RNA–Protein interactions for RNA: ENST00000397617.7

PTPRD-206, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 5 BASIC

Gene PTPRD, Length 8,248 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-206ENST00000397617 KRTAP19-3Q7Z4W3 81 aa2.05□□□□□ -2.08
PTPRD-206ENST00000397617 SYNE1Q8NF91 8797 aaKnown RBP2.04□□□□□ -2.08
PTPRD-206ENST00000397617 LCE5AQ5TCM9 118 aa2.02□□□□□ -2.09
PTPRD-206ENST00000397617 KRTAP2-3P0C7H8 128 aa2□□□□□ -2.09
PTPRD-206ENST00000397617 KRTAP2-4Q9BYR9 128 aa2□□□□□ -2.09
PTPRD-206ENST00000397617 KRTAP2-1Q9BYU5 128 aa2□□□□□ -2.09
PTPRD-206ENST00000397617 FSIP2Q5CZC0 6907 aa1.99□□□□□ -2.09
PTPRD-206ENST00000397617 MT1MQ8N339 61 aa1.97□□□□□ -2.09
PTPRD-206ENST00000397617 SPRR2FQ96RM1 72 aa1.96□□□□□ -2.1
PTPRD-206ENST00000397617 KRTAP6-3Q3LI67 103 aa1.95□□□□□ -2.1
PTPRD-206ENST00000397617 KRTAP4-8A0A0G2JLE6 195 aa1.95□□□□□ -2.1
PTPRD-206ENST00000397617 KRTAP4-8Q9BYQ9 185 aa1.95□□□□□ -2.1
PTPRD-206ENST00000397617 KRTAP9-2Q9BYQ4 174 aa1.94□□□□□ -2.1
PTPRD-206ENST00000397617 KRTAP12-4P60329 112 aa1.94□□□□□ -2.1
PTPRD-206ENST00000397617 MUC12Q9UKN1 5478 aa1.9□□□□□ -2.1
PTPRD-206ENST00000397617 KRTAP9-6A8MVA2 160 aa1.89□□□□□ -2.11
PTPRD-206ENST00000397617 MT1AP04731 61 aa1.87□□□□□ -2.11
PTPRD-206ENST00000397617 DSTQ03001 7570 aaKnown RBP1.84□□□□□ -2.11
PTPRD-206ENST00000397617 SPRR2EP22531 72 aa1.82□□□□□ -2.12
PTPRD-206ENST00000397617 SPRR2BP35325 72 aa1.82□□□□□ -2.12
PTPRD-206ENST00000397617 SPRR2AP35326 72 aa1.82□□□□□ -2.12
PTPRD-206ENST00000397617 MACF1Q9UPN3 7388 aaKnown RBP1.81□□□□□ -2.12
PTPRD-206ENST00000397617 SPRR2DP22532 72 aa1.8□□□□□ -2.12
PTPRD-206ENST00000397617 KRTAP5-5Q701N2 237 aaPredicted RBP1.8□□□□□ -2.12
PTPRD-206ENST00000397617 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.8□□□□□ -2.12
PTPRD-206ENST00000397617 KRTAP9-6A0A140TA67 174 aa1.79□□□□□ -2.12
PTPRD-206ENST00000397617 LCE3EQ5T5B0 92 aa1.77□□□□□ -2.13
PTPRD-206ENST00000397617 LCE3DQ9BYE3 92 aa1.77□□□□□ -2.13
PTPRD-206ENST00000397617 KRTAP5-4Q6L8H1 288 aa1.76□□□□□ -2.13
PTPRD-206ENST00000397617 NEBP20929 6669 aa1.75□□□□□ -2.13
PTPRD-206ENST00000397617 LCE4AQ5TA78 99 aa1.74□□□□□ -2.13
PTPRD-206ENST00000397617 KRTAP4-7Q9BYR0 210 aa1.72□□□□□ -2.13
PTPRD-206ENST00000397617 LCE3BQ5TA77 95 aa1.71□□□□□ -2.14
PTPRD-206ENST00000397617 SYNE2Q8WXH0 6885 aaKnown RBP1.67□□□□□ -2.14
PTPRD-206ENST00000397617 KRTAP9-4Q9BYQ2 154 aa1.67□□□□□ -2.14
PTPRD-206ENST00000397617 KRTAP9-7A8MTY7 169 aa1.66□□□□□ -2.14
PTPRD-206ENST00000397617 GPR98Q8WXG9 6306 aa1.66□□□□□ -2.14
