RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 LOC100996750A0A140TA64 210 aa1.6□□□□□ -2.15
VPS13C-204ENST00000395898 LCE1DQ5T752 114 aa1.59□□□□□ -2.16
VPS13C-204ENST00000395898 LCE1BQ5T7P3 118 aa1.58□□□□□ -2.16
VPS13C-204ENST00000395898 LCE2AQ5TA79 106 aaPredicted RBP1.58□□□□□ -2.16
VPS13C-204ENST00000395898 HMCN2Q8NDA2 5059 aa1.58□□□□□ -2.16
VPS13C-204ENST00000395898 KRTAP19-7Q3SYF9 63 aa1.58□□□□□ -2.16
VPS13C-204ENST00000395898 KIAA1109Q2LD37 5005 aa1.57□□□□□ -2.16
VPS13C-204ENST00000395898 KRTAP2-3P0C7H8 128 aa1.57□□□□□ -2.16
VPS13C-204ENST00000395898 KRTAP4-3Q9BYR4 195 aa1.57□□□□□ -2.16
VPS13C-204ENST00000395898 KRTAP2-4Q9BYR9 128 aa1.57□□□□□ -2.16
VPS13C-204ENST00000395898 KRTAP2-1Q9BYU5 128 aa1.57□□□□□ -2.16
VPS13C-204ENST00000395898 PCLOQ9Y6V0 5065 aa1.57□□□□□ -2.16
VPS13C-204ENST00000395898 MT1AP04731 61 aa1.56□□□□□ -2.16
VPS13C-204ENST00000395898 LCE1AQ5T7P2 110 aa1.55□□□□□ -2.16
VPS13C-204ENST00000395898 KRTAP9-6A0A140TA67 174 aa1.53□□□□□ -2.16
VPS13C-204ENST00000395898 HERC1Q15751 4861 aa1.53□□□□□ -2.17
VPS13C-204ENST00000395898 ABCA13Q86UQ4 5058 aa1.51□□□□□ -2.17
VPS13C-204ENST00000395898 KRTAP20-1Q3LI63 56 aa1.5□□□□□ -2.17
VPS13C-204ENST00000395898 LCE5AQ5TCM9 118 aa1.5□□□□□ -2.17
VPS13C-204ENST00000395898 LCE4AQ5TA78 99 aa1.49□□□□□ -2.17
VPS13C-204ENST00000395898 KRTAP6-3Q3LI67 103 aa1.48□□□□□ -2.17
VPS13C-204ENST00000395898 BIRC6Q9NR09 4857 aa1.48□□□□□ -2.17
VPS13C-204ENST00000395898 FSIP2Q5CZC0 6907 aa1.48□□□□□ -2.17
VPS13C-204ENST00000395898 KRTAP9-7A8MTY7 169 aa1.48□□□□□ -2.17
VPS13C-204ENST00000395898 KRTAP9-4Q9BYQ2 154 aa1.47□□□□□ -2.17
VPS13C-204ENST00000395898 KRTAP4-9Q9BYQ8 210 aa1.47□□□□□ -2.17
VPS13C-204ENST00000395898 EPPK1P58107 5090 aaKnown RBP1.46□□□□□ -2.18
VPS13C-204ENST00000395898 KRTAP6-2Q3LI66 62 aa1.45□□□□□ -2.18
VPS13C-204ENST00000395898 RNF213Q63HN8 5207 aa1.45□□□□□ -2.18
VPS13C-204ENST00000395898 SYNE1Q8NF91 8797 aaKnown RBP1.44□□□□□ -2.18
VPS13C-204ENST00000395898 KRTAP6-1Q3LI64 71 aa1.44□□□□□ -2.18
VPS13C-204ENST00000395898 KRTAP2-2Q9BYT5 123 aa1.42□□□□□ -2.18
VPS13C-204ENST00000395898 MUC2Q02817 5179 aa1.41□□□□□ -2.18
VPS13C-204ENST00000395898 KRTAP9-6A8MVA2 160 aa1.41□□□□□ -2.18
VPS13C-204ENST00000395898 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.41□□□□□ -2.18
VPS13C-204ENST00000395898 FAT4Q6V0I7 4981 aa1.4□□□□□ -2.19
VPS13C-204ENST00000395898 MUC19Q7Z5P9 8384 aa1.4□□□□□ -2.19
VPS13C-204ENST00000395898 LCE1CQ5T751 118 aa1.36□□□□□ -2.19
VPS13C-204ENST00000395898 LCE1EQ5T753 118 aa1.36□□□□□ -2.19
