RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 MUC2Q02817 5179 aa3.91□□□□□ -1.78
PTPRF-203ENST00000372407 KRTAP19-6Q3LI70 58 aa3.89□□□□□ -1.79
PTPRF-203ENST00000372407 SPRR2DP22532 72 aa3.84□□□□□ -1.79
PTPRF-203ENST00000372407 KRTAP9-7A8MTY7 169 aa3.81□□□□□ -1.8
PTPRF-203ENST00000372407 LCE3DQ9BYE3 92 aa3.8□□□□□ -1.8
PTPRF-203ENST00000372407 LCE3EQ5T5B0 92 aa3.75□□□□□ -1.81
PTPRF-203ENST00000372407 KRTAP19-3Q7Z4W3 81 aa3.73□□□□□ -1.81
PTPRF-203ENST00000372407 MT1LQ93083 61 aa3.73□□□□□ -1.81
PTPRF-203ENST00000372407 KRTAP4-7Q9BYR0 210 aa3.7□□□□□ -1.82
PTPRF-203ENST00000372407 OBSCNQ5VST9 7968 aa3.69□□□□□ -1.82
PTPRF-203ENST00000372407 MT1EP04732 61 aa3.69□□□□□ -1.82
PTPRF-203ENST00000372407 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.61□□□□□ -1.83
PTPRF-203ENST00000372407 KRTAP6-3Q3LI67 103 aa3.57□□□□□ -1.84
PTPRF-203ENST00000372407 MT1MQ8N339 61 aa3.56□□□□□ -1.84
PTPRF-203ENST00000372407 USH2AO75445 5202 aa3.52□□□□□ -1.85
PTPRF-203ENST00000372407 KRTAP20-1Q3LI63 56 aa3.52□□□□□ -1.85
PTPRF-203ENST00000372407 MT3P25713 68 aa3.51□□□□□ -1.85
PTPRF-203ENST00000372407 SYNE2Q8WXH0 6885 aaKnown RBP3.5□□□□□ -1.85
PTPRF-203ENST00000372407 LOC100996750A0A140TA64 210 aa3.48□□□□□ -1.85
PTPRF-203ENST00000372407 KRTAP4-6Q9BYQ5 205 aa3.48□□□□□ -1.85
PTPRF-203ENST00000372407 KRTAP19-7Q3SYF9 63 aa3.45□□□□□ -1.86
PTPRF-203ENST00000372407 KRTAP4-3Q9BYR4 195 aa3.43□□□□□ -1.86
PTPRF-203ENST00000372407 PRM1P04553 51 aa3.43□□□□□ -1.86
PTPRF-203ENST00000372407 LCE1AQ5T7P2 110 aa3.4□□□□□ -1.86
PTPRF-203ENST00000372407 KRTAP2-3P0C7H8 128 aa3.37□□□□□ -1.87
PTPRF-203ENST00000372407 KRTAP2-4Q9BYR9 128 aa3.37□□□□□ -1.87
PTPRF-203ENST00000372407 MT4P47944 62 aa3.37□□□□□ -1.87
PTPRF-203ENST00000372407 FCGBPQ9Y6R7 5405 aaPredicted RBP3.35□□□□□ -1.87
PTPRF-203ENST00000372407 MT1AP04731 61 aa3.34□□□□□ -1.88
PTPRF-203ENST00000372407 KRTAP2-1Q9BYU5 128 aa3.34□□□□□ -1.88
PTPRF-203ENST00000372407 SSPOA2VEC9 5147 aa3.31□□□□□ -1.88
PTPRF-203ENST00000372407 MACF1Q9UPN3 7388 aaKnown RBP3.3□□□□□ -1.88
PTPRF-203ENST00000372407 LCE1BQ5T7P3 118 aa3.28□□□□□ -1.88
PTPRF-203ENST00000372407 LCE1DQ5T752 114 aa3.27□□□□□ -1.89
PTPRF-203ENST00000372407 KRTAP2-2Q9BYT5 123 aa3.27□□□□□ -1.89
PTPRF-203ENST00000372407 KRTAP4-9Q9BYQ8 210 aa3.24□□□□□ -1.89
PTPRF-203ENST00000372407 LCE5AQ5TCM9 118 aa3.24□□□□□ -1.89
PTPRF-203ENST00000372407 KRTAP5-9P26371 169 aa3.2□□□□□ -1.9
PTPRF-203ENST00000372407 KRTAP9-6A8MVA2 160 aa3.2□□□□□ -1.9
