RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 MT1LQ93083 61 aa4.61□□□□□ -1.67
COL6A1-201ENST00000361866 KRTAP19-4Q3LI73 84 aa4.57□□□□□ -1.68
COL6A1-201ENST00000361866 MT1EP04732 61 aa4.56□□□□□ -1.68
COL6A1-201ENST00000361866 LOC100996750A0A140TA64 210 aa4.56□□□□□ -1.68
COL6A1-201ENST00000361866 KRTAP4-3Q9BYR4 195 aa4.54□□□□□ -1.68
COL6A1-201ENST00000361866 KRTAP9-6A8MVA2 160 aa4.54□□□□□ -1.68
COL6A1-201ENST00000361866 SPRR2EP22531 72 aa4.54□□□□□ -1.68
COL6A1-201ENST00000361866 SPRR2BP35325 72 aa4.54□□□□□ -1.68
COL6A1-201ENST00000361866 SPRR2AP35326 72 aa4.54□□□□□ -1.68
COL6A1-201ENST00000361866 KRTAP19-7Q3SYF9 63 aa4.52□□□□□ -1.69
COL6A1-201ENST00000361866 KRTAP9-2Q9BYQ4 174 aa4.48□□□□□ -1.69
COL6A1-201ENST00000361866 KRTAP19-6Q3LI70 58 aa4.45□□□□□ -1.7
COL6A1-201ENST00000361866 KRTAP19-3Q7Z4W3 81 aa4.41□□□□□ -1.7
COL6A1-201ENST00000361866 SYNE2Q8WXH0 6885 aaKnown RBP4.4□□□□□ -1.7
COL6A1-201ENST00000361866 KRTAP2-3P0C7H8 128 aa4.37□□□□□ -1.71
COL6A1-201ENST00000361866 KRTAP2-4Q9BYR9 128 aa4.37□□□□□ -1.71
COL6A1-201ENST00000361866 KRTAP2-1Q9BYU5 128 aa4.37□□□□□ -1.71
COL6A1-201ENST00000361866 SPRR2DP22532 72 aa4.37□□□□□ -1.71
COL6A1-201ENST00000361866 LCE3DQ9BYE3 92 aa4.34□□□□□ -1.71
COL6A1-201ENST00000361866 MT1MQ8N339 61 aa4.34□□□□□ -1.71
COL6A1-201ENST00000361866 KRTAP4-9Q9BYQ8 210 aa4.29□□□□□ -1.72
COL6A1-201ENST00000361866 MUC12Q9UKN1 5478 aa4.29□□□□□ -1.72
COL6A1-201ENST00000361866 LCE3EQ5T5B0 92 aa4.27□□□□□ -1.73
COL6A1-201ENST00000361866 KRTAP9-6A0A140TA67 174 aa4.17□□□□□ -1.74
COL6A1-201ENST00000361866 PRM1P04553 51 aa4.15□□□□□ -1.75
COL6A1-201ENST00000361866 SSPOA2VEC9 5147 aa4.07□□□□□ -1.76
COL6A1-201ENST00000361866 MACF1Q9UPN3 7388 aaKnown RBP3.97□□□□□ -1.77
COL6A1-201ENST00000361866 KRTAP6-1Q3LI64 71 aa3.96□□□□□ -1.78
COL6A1-201ENST00000361866 KRTAP9-7A8MTY7 169 aa3.94□□□□□ -1.78
COL6A1-201ENST00000361866 MT1AP04731 61 aa3.92□□□□□ -1.78
COL6A1-201ENST00000361866 MT4P47944 62 aa3.92□□□□□ -1.78
COL6A1-201ENST00000361866 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.92□□□□□ -1.78
COL6A1-201ENST00000361866 LCE5AQ5TCM9 118 aa3.89□□□□□ -1.79
COL6A1-201ENST00000361866 KRTAP6-3Q3LI67 103 aa3.89□□□□□ -1.79
COL6A1-201ENST00000361866 MT3P25713 68 aa3.86□□□□□ -1.79
COL6A1-201ENST00000361866 LCE1AQ5T7P2 110 aa3.85□□□□□ -1.79
COL6A1-201ENST00000361866 KRTAP6-2Q3LI66 62 aa3.77□□□□□ -1.81
COL6A1-201ENST00000361866 MDN1Q9NU22 5596 aa3.7□□□□□ -1.82
COL6A1-201ENST00000361866 KRTAP20-1Q3LI63 56 aa3.69□□□□□ -1.82
