RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 HMCN2Q8NDA2 5059 aa2.46□□□□□ -2.02
VPS13A-202ENST00000357409 LCE3DQ9BYE3 92 aa2.46□□□□□ -2.02
VPS13A-202ENST00000357409 LCE1DQ5T752 114 aa2.46□□□□□ -2.02
VPS13A-202ENST00000357409 KRTAP4-9Q9BYQ8 210 aa2.44□□□□□ -2.02
VPS13A-202ENST00000357409 KRTAP9-3Q9BYQ3 159 aa2.43□□□□□ -2.02
VPS13A-202ENST00000357409 KRTAP19-8Q3LI54 63 aa2.39□□□□□ -2.03
VPS13A-202ENST00000357409 LCE5AQ5TCM9 118 aa2.39□□□□□ -2.03
VPS13A-202ENST00000357409 LCE3EQ5T5B0 92 aa2.39□□□□□ -2.03
VPS13A-202ENST00000357409 KRTAP9-7A8MTY7 169 aa2.37□□□□□ -2.03
VPS13A-202ENST00000357409 HECTD4Q9Y4D8 3996 aa2.37□□□□□ -2.03
VPS13A-202ENST00000357409 KRTAP19-3Q7Z4W3 81 aa2.34□□□□□ -2.03
VPS13A-202ENST00000357409 PRM1P04553 51 aa2.33□□□□□ -2.04
VPS13A-202ENST00000357409 RNF213Q63HN8 5207 aa2.33□□□□□ -2.04
VPS13A-202ENST00000357409 KRTAP19-6Q3LI70 58 aa2.32□□□□□ -2.04
VPS13A-202ENST00000357409 FCGBPQ9Y6R7 5405 aaPredicted RBP2.27□□□□□ -2.05
VPS13A-202ENST00000357409 MT1LQ93083 61 aa2.27□□□□□ -2.05
VPS13A-202ENST00000357409 MT1EP04732 61 aa2.27□□□□□ -2.05
VPS13A-202ENST00000357409 MUC2Q02817 5179 aa2.27□□□□□ -2.05
VPS13A-202ENST00000357409 KMT2DO14686 5537 aa2.24□□□□□ -2.05
VPS13A-202ENST00000357409 KRTAP20-1Q3LI63 56 aa2.23□□□□□ -2.05
VPS13A-202ENST00000357409 MT1MQ8N339 61 aa2.22□□□□□ -2.05
VPS13A-202ENST00000357409 LCE1CQ5T751 118 aa2.21□□□□□ -2.06
VPS13A-202ENST00000357409 LCE1EQ5T753 118 aa2.21□□□□□ -2.06
VPS13A-202ENST00000357409 LCE1FQ5T754 118 aa2.21□□□□□ -2.06
VPS13A-202ENST00000357409 LCE1AQ5T7P2 110 aa2.21□□□□□ -2.06
VPS13A-202ENST00000357409 MT3P25713 68 aa2.2□□□□□ -2.06
VPS13A-202ENST00000357409 MUC19Q7Z5P9 8384 aa2.18□□□□□ -2.06
VPS13A-202ENST00000357409 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-202ENST00000357409 KRTAP19-2Q3LHN2 52 aa2.16□□□□□ -2.06
VPS13A-202ENST00000357409 FLGP20930 4061 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-202ENST00000357409 LCE2AQ5TA79 106 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-202ENST00000357409 KRTAP6-2Q3LI66 62 aa2.09□□□□□ -2.07
VPS13A-202ENST00000357409 USH2AO75445 5202 aa2.07□□□□□ -2.08
VPS13A-202ENST00000357409 LCE4AQ5TA78 99 aa2.06□□□□□ -2.08
VPS13A-202ENST00000357409 KRTAP6-1Q3LI64 71 aa2.06□□□□□ -2.08
VPS13A-202ENST00000357409 KRTAP19-7Q3SYF9 63 aa2.05□□□□□ -2.08
VPS13A-202ENST00000357409 KRTAP2-3P0C7H8 128 aa2.02□□□□□ -2.09
VPS13A-202ENST00000357409 KRTAP2-4Q9BYR9 128 aa2.02□□□□□ -2.09
VPS13A-202ENST00000357409 KRTAP2-1Q9BYU5 128 aa2.02□□□□□ -2.09