PTPRF-203ENST00000372407 KMT2DO14686 5537 aa3.18□□□□□ -1.9
PTPRF-203ENST00000372407 NEBP20929 6669 aa3.16□□□□□ -1.9
PTPRF-203ENST00000372407 LCE4AQ5TA78 99 aa3.14□□□□□ -1.91
PTPRF-203ENST00000372407 KRTAP6-1Q3LI64 71 aa3.11□□□□□ -1.91
PTPRF-203ENST00000372407 GPR98Q8WXG9 6306 aa3.1□□□□□ -1.91
PTPRF-203ENST00000372407 DSTQ03001 7570 aaKnown RBP3.09□□□□□ -1.91
PTPRF-203ENST00000372407 KRTAP6-2Q3LI66 62 aa3.05□□□□□ -1.92
PTPRF-203ENST00000372407 MUC12Q9UKN1 5478 aa3.04□□□□□ -1.92
PTPRF-203ENST00000372407 KRTAP9-4Q9BYQ2 154 aa3.03□□□□□ -1.92
PTPRF-203ENST00000372407 MDN1Q9NU22 5596 aa2.97□□□□□ -1.93
PTPRF-203ENST00000372407 MUC19Q7Z5P9 8384 aa2.93□□□□□ -1.94
PTPRF-203ENST00000372407 KRTAP9-9Q9BYP9 154 aa2.92□□□□□ -1.94
PTPRF-203ENST00000372407 KRTAP5-3Q6L8H2 238 aa2.84□□□□□ -1.95
PTPRF-203ENST00000372407 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
PTPRF-203ENST00000372407 LCE1EQ5T753 118 aa2.73□□□□□ -1.97
PTPRF-203ENST00000372407 LCE1FQ5T754 118 aa2.73□□□□□ -1.97
PTPRF-203ENST00000372407 KRTAP20-2Q3LI61 65 aa2.72□□□□□ -1.97
PTPRF-203ENST00000372407 KRTAP4-12Q9BQ66 201 aa2.72□□□□□ -1.97
PTPRF-203ENST00000372407 KRTAP4-11Q9BYQ6 195 aa2.71□□□□□ -1.98
PTPRF-203ENST00000372407 KRTAP4-2Q9BYR5 136 aa2.65□□□□□ -1.99
PTPRF-203ENST00000372407 KRTAP5-4Q6L8H1 288 aa2.62□□□□□ -1.99
PTPRF-203ENST00000372407 KRTAP5-5Q701N2 237 aaPredicted RBP2.53□□□□□ -2
PTPRF-203ENST00000372407 HMCN1Q96RW7 5635 aa2.4□□□□□ -2.03
PTPRF-203ENST00000372407 AHNAK2Q8IVF2 5795 aa2.39□□□□□ -2.03
PTPRF-203ENST00000372407 KRTAP5-7Q6L8G8 165 aa2.29□□□□□ -2.04
PTPRF-203ENST00000372407 KRTAP4-4Q9BYR3 166 aa2.28□□□□□ -2.04
PTPRF-203ENST00000372407 MUC5ACP98088 5654 aa2.26□□□□□ -2.05
PTPRF-203ENST00000372407 AHNAKQ09666 5890 aaKnown RBP2.23□□□□□ -2.05
PTPRF-203ENST00000372407 KRTAP5-10Q6L8G5 202 aa2.22□□□□□ -2.05
PTPRF-203ENST00000372407 KRTAP5-2Q701N4 177 aa2.2□□□□□ -2.06
PTPRF-203ENST00000372407 KRTAP5-8O75690 187 aa2.18□□□□□ -2.06
PTPRF-203ENST00000372407 MUC5BQ9HC84 5762 aaPredicted RBP1.96□□□□□ -2.1
PTPRF-203ENST00000372407 KRTAP5-1Q6L8H4 278 aa1.96□□□□□ -2.1
PTPRF-203ENST00000372407 KRTAP5-11Q6L8G4 156 aa1.81□□□□□ -2.12
PTPRF-203ENST00000372407 PHGR1C9JFL3 82 aa1.75□□□□□ -2.13
PTPRF-203ENST00000372407 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.68□□□□□ -2.14
PTPRF-203ENST00000372407 KRTAP21-2Q3LI59 83 aa1.66□□□□□ -2.14
PTPRF-203ENST00000372407 KRTAP21-1Q3LI58 79 aa1.48□□□□□ -2.17
PTPRF-203ENST00000372407 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 6 ms