VPS13C-204ENST00000395898 LCE1FQ5T754 118 aa1.36□□□□□ -2.19
VPS13C-204ENST00000395898 DSTQ03001 7570 aaKnown RBP1.32□□□□□ -2.2
VPS13C-204ENST00000395898 KRTAP9-9Q9BYP9 154 aa1.31□□□□□ -2.2
VPS13C-204ENST00000395898 MACF1Q9UPN3 7388 aaKnown RBP1.29□□□□□ -2.2
VPS13C-204ENST00000395898 USH2AO75445 5202 aa1.29□□□□□ -2.2
VPS13C-204ENST00000395898 KMT2DO14686 5537 aa1.29□□□□□ -2.2
VPS13C-204ENST00000395898 KRTAP5-9P26371 169 aa1.28□□□□□ -2.21
VPS13C-204ENST00000395898 FCGBPQ9Y6R7 5405 aaPredicted RBP1.24□□□□□ -2.21
VPS13C-204ENST00000395898 MDN1Q9NU22 5596 aa1.21□□□□□ -2.22
VPS13C-204ENST00000395898 KRTAP4-6Q9BYQ5 205 aa1.19□□□□□ -2.22
VPS13C-204ENST00000395898 KRTAP20-2Q3LI61 65 aa1.19□□□□□ -2.22
VPS13C-204ENST00000395898 SSPOA2VEC9 5147 aa1.18□□□□□ -2.22
VPS13C-204ENST00000395898 KRTAP4-11Q9BYQ6 195 aa1.17□□□□□ -2.22
VPS13C-204ENST00000395898 KRTAP5-4Q6L8H1 288 aa1.13□□□□□ -2.23
VPS13C-204ENST00000395898 NEBP20929 6669 aa1.12□□□□□ -2.23
VPS13C-204ENST00000395898 AHNAKQ09666 5890 aaKnown RBP1.08□□□□□ -2.24
VPS13C-204ENST00000395898 KRTAP5-5Q701N2 237 aaPredicted RBP1.07□□□□□ -2.24
VPS13C-204ENST00000395898 MUC12Q9UKN1 5478 aa1.07□□□□□ -2.24
VPS13C-204ENST00000395898 HMCN1Q96RW7 5635 aa1.06□□□□□ -2.24
VPS13C-204ENST00000395898 KRTAP4-4Q9BYR3 166 aa1.05□□□□□ -2.24
VPS13C-204ENST00000395898 KRTAP4-12Q9BQ66 201 aa1.03□□□□□ -2.25
VPS13C-204ENST00000395898 KRTAP4-2Q9BYR5 136 aa1.03□□□□□ -2.25
VPS13C-204ENST00000395898 KRTAP5-3Q6L8H2 238 aa0.98□□□□□ -2.25
VPS13C-204ENST00000395898 AHNAK2Q8IVF2 5795 aa0.97□□□□□ -2.25
VPS13C-204ENST00000395898 MUC5ACP98088 5654 aa0.89□□□□□ -2.27
VPS13C-204ENST00000395898 KRTAP5-10Q6L8G5 202 aa0.88□□□□□ -2.27
VPS13C-204ENST00000395898 KRTAP5-8O75690 187 aa0.87□□□□□ -2.27
VPS13C-204ENST00000395898 KRTAP5-2Q701N4 177 aa0.87□□□□□ -2.27
VPS13C-204ENST00000395898 MUC5BQ9HC84 5762 aaPredicted RBP0.87□□□□□ -2.27
VPS13C-204ENST00000395898 GPR98Q8WXG9 6306 aa0.86□□□□□ -2.27
VPS13C-204ENST00000395898 PHGR1C9JFL3 82 aa0.82□□□□□ -2.28
VPS13C-204ENST00000395898 KRTAP5-11Q6L8G4 156 aa0.81□□□□□ -2.28
VPS13C-204ENST00000395898 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.78□□□□□ -2.29
VPS13C-204ENST00000395898 KRTAP5-7Q6L8G8 165 aa0.76□□□□□ -2.29
VPS13C-204ENST00000395898 KRTAP5-1Q6L8H4 278 aa0.76□□□□□ -2.29
VPS13C-204ENST00000395898 KRTAP21-2Q3LI59 83 aa0.74□□□□□ -2.29
VPS13C-204ENST00000395898 KRTAP21-1Q3LI58 79 aa0.68□□□□□ -2.3
VPS13C-204ENST00000395898 MUC16Q8WXI7 14507 aa0.57□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 131.1 ms