RNA–Protein interactions for RNA: ENST00000361311.4

CLSTN1-201, Transcript of calsyntenin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLSTN1, Length 4,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-201ENST00000361311 MT1EP04732 61 aa5.16□□□□□ -1.58
CLSTN1-201ENST00000361311 KRTAP2-3P0C7H8 128 aa5.14□□□□□ -1.59
CLSTN1-201ENST00000361311 KRTAP2-4Q9BYR9 128 aa5.14□□□□□ -1.59
CLSTN1-201ENST00000361311 KRTAP2-1Q9BYU5 128 aa5.14□□□□□ -1.59
CLSTN1-201ENST00000361311 LCE3DQ9BYE3 92 aa5.09□□□□□ -1.59
CLSTN1-201ENST00000361311 SPRR2DP22532 72 aa5.09□□□□□ -1.6
CLSTN1-201ENST00000361311 KRTAP9-6A8MVA2 160 aa5.06□□□□□ -1.6
CLSTN1-201ENST00000361311 LCE3EQ5T5B0 92 aa5.05□□□□□ -1.6
CLSTN1-201ENST00000361311 KRTAP19-7Q3SYF9 63 aa5.05□□□□□ -1.6
CLSTN1-201ENST00000361311 LOC100996750A0A140TA64 210 aa5.01□□□□□ -1.61
CLSTN1-201ENST00000361311 KRTAP19-6Q3LI70 58 aa5.01□□□□□ -1.61
CLSTN1-201ENST00000361311 KRTAP19-3Q7Z4W3 81 aa5□□□□□ -1.61
CLSTN1-201ENST00000361311 LCE2DQ5TA82 110 aaPredicted RBP4.98□□□□□ -1.61
CLSTN1-201ENST00000361311 KRTAP4-3Q9BYR4 195 aa4.95□□□□□ -1.62
CLSTN1-201ENST00000361311 KRTAP9-6A0A140TA67 174 aa4.93□□□□□ -1.62
CLSTN1-201ENST00000361311 MT1MQ8N339 61 aa4.91□□□□□ -1.62
CLSTN1-201ENST00000361311 PRM1P04553 51 aa4.86□□□□□ -1.63
CLSTN1-201ENST00000361311 KRTAP4-9Q9BYQ8 210 aa4.74□□□□□ -1.65
CLSTN1-201ENST00000361311 OBSCNQ5VST9 7968 aa4.71□□□□□ -1.66
CLSTN1-201ENST00000361311 SYNE2Q8WXH0 6885 aaKnown RBP4.66□□□□□ -1.66
CLSTN1-201ENST00000361311 FCGBPQ9Y6R7 5405 aaPredicted RBP4.64□□□□□ -1.67
CLSTN1-201ENST00000361311 KRTAP9-7A8MTY7 169 aa4.63□□□□□ -1.67
CLSTN1-201ENST00000361311 KMT2DO14686 5537 aa4.62□□□□□ -1.67
CLSTN1-201ENST00000361311 MT1AP04731 61 aa4.54□□□□□ -1.68
CLSTN1-201ENST00000361311 MT4P47944 62 aa4.54□□□□□ -1.68
CLSTN1-201ENST00000361311 USH2AO75445 5202 aa4.53□□□□□ -1.68
CLSTN1-201ENST00000361311 DSTQ03001 7570 aaKnown RBP4.53□□□□□ -1.68
CLSTN1-201ENST00000361311 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.53□□□□□ -1.68
CLSTN1-201ENST00000361311 MT3P25713 68 aa4.5□□□□□ -1.69
CLSTN1-201ENST00000361311 KRTAP6-3Q3LI67 103 aa4.49□□□□□ -1.69
CLSTN1-201ENST00000361311 KRTAP6-1Q3LI64 71 aa4.44□□□□□ -1.7
CLSTN1-201ENST00000361311 KRTAP20-1Q3LI63 56 aa4.4□□□□□ -1.71
CLSTN1-201ENST00000361311 LCE1AQ5T7P2 110 aa4.38□□□□□ -1.71
CLSTN1-201ENST00000361311 KRTAP6-2Q3LI66 62 aa4.37□□□□□ -1.71
CLSTN1-201ENST00000361311 LCE5AQ5TCM9 118 aa4.35□□□□□ -1.71
CLSTN1-201ENST00000361311 MACF1Q9UPN3 7388 aaKnown RBP4.29□□□□□ -1.72
CLSTN1-201ENST00000361311 SSPOA2VEC9 5147 aa4.22□□□□□ -1.73
