RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 KRTAP2-4Q9BYR9 128 aa6.96□□□□□ -1.29
CCDC88B-203ENST00000359902 KRTAP2-1Q9BYU5 128 aa6.96□□□□□ -1.29
CCDC88B-203ENST00000359902 KRTAP19-3Q7Z4W3 81 aa6.89□□□□□ -1.31
CCDC88B-203ENST00000359902 KRTAP4-3Q9BYR4 195 aa6.88□□□□□ -1.31
CCDC88B-203ENST00000359902 MT1GP13640 62 aa6.86□□□□□ -1.31
CCDC88B-203ENST00000359902 MT1MQ8N339 61 aa6.85□□□□□ -1.31
CCDC88B-203ENST00000359902 MUC12Q9UKN1 5478 aa6.85□□□□□ -1.31
CCDC88B-203ENST00000359902 LOC100996750A0A140TA64 210 aa6.8□□□□□ -1.32
CCDC88B-203ENST00000359902 SPRR2FQ96RM1 72 aa6.72□□□□□ -1.33
CCDC88B-203ENST00000359902 LCE5AQ5TCM9 118 aa6.7□□□□□ -1.34
CCDC88B-203ENST00000359902 KRTAP9-2Q9BYQ4 174 aa6.67□□□□□ -1.34
CCDC88B-203ENST00000359902 MACF1Q9UPN3 7388 aaKnown RBP6.62□□□□□ -1.35
CCDC88B-203ENST00000359902 CRCT1Q9UGL9 99 aa6.56□□□□□ -1.36
CCDC88B-203ENST00000359902 DSTQ03001 7570 aaKnown RBP6.45□□□□□ -1.38
CCDC88B-203ENST00000359902 SYNE2Q8WXH0 6885 aaKnown RBP6.37□□□□□ -1.39
CCDC88B-203ENST00000359902 KRTAP5-9P26371 169 aa6.37□□□□□ -1.39
CCDC88B-203ENST00000359902 LCE1AQ5T7P2 110 aa6.33□□□□□ -1.4
CCDC88B-203ENST00000359902 MDN1Q9NU22 5596 aa6.29□□□□□ -1.4
CCDC88B-203ENST00000359902 KRTAP9-6A0A140TA67 174 aa6.24□□□□□ -1.41
CCDC88B-203ENST00000359902 LCE3BQ5TA77 95 aa6.18□□□□□ -1.42
CCDC88B-203ENST00000359902 SPRR2EP22531 72 aa6.17□□□□□ -1.42
CCDC88B-203ENST00000359902 SPRR2BP35325 72 aa6.17□□□□□ -1.42
CCDC88B-203ENST00000359902 SPRR2AP35326 72 aa6.17□□□□□ -1.42
CCDC88B-203ENST00000359902 KRTAP6-1Q3LI64 71 aa6.17□□□□□ -1.42
CCDC88B-203ENST00000359902 MT1AP04731 61 aa6.13□□□□□ -1.43
CCDC88B-203ENST00000359902 KRTAP5-5Q701N2 237 aaPredicted RBP6.1□□□□□ -1.43
CCDC88B-203ENST00000359902 KRTAP12-4P60329 112 aa6.08□□□□□ -1.44
CCDC88B-203ENST00000359902 KRTAP4-9Q9BYQ8 210 aa6.02□□□□□ -1.45
CCDC88B-203ENST00000359902 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.98□□□□□ -1.45
CCDC88B-203ENST00000359902 SPRR2DP22532 72 aa5.92□□□□□ -1.46
CCDC88B-203ENST00000359902 KRTAP6-3Q3LI67 103 aa5.91□□□□□ -1.46
CCDC88B-203ENST00000359902 SYNE1Q8NF91 8797 aaKnown RBP5.9□□□□□ -1.46
CCDC88B-203ENST00000359902 LCE3DQ9BYE3 92 aa5.8□□□□□ -1.48
CCDC88B-203ENST00000359902 KRTAP9-4Q9BYQ2 154 aa5.8□□□□□ -1.48
CCDC88B-203ENST00000359902 LCE3EQ5T5B0 92 aa5.7□□□□□ -1.5
CCDC88B-203ENST00000359902 KRTAP9-7A8MTY7 169 aa5.65□□□□□ -1.5
CCDC88B-203ENST00000359902 KRTAP6-2Q3LI66 62 aa5.57□□□□□ -1.52
CCDC88B-203ENST00000359902 MT3P25713 68 aa5.52□□□□□ -1.53
CCDC88B-203ENST00000359902 KRTAP5-4Q6L8H1 288 aa5.48□□□□□ -1.53
