RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 KRTAP9-6A0A140TA67 174 aa6.42□□□□□ -1.38
SHANK1-203ENST00000391813 MT1LQ93083 61 aa6.4□□□□□ -1.38
SHANK1-203ENST00000391813 MT1EP04732 61 aa6.33□□□□□ -1.4
SHANK1-203ENST00000391813 HMCN2Q8NDA2 5059 aa6.32□□□□□ -1.4
SHANK1-203ENST00000391813 KRTAP4-7Q9BYR0 210 aa6.27□□□□□ -1.41
SHANK1-203ENST00000391813 MT1MQ8N339 61 aa6.12□□□□□ -1.43
SHANK1-203ENST00000391813 SYNE1Q8NF91 8797 aaKnown RBP6.12□□□□□ -1.43
SHANK1-203ENST00000391813 KRTAP2-3P0C7H8 128 aa6.09□□□□□ -1.43
SHANK1-203ENST00000391813 KRTAP2-4Q9BYR9 128 aa6.09□□□□□ -1.43
SHANK1-203ENST00000391813 KRTAP2-1Q9BYU5 128 aa6.09□□□□□ -1.43
SHANK1-203ENST00000391813 FSIP2Q5CZC0 6907 aa6.07□□□□□ -1.44
SHANK1-203ENST00000391813 PRM1P04553 51 aa6.04□□□□□ -1.44
SHANK1-203ENST00000391813 KRTAP6-3Q3LI67 103 aa6□□□□□ -1.45
SHANK1-203ENST00000391813 KRTAP9-7A8MTY7 169 aa6□□□□□ -1.45
SHANK1-203ENST00000391813 LCE1AQ5T7P2 110 aa5.94□□□□□ -1.46
SHANK1-203ENST00000391813 KRTAP19-7Q3SYF9 63 aa5.93□□□□□ -1.46
SHANK1-203ENST00000391813 MT3P25713 68 aa5.86□□□□□ -1.47
SHANK1-203ENST00000391813 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.85□□□□□ -1.47
SHANK1-203ENST00000391813 LOC100996750A0A140TA64 210 aa5.85□□□□□ -1.47
SHANK1-203ENST00000391813 KRTAP20-1Q3LI63 56 aa5.84□□□□□ -1.47
SHANK1-203ENST00000391813 MUC2Q02817 5179 aa5.83□□□□□ -1.48
SHANK1-203ENST00000391813 MT4P47944 62 aa5.82□□□□□ -1.48
SHANK1-203ENST00000391813 KRTAP4-3Q9BYR4 195 aa5.75□□□□□ -1.49
SHANK1-203ENST00000391813 OBSCNQ5VST9 7968 aa5.74□□□□□ -1.49
SHANK1-203ENST00000391813 KRTAP9-6A8MVA2 160 aa5.68□□□□□ -1.5
SHANK1-203ENST00000391813 MT1AP04731 61 aa5.68□□□□□ -1.5
SHANK1-203ENST00000391813 SYNE2Q8WXH0 6885 aaKnown RBP5.65□□□□□ -1.51
SHANK1-203ENST00000391813 LCE5AQ5TCM9 118 aa5.56□□□□□ -1.52
SHANK1-203ENST00000391813 KRTAP2-2Q9BYT5 123 aa5.55□□□□□ -1.52
SHANK1-203ENST00000391813 KRTAP4-9Q9BYQ8 210 aa5.54□□□□□ -1.52
SHANK1-203ENST00000391813 LCE4AQ5TA78 99 aa5.51□□□□□ -1.53
SHANK1-203ENST00000391813 USH2AO75445 5202 aa5.45□□□□□ -1.54
SHANK1-203ENST00000391813 LCE1DQ5T752 114 aa5.35□□□□□ -1.55
SHANK1-203ENST00000391813 KRTAP6-2Q3LI66 62 aa5.33□□□□□ -1.56
SHANK1-203ENST00000391813 LCE1BQ5T7P3 118 aa5.3□□□□□ -1.56
SHANK1-203ENST00000391813 KRTAP6-1Q3LI64 71 aa5.28□□□□□ -1.56
SHANK1-203ENST00000391813 KRTAP5-9P26371 169 aa5.25□□□□□ -1.57
SHANK1-203ENST00000391813 DSTQ03001 7570 aaKnown RBP5.24□□□□□ -1.57
SHANK1-203ENST00000391813 FCGBPQ9Y6R7 5405 aaPredicted RBP5.23□□□□□ -1.57
