RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 KRTAP4-3Q9BYR4 195 aa5.36□□□□□ -1.55
PCDH1-203ENST00000394536 LOC100996750A0A140TA64 210 aa5.35□□□□□ -1.55
PCDH1-203ENST00000394536 SPRR2FQ96RM1 72 aa5.34□□□□□ -1.55
PCDH1-203ENST00000394536 KRTAP19-4Q3LI73 84 aa5.27□□□□□ -1.57
PCDH1-203ENST00000394536 KRTAP12-4P60329 112 aa5.27□□□□□ -1.57
PCDH1-203ENST00000394536 MUC12Q9UKN1 5478 aa5.23□□□□□ -1.57
PCDH1-203ENST00000394536 KRTAP2-3P0C7H8 128 aa5.22□□□□□ -1.57
PCDH1-203ENST00000394536 KRTAP2-4Q9BYR9 128 aa5.22□□□□□ -1.57
PCDH1-203ENST00000394536 KRTAP2-1Q9BYU5 128 aa5.22□□□□□ -1.57
PCDH1-203ENST00000394536 LCE3BQ5TA77 95 aa5.22□□□□□ -1.57
PCDH1-203ENST00000394536 KRTAP19-3Q7Z4W3 81 aa5.14□□□□□ -1.59
PCDH1-203ENST00000394536 SSPOA2VEC9 5147 aa5.13□□□□□ -1.59
PCDH1-203ENST00000394536 MT1MQ8N339 61 aa5.11□□□□□ -1.59
PCDH1-203ENST00000394536 KRTAP19-6Q3LI70 58 aa5.08□□□□□ -1.6
PCDH1-203ENST00000394536 SYNE2Q8WXH0 6885 aaKnown RBP5.05□□□□□ -1.6
PCDH1-203ENST00000394536 KRTAP4-9Q9BYQ8 210 aa4.97□□□□□ -1.61
PCDH1-203ENST00000394536 LCE2DQ5TA82 110 aaPredicted RBP4.95□□□□□ -1.62
PCDH1-203ENST00000394536 LCE3DQ9BYE3 92 aa4.85□□□□□ -1.63
PCDH1-203ENST00000394536 SPRR2EP22531 72 aa4.78□□□□□ -1.64
PCDH1-203ENST00000394536 SPRR2BP35325 72 aa4.78□□□□□ -1.64
PCDH1-203ENST00000394536 SPRR2AP35326 72 aa4.78□□□□□ -1.64
PCDH1-203ENST00000394536 MACF1Q9UPN3 7388 aaKnown RBP4.77□□□□□ -1.65
PCDH1-203ENST00000394536 LCE3EQ5T5B0 92 aa4.77□□□□□ -1.65
PCDH1-203ENST00000394536 LCE5AQ5TCM9 118 aa4.72□□□□□ -1.65
PCDH1-203ENST00000394536 KRTAP6-1Q3LI64 71 aa4.68□□□□□ -1.66
PCDH1-203ENST00000394536 PRM1P04553 51 aa4.63□□□□□ -1.67
PCDH1-203ENST00000394536 MT1AP04731 61 aa4.58□□□□□ -1.68
PCDH1-203ENST00000394536 MDN1Q9NU22 5596 aa4.56□□□□□ -1.68
PCDH1-203ENST00000394536 SPRR2DP22532 72 aa4.55□□□□□ -1.68
PCDH1-203ENST00000394536 KRTAP9-7A8MTY7 169 aa4.52□□□□□ -1.69
PCDH1-203ENST00000394536 KRTAP9-2Q9BYQ4 174 aa4.47□□□□□ -1.69
PCDH1-203ENST00000394536 LCE1AQ5T7P2 110 aa4.45□□□□□ -1.7
PCDH1-203ENST00000394536 MT3P25713 68 aa4.35□□□□□ -1.71
PCDH1-203ENST00000394536 KRTAP6-2Q3LI66 62 aa4.32□□□□□ -1.72
PCDH1-203ENST00000394536 KRTAP9-4Q9BYQ2 154 aa4.27□□□□□ -1.73
PCDH1-203ENST00000394536 MT4P47944 62 aa4.2□□□□□ -1.74
PCDH1-203ENST00000394536 KRTAP5-5Q701N2 237 aaPredicted RBP4.15□□□□□ -1.75
PCDH1-203ENST00000394536 KRTAP6-3Q3LI67 103 aa4.1□□□□□ -1.75
PCDH1-203ENST00000394536 KRTAP5-9P26371 169 aa4.09□□□□□ -1.76