PTPRD-206ENST00000397617 KRTAP2-2Q9BYT5 123 aa1.64□□□□□ -2.15
PTPRD-206ENST00000397617 KRTAP6-1Q3LI64 71 aa1.64□□□□□ -2.15
PTPRD-206ENST00000397617 KRTAP4-3Q9BYR4 195 aa1.63□□□□□ -2.15
PTPRD-206ENST00000397617 OBSCNQ5VST9 7968 aa1.63□□□□□ -2.15
PTPRD-206ENST00000397617 KRTAP20-1Q3LI63 56 aa1.63□□□□□ -2.15
PTPRD-206ENST00000397617 HMCN1Q96RW7 5635 aa1.62□□□□□ -2.15
PTPRD-206ENST00000397617 KRTAP5-2Q701N4 177 aa1.61□□□□□ -2.15
PTPRD-206ENST00000397617 LCE1EQ5T753 118 aa1.59□□□□□ -2.15
PTPRD-206ENST00000397617 LOC100996750A0A140TA64 210 aa1.58□□□□□ -2.16
PTPRD-206ENST00000397617 MUC5BQ9HC84 5762 aaPredicted RBP1.53□□□□□ -2.17
PTPRD-206ENST00000397617 KRTAP20-2Q3LI61 65 aa1.52□□□□□ -2.17
PTPRD-206ENST00000397617 AHNAK2Q8IVF2 5795 aa1.52□□□□□ -2.17
PTPRD-206ENST00000397617 LCE1DQ5T752 114 aa1.5□□□□□ -2.17
PTPRD-206ENST00000397617 KRTAP6-2Q3LI66 62 aa1.49□□□□□ -2.17
PTPRD-206ENST00000397617 KRTAP5-3Q6L8H2 238 aa1.49□□□□□ -2.17
PTPRD-206ENST00000397617 LCE1BQ5T7P3 118 aa1.49□□□□□ -2.17
PTPRD-206ENST00000397617 MT4P47944 62 aa1.48□□□□□ -2.17
PTPRD-206ENST00000397617 PRM1P04553 51 aa1.47□□□□□ -2.17
PTPRD-206ENST00000397617 MUC5ACP98088 5654 aa1.47□□□□□ -2.17
PTPRD-206ENST00000397617 KRTAP5-8O75690 187 aa1.45□□□□□ -2.18
PTPRD-206ENST00000397617 KRTAP5-7Q6L8G8 165 aa1.42□□□□□ -2.18
PTPRD-206ENST00000397617 LCE1CQ5T751 118 aa1.41□□□□□ -2.18
PTPRD-206ENST00000397617 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.41□□□□□ -2.18
PTPRD-206ENST00000397617 KRTAP5-10Q6L8G5 202 aa1.4□□□□□ -2.19
PTPRD-206ENST00000397617 KRTAP4-6Q9BYQ5 205 aa1.38□□□□□ -2.19
PTPRD-206ENST00000397617 AHNAKQ09666 5890 aaKnown RBP1.35□□□□□ -2.19
PTPRD-206ENST00000397617 KRTAP4-11Q9BYQ6 195 aa1.34□□□□□ -2.2
PTPRD-206ENST00000397617 LCE1FQ5T754 118 aa1.34□□□□□ -2.2
PTPRD-206ENST00000397617 KRTAP4-9Q9BYQ8 210 aa1.33□□□□□ -2.2
PTPRD-206ENST00000397617 KRTAP9-9Q9BYP9 154 aa1.33□□□□□ -2.2
PTPRD-206ENST00000397617 MUC19Q7Z5P9 8384 aa1.32□□□□□ -2.2
PTPRD-206ENST00000397617 KRTAP4-2Q9BYR5 136 aa1.31□□□□□ -2.2
PTPRD-206ENST00000397617 KRTAP5-1Q6L8H4 278 aa1.31□□□□□ -2.2
PTPRD-206ENST00000397617 KRTAP5-11Q6L8G4 156 aa1.27□□□□□ -2.21
PTPRD-206ENST00000397617 KRTAP21-2Q3LI59 83 aa1.15□□□□□ -2.23
PTPRD-206ENST00000397617 KRTAP4-12Q9BQ66 201 aa1.01□□□□□ -2.25
PTPRD-206ENST00000397617 PHGR1C9JFL3 82 aa1□□□□□ -2.25
PTPRD-206ENST00000397617 KRTAP21-1Q3LI58 79 aa0.94□□□□□ -2.26
PTPRD-206ENST00000397617 KRTAP4-4Q9BYR3 166 aa0.86□□□□□ -2.27
PTPRD-206ENST00000397617 MUC16Q8WXI7 14507 aa0.62□□□□□ -2.31
Retrieved 77 of 20,778 RNA–protein pairs in 407.8 ms