COL6A1-201ENST00000361866 LCE1DQ5T752 114 aa3.65□□□□□ -1.83
COL6A1-201ENST00000361866 LCE1BQ5T7P3 118 aa3.63□□□□□ -1.83
COL6A1-201ENST00000361866 KRTAP9-4Q9BYQ2 154 aa3.62□□□□□ -1.83
COL6A1-201ENST00000361866 KRTAP5-9P26371 169 aa3.56□□□□□ -1.84
COL6A1-201ENST00000361866 KRTAP2-2Q9BYT5 123 aa3.56□□□□□ -1.84
COL6A1-201ENST00000361866 MUC19Q7Z5P9 8384 aa3.54□□□□□ -1.84
COL6A1-201ENST00000361866 LCE4AQ5TA78 99 aa3.49□□□□□ -1.85
COL6A1-201ENST00000361866 NEBP20929 6669 aa3.48□□□□□ -1.85
COL6A1-201ENST00000361866 KRTAP5-5Q701N2 237 aaPredicted RBP3.4□□□□□ -1.86
COL6A1-201ENST00000361866 KRTAP4-6Q9BYQ5 205 aa3.27□□□□□ -1.89
COL6A1-201ENST00000361866 LCE1EQ5T753 118 aa3.25□□□□□ -1.89
COL6A1-201ENST00000361866 GPR98Q8WXG9 6306 aa3.21□□□□□ -1.9
COL6A1-201ENST00000361866 KRTAP4-11Q9BYQ6 195 aa3.15□□□□□ -1.9
COL6A1-201ENST00000361866 KRTAP20-2Q3LI61 65 aa3.14□□□□□ -1.91
COL6A1-201ENST00000361866 MUC5ACP98088 5654 aa3.04□□□□□ -1.92
COL6A1-201ENST00000361866 KRTAP5-4Q6L8H1 288 aa2.91□□□□□ -1.94
COL6A1-201ENST00000361866 LCE1CQ5T751 118 aa2.9□□□□□ -1.94
COL6A1-201ENST00000361866 LCE1FQ5T754 118 aa2.9□□□□□ -1.94
COL6A1-201ENST00000361866 KRTAP9-9Q9BYP9 154 aa2.88□□□□□ -1.95
COL6A1-201ENST00000361866 HMCN1Q96RW7 5635 aa2.88□□□□□ -1.95
COL6A1-201ENST00000361866 KRTAP4-4Q9BYR3 166 aa2.82□□□□□ -1.96
COL6A1-201ENST00000361866 KRTAP4-12Q9BQ66 201 aa2.8□□□□□ -1.96
COL6A1-201ENST00000361866 KRTAP5-3Q6L8H2 238 aa2.69□□□□□ -1.98
COL6A1-201ENST00000361866 KRTAP4-2Q9BYR5 136 aa2.67□□□□□ -1.98
COL6A1-201ENST00000361866 AHNAK2Q8IVF2 5795 aa2.66□□□□□ -1.98
COL6A1-201ENST00000361866 KRTAP5-10Q6L8G5 202 aa2.57□□□□□ -2
COL6A1-201ENST00000361866 KRTAP5-2Q701N4 177 aa2.53□□□□□ -2
COL6A1-201ENST00000361866 KRTAP5-8O75690 187 aa2.46□□□□□ -2.02
COL6A1-201ENST00000361866 MUC5BQ9HC84 5762 aaPredicted RBP2.41□□□□□ -2.02
COL6A1-201ENST00000361866 KRTAP5-1Q6L8H4 278 aa2.26□□□□□ -2.05
COL6A1-201ENST00000361866 AHNAKQ09666 5890 aaKnown RBP2.24□□□□□ -2.05
COL6A1-201ENST00000361866 KRTAP21-2Q3LI59 83 aa2.23□□□□□ -2.05
COL6A1-201ENST00000361866 KRTAP5-11Q6L8G4 156 aa2.09□□□□□ -2.07
COL6A1-201ENST00000361866 KRTAP21-1Q3LI58 79 aa2.04□□□□□ -2.08
COL6A1-201ENST00000361866 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.96□□□□□ -2.09
COL6A1-201ENST00000361866 KRTAP5-7Q6L8G8 165 aa1.92□□□□□ -2.1
COL6A1-201ENST00000361866 PHGR1C9JFL3 82 aa1.9□□□□□ -2.11
COL6A1-201ENST00000361866 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 117.5 ms