VPS13A-202ENST00000357409 SSPOA2VEC9 5147 aa2.01□□□□□ -2.09
VPS13A-202ENST00000357409 KRTAP4-6Q9BYQ5 205 aa2□□□□□ -2.09
VPS13A-202ENST00000357409 KRTAP2-2Q9BYT5 123 aa1.95□□□□□ -2.1
VPS13A-202ENST00000357409 MT1AP04731 61 aa1.94□□□□□ -2.1
VPS13A-202ENST00000357409 KRTAP19-4Q3LI73 84 aa1.94□□□□□ -2.1
VPS13A-202ENST00000357409 KRTAP9-4Q9BYQ2 154 aa1.94□□□□□ -2.1
VPS13A-202ENST00000357409 KRTAP9-6A8MVA2 160 aa1.93□□□□□ -2.1
VPS13A-202ENST00000357409 KRTAP4-12Q9BQ66 201 aa1.92□□□□□ -2.1
VPS13A-202ENST00000357409 KRTAP4-2Q9BYR5 136 aa1.92□□□□□ -2.1
VPS13A-202ENST00000357409 KRTAP6-3Q3LI67 103 aa1.91□□□□□ -2.1
VPS13A-202ENST00000357409 KRTAP4-4Q9BYR3 166 aa1.91□□□□□ -2.1
VPS13A-202ENST00000357409 KRTAP20-2Q3LI61 65 aa1.9□□□□□ -2.11
VPS13A-202ENST00000357409 KRTAP4-11Q9BYQ6 195 aa1.89□□□□□ -2.11
VPS13A-202ENST00000357409 MUC12Q9UKN1 5478 aa1.83□□□□□ -2.12
VPS13A-202ENST00000357409 NEBP20929 6669 aa1.8□□□□□ -2.12
VPS13A-202ENST00000357409 KRTAP9-9Q9BYP9 154 aa1.8□□□□□ -2.12
VPS13A-202ENST00000357409 MDN1Q9NU22 5596 aa1.62□□□□□ -2.15
VPS13A-202ENST00000357409 MUC5ACP98088 5654 aa1.51□□□□□ -2.17
VPS13A-202ENST00000357409 HMCN1Q96RW7 5635 aa1.48□□□□□ -2.17
VPS13A-202ENST00000357409 GPR98Q8WXG9 6306 aa1.48□□□□□ -2.17
VPS13A-202ENST00000357409 KRTAP5-3Q6L8H2 238 aa1.44□□□□□ -2.18
VPS13A-202ENST00000357409 KRTAP5-5Q701N2 237 aaPredicted RBP1.43□□□□□ -2.18
VPS13A-202ENST00000357409 KRTAP5-9P26371 169 aa1.43□□□□□ -2.18
VPS13A-202ENST00000357409 KRTAP5-8O75690 187 aa1.35□□□□□ -2.19
VPS13A-202ENST00000357409 PHGR1C9JFL3 82 aa1.34□□□□□ -2.19
VPS13A-202ENST00000357409 KRTAP5-4Q6L8H1 288 aa1.31□□□□□ -2.2
VPS13A-202ENST00000357409 MUC5BQ9HC84 5762 aaPredicted RBP1.22□□□□□ -2.21
VPS13A-202ENST00000357409 KRTAP5-2Q701N4 177 aa1.16□□□□□ -2.22
VPS13A-202ENST00000357409 AHNAKQ09666 5890 aaKnown RBP1.12□□□□□ -2.23
VPS13A-202ENST00000357409 KRTAP5-10Q6L8G5 202 aa1.04□□□□□ -2.24
VPS13A-202ENST00000357409 AHNAK2Q8IVF2 5795 aa1.02□□□□□ -2.25
VPS13A-202ENST00000357409 KRTAP5-1Q6L8H4 278 aa1.02□□□□□ -2.25
VPS13A-202ENST00000357409 KRTAP21-2Q3LI59 83 aa0.87□□□□□ -2.27
VPS13A-202ENST00000357409 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
VPS13A-202ENST00000357409 KRTAP21-1Q3LI58 79 aa0.83□□□□□ -2.28
VPS13A-202ENST00000357409 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.83□□□□□ -2.28
VPS13A-202ENST00000357409 KRTAP5-7Q6L8G8 165 aa0.81□□□□□ -2.28
VPS13A-202ENST00000357409 KRTAP5-11Q6L8G4 156 aa0.8□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 10 ms