6□□□□□ -2.15
HPS4-202ENST00000398145 KRTAP5-7Q6L8G8 165 aa1.52□□□□□ -2.17
HPS4-202ENST00000398145 PHGR1C9JFL3 82 aa1.38□□□□□ -2.19
HPS4-202ENST00000398145 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 6.1 ms