PCDH1-203ENST00000394536 KRTAP9-6A0A140TA67 174 aa4.08□□□□□ -1.76
PCDH1-203ENST00000394536 LCE1DQ5T752 114 aa3.98□□□□□ -1.77
PCDH1-203ENST00000394536 LCE1EQ5T753 118 aa3.98□□□□□ -1.77
PCDH1-203ENST00000394536 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.95□□□□□ -1.78
PCDH1-203ENST00000394536 MUC19Q7Z5P9 8384 aa3.95□□□□□ -1.78
PCDH1-203ENST00000394536 LCE1BQ5T7P3 118 aa3.92□□□□□ -1.78
PCDH1-203ENST00000394536 KRTAP2-2Q9BYT5 123 aa3.9□□□□□ -1.79
PCDH1-203ENST00000394536 KRTAP4-6Q9BYQ5 205 aa3.85□□□□□ -1.79
PCDH1-203ENST00000394536 NEBP20929 6669 aa3.65□□□□□ -1.83
PCDH1-203ENST00000394536 KRTAP20-2Q3LI61 65 aa3.6□□□□□ -1.83
PCDH1-203ENST00000394536 LCE4AQ5TA78 99 aa3.6□□□□□ -1.83
PCDH1-203ENST00000394536 KRTAP4-11Q9BYQ6 195 aa3.54□□□□□ -1.84
PCDH1-203ENST00000394536 MUC5ACP98088 5654 aa3.48□□□□□ -1.85
PCDH1-203ENST00000394536 KRTAP5-4Q6L8H1 288 aa3.46□□□□□ -1.86
PCDH1-203ENST00000394536 HMCN1Q96RW7 5635 aa3.45□□□□□ -1.86
PCDH1-203ENST00000394536 KRTAP20-1Q3LI63 56 aa3.34□□□□□ -1.88
PCDH1-203ENST00000394536 LCE1FQ5T754 118 aa3.22□□□□□ -1.89
PCDH1-203ENST00000394536 KRTAP5-2Q701N4 177 aa3.2□□□□□ -1.9
PCDH1-203ENST00000394536 KRTAP4-4Q9BYR3 166 aa3.17□□□□□ -1.9
PCDH1-203ENST00000394536 KRTAP5-10Q6L8G5 202 aa3.12□□□□□ -1.91
PCDH1-203ENST00000394536 KRTAP5-3Q6L8H2 238 aa3.12□□□□□ -1.91
PCDH1-203ENST00000394536 KRTAP4-12Q9BQ66 201 aa2.97□□□□□ -1.93
PCDH1-203ENST00000394536 KRTAP4-2Q9BYR5 136 aa2.97□□□□□ -1.93
PCDH1-203ENST00000394536 LCE1CQ5T751 118 aa2.95□□□□□ -1.94
PCDH1-203ENST00000394536 AHNAK2Q8IVF2 5795 aa2.87□□□□□ -1.95
PCDH1-203ENST00000394536 KRTAP5-1Q6L8H4 278 aa2.82□□□□□ -1.96
PCDH1-203ENST00000394536 GPR98Q8WXG9 6306 aa2.82□□□□□ -1.96
PCDH1-203ENST00000394536 MUC5BQ9HC84 5762 aaPredicted RBP2.81□□□□□ -1.96
PCDH1-203ENST00000394536 KRTAP21-2Q3LI59 83 aa2.78□□□□□ -1.96
PCDH1-203ENST00000394536 KRTAP9-9Q9BYP9 154 aa2.69□□□□□ -1.98
PCDH1-203ENST00000394536 KRTAP5-8O75690 187 aa2.68□□□□□ -1.98
PCDH1-203ENST00000394536 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.54□□□□□ -2
PCDH1-203ENST00000394536 KRTAP21-1Q3LI58 79 aa2.52□□□□□ -2.01
PCDH1-203ENST00000394536 KRTAP5-11Q6L8G4 156 aa2.49□□□□□ -2.01
PCDH1-203ENST00000394536 AHNAKQ09666 5890 aaKnown RBP2.28□□□□□ -2.04
PCDH1-203ENST00000394536 KRTAP5-7Q6L8G8 165 aa2.28□□□□□ -2.04
PCDH1-203ENST00000394536 PHGR1C9JFL3 82 aa2.17□□□□□ -2.06
PCDH1-203ENST00000394536 MUC16Q8WXI7 14507 aa1.41□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 111 ms