SHANK1-203ENST00000391813 KRTAP9-4Q9BYQ2 154 aa5.22□□□□□ -1.57
SHANK1-203ENST00000391813 SSPOA2VEC9 5147 aa5.1□□□□□ -1.59
SHANK1-203ENST00000391813 NEBP20929 6669 aa5.01□□□□□ -1.61
SHANK1-203ENST00000391813 MACF1Q9UPN3 7388 aaKnown RBP4.99□□□□□ -1.61
SHANK1-203ENST00000391813 KMT2DO14686 5537 aa4.99□□□□□ -1.61
SHANK1-203ENST00000391813 MDN1Q9NU22 5596 aa4.73□□□□□ -1.65
SHANK1-203ENST00000391813 MUC12Q9UKN1 5478 aa4.69□□□□□ -1.66
SHANK1-203ENST00000391813 KRTAP20-2Q3LI61 65 aa4.62□□□□□ -1.67
SHANK1-203ENST00000391813 KRTAP9-9Q9BYP9 154 aa4.62□□□□□ -1.67
SHANK1-203ENST00000391813 KRTAP4-6Q9BYQ5 205 aa4.58□□□□□ -1.68
SHANK1-203ENST00000391813 GPR98Q8WXG9 6306 aa4.56□□□□□ -1.68
SHANK1-203ENST00000391813 LCE1CQ5T751 118 aa4.46□□□□□ -1.69
SHANK1-203ENST00000391813 LCE1EQ5T753 118 aa4.46□□□□□ -1.69
SHANK1-203ENST00000391813 LCE1FQ5T754 118 aa4.46□□□□□ -1.69
SHANK1-203ENST00000391813 KRTAP5-4Q6L8H1 288 aa4.44□□□□□ -1.7
SHANK1-203ENST00000391813 MUC19Q7Z5P9 8384 aa4.4□□□□□ -1.71
SHANK1-203ENST00000391813 KRTAP4-11Q9BYQ6 195 aa4.39□□□□□ -1.71
SHANK1-203ENST00000391813 KRTAP5-5Q701N2 237 aaPredicted RBP4.37□□□□□ -1.71
SHANK1-203ENST00000391813 KRTAP5-3Q6L8H2 238 aa3.98□□□□□ -1.77
SHANK1-203ENST00000391813 AHNAK2Q8IVF2 5795 aa3.89□□□□□ -1.79
SHANK1-203ENST00000391813 KRTAP4-12Q9BQ66 201 aa3.74□□□□□ -1.81
SHANK1-203ENST00000391813 KRTAP4-2Q9BYR5 136 aa3.74□□□□□ -1.81
SHANK1-203ENST00000391813 MUC5ACP98088 5654 aa3.73□□□□□ -1.81
SHANK1-203ENST00000391813 HMCN1Q96RW7 5635 aa3.72□□□□□ -1.81
SHANK1-203ENST00000391813 KRTAP4-4Q9BYR3 166 aa3.7□□□□□ -1.82
SHANK1-203ENST00000391813 KRTAP5-2Q701N4 177 aa3.63□□□□□ -1.83
SHANK1-203ENST00000391813 KRTAP5-8O75690 187 aa3.56□□□□□ -1.84
SHANK1-203ENST00000391813 KRTAP5-10Q6L8G5 202 aa3.41□□□□□ -1.86
SHANK1-203ENST00000391813 AHNAKQ09666 5890 aaKnown RBP3.21□□□□□ -1.9
SHANK1-203ENST00000391813 KRTAP5-1Q6L8H4 278 aa3.15□□□□□ -1.91
SHANK1-203ENST00000391813 KRTAP5-11Q6L8G4 156 aa3.14□□□□□ -1.91
SHANK1-203ENST00000391813 MUC5BQ9HC84 5762 aaPredicted RBP3.14□□□□□ -1.91
SHANK1-203ENST00000391813 KRTAP5-7Q6L8G8 165 aa3.03□□□□□ -1.93
SHANK1-203ENST00000391813 PHGR1C9JFL3 82 aa2.99□□□□□ -1.93
SHANK1-203ENST00000391813 KRTAP21-1Q3LI58 79 aa2.88□□□□□ -1.95
SHANK1-203ENST00000391813 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.88□□□□□ -1.95
SHANK1-203ENST00000391813 KRTAP21-2Q3LI59 83 aa2.83□□□□□ -1.96
SHANK1-203ENST00000391813 MUC16Q8WXI7 14507 aa1.8□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 11.1 ms