CLSTN1-201ENST00000361311 MUC12Q9UKN1 5478 aa4.2□□□□□ -1.74
CLSTN1-201ENST00000361311 KRTAP2-2Q9BYT5 123 aa4.18□□□□□ -1.74
CLSTN1-201ENST00000361311 KRTAP9-4Q9BYQ2 154 aa4.16□□□□□ -1.74
CLSTN1-201ENST00000361311 LCE1DQ5T752 114 aa4.13□□□□□ -1.75
CLSTN1-201ENST00000361311 LCE1BQ5T7P3 118 aa4.1□□□□□ -1.75
CLSTN1-201ENST00000361311 MDN1Q9NU22 5596 aa4.05□□□□□ -1.76
CLSTN1-201ENST00000361311 LCE4AQ5TA78 99 aa4.04□□□□□ -1.76
CLSTN1-201ENST00000361311 KRTAP5-9P26371 169 aa3.98□□□□□ -1.77
CLSTN1-201ENST00000361311 NEBP20929 6669 aa3.98□□□□□ -1.77
CLSTN1-201ENST00000361311 KRTAP5-5Q701N2 237 aaPredicted RBP3.9□□□□□ -1.79
CLSTN1-201ENST00000361311 GPR98Q8WXG9 6306 aa3.7□□□□□ -1.82
CLSTN1-201ENST00000361311 KRTAP4-6Q9BYQ5 205 aa3.65□□□□□ -1.83
CLSTN1-201ENST00000361311 MUC19Q7Z5P9 8384 aa3.63□□□□□ -1.83
CLSTN1-201ENST00000361311 KRTAP4-11Q9BYQ6 195 aa3.61□□□□□ -1.83
CLSTN1-201ENST00000361311 KRTAP20-2Q3LI61 65 aa3.53□□□□□ -1.84
CLSTN1-201ENST00000361311 LCE1EQ5T753 118 aa3.53□□□□□ -1.84
CLSTN1-201ENST00000361311 KRTAP9-9Q9BYP9 154 aa3.44□□□□□ -1.86
CLSTN1-201ENST00000361311 LCE1CQ5T751 118 aa3.41□□□□□ -1.86
CLSTN1-201ENST00000361311 LCE1FQ5T754 118 aa3.41□□□□□ -1.86
CLSTN1-201ENST00000361311 KRTAP5-4Q6L8H1 288 aa3.29□□□□□ -1.88
CLSTN1-201ENST00000361311 MUC5ACP98088 5654 aa3.18□□□□□ -1.9
CLSTN1-201ENST00000361311 HMCN1Q96RW7 5635 aa3.1□□□□□ -1.91
CLSTN1-201ENST00000361311 KRTAP5-3Q6L8H2 238 aa3.09□□□□□ -1.92
CLSTN1-201ENST00000361311 KRTAP4-4Q9BYR3 166 aa3.06□□□□□ -1.92
CLSTN1-201ENST00000361311 AHNAK2Q8IVF2 5795 aa3.02□□□□□ -1.93
CLSTN1-201ENST00000361311 KRTAP4-12Q9BQ66 201 aa3.01□□□□□ -1.93
CLSTN1-201ENST00000361311 KRTAP4-2Q9BYR5 136 aa3.01□□□□□ -1.93
CLSTN1-201ENST00000361311 KRTAP5-10Q6L8G5 202 aa2.94□□□□□ -1.94
CLSTN1-201ENST00000361311 KRTAP5-8O75690 187 aa2.8□□□□□ -1.96
CLSTN1-201ENST00000361311 KRTAP5-2Q701N4 177 aa2.76□□□□□ -1.97
CLSTN1-201ENST00000361311 AHNAKQ09666 5890 aaKnown RBP2.55□□□□□ -2
CLSTN1-201ENST00000361311 KRTAP5-1Q6L8H4 278 aa2.49□□□□□ -2.01
CLSTN1-201ENST00000361311 KRTAP21-2Q3LI59 83 aa2.48□□□□□ -2.01
CLSTN1-201ENST00000361311 KRTAP21-1Q3LI58 79 aa2.47□□□□□ -2.01
CLSTN1-201ENST00000361311 MUC5BQ9HC84 5762 aaPredicted RBP2.4□□□□□ -2.02
CLSTN1-201ENST00000361311 KRTAP5-11Q6L8G4 156 aa2.33□□□□□ -2.04
CLSTN1-201ENST00000361311 PHGR1C9JFL3 82 aa2.29□□□□□ -2.04
CLSTN1-201ENST00000361311 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.28□□□□□ -2.04
CLSTN1-201ENST00000361311 KRTAP5-7Q6L8G8 165 aa2.25□□□□□ -2.05
CLSTN1-201ENST00000361311 MUC16Q8WXI7 14507 aa1.41□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 119.5 ms