CCDC88B-203ENST00000359902 NEBP20929 6669 aa5.47□□□□□ -1.53
CCDC88B-203ENST00000359902 PRM1P04553 51 aa5.39□□□□□ -1.55
CCDC88B-203ENST00000359902 KRTAP4-6Q9BYQ5 205 aa5.25□□□□□ -1.57
CCDC88B-203ENST00000359902 OBSCNQ5VST9 7968 aa5.2□□□□□ -1.58
CCDC88B-203ENST00000359902 MT4P47944 62 aa5.19□□□□□ -1.58
CCDC88B-203ENST00000359902 LCE4AQ5TA78 99 aa5.17□□□□□ -1.58
CCDC88B-203ENST00000359902 KRTAP20-2Q3LI61 65 aa5.12□□□□□ -1.59
CCDC88B-203ENST00000359902 KRTAP5-2Q701N4 177 aa5.08□□□□□ -1.6
CCDC88B-203ENST00000359902 KRTAP2-2Q9BYT5 123 aa5.02□□□□□ -1.61
CCDC88B-203ENST00000359902 HMCN1Q96RW7 5635 aa4.95□□□□□ -1.62
CCDC88B-203ENST00000359902 LCE1DQ5T752 114 aa4.95□□□□□ -1.62
CCDC88B-203ENST00000359902 KRTAP20-1Q3LI63 56 aa4.94□□□□□ -1.62
CCDC88B-203ENST00000359902 KRTAP5-3Q6L8H2 238 aa4.91□□□□□ -1.62
CCDC88B-203ENST00000359902 LCE1EQ5T753 118 aa4.6□□□□□ -1.67
CCDC88B-203ENST00000359902 MUC5ACP98088 5654 aa4.58□□□□□ -1.68
CCDC88B-203ENST00000359902 LCE1BQ5T7P3 118 aa4.45□□□□□ -1.7
CCDC88B-203ENST00000359902 KRTAP5-10Q6L8G5 202 aa4.36□□□□□ -1.71
CCDC88B-203ENST00000359902 KRTAP5-1Q6L8H4 278 aa4.34□□□□□ -1.72
CCDC88B-203ENST00000359902 KRTAP4-2Q9BYR5 136 aa4.34□□□□□ -1.72
CCDC88B-203ENST00000359902 LCE1CQ5T751 118 aa4.33□□□□□ -1.72
CCDC88B-203ENST00000359902 KRTAP4-11Q9BYQ6 195 aa4.28□□□□□ -1.72
CCDC88B-203ENST00000359902 KRTAP5-8O75690 187 aa4.11□□□□□ -1.75
CCDC88B-203ENST00000359902 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.08□□□□□ -1.76
CCDC88B-203ENST00000359902 AHNAK2Q8IVF2 5795 aa4.07□□□□□ -1.76
CCDC88B-203ENST00000359902 GPR98Q8WXG9 6306 aa4.05□□□□□ -1.76
CCDC88B-203ENST00000359902 KRTAP5-7Q6L8G8 165 aa4.05□□□□□ -1.76
CCDC88B-203ENST00000359902 KRTAP21-2Q3LI59 83 aa4.01□□□□□ -1.77
CCDC88B-203ENST00000359902 KRTAP5-11Q6L8G4 156 aa3.73□□□□□ -1.81
CCDC88B-203ENST00000359902 KRTAP4-4Q9BYR3 166 aa3.61□□□□□ -1.83
CCDC88B-203ENST00000359902 MUC5BQ9HC84 5762 aaPredicted RBP3.57□□□□□ -1.84
CCDC88B-203ENST00000359902 KRTAP9-9Q9BYP9 154 aa3.53□□□□□ -1.84
CCDC88B-203ENST00000359902 KRTAP4-12Q9BQ66 201 aa3.51□□□□□ -1.85
CCDC88B-203ENST00000359902 KRTAP21-1Q3LI58 79 aa3.43□□□□□ -1.86
CCDC88B-203ENST00000359902 PHGR1C9JFL3 82 aa3.23□□□□□ -1.89
CCDC88B-203ENST00000359902 MUC19Q7Z5P9 8384 aa3.23□□□□□ -1.89
CCDC88B-203ENST00000359902 AHNAKQ09666 5890 aaKnown RBP3.16□□□□□ -1.9
CCDC88B-203ENST00000359902 LCE1FQ5T754 118 aa3.13□□□□□ -1.91
CCDC88B-203ENST00000359902 MUC16Q8WXI7 14507 aa2.13□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 49.8 ms