RNA–Protein interactions for RNA: ENST00000355815.8

SREBF1-202, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SREBF1, Length 4,253 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-202ENST00000355815 KRTAP4-3Q9BYR4 195 aa4.74□□□□□ -1.65
SREBF1-202ENST00000355815 KRTAP19-7Q3SYF9 63 aa4.7□□□□□ -1.66
SREBF1-202ENST00000355815 MT1LQ93083 61 aa4.7□□□□□ -1.66
SREBF1-202ENST00000355815 LOC100996750A0A140TA64 210 aa4.69□□□□□ -1.66
SREBF1-202ENST00000355815 MT1EP04732 61 aa4.68□□□□□ -1.66
SREBF1-202ENST00000355815 MUC12Q9UKN1 5478 aa4.66□□□□□ -1.66
SREBF1-202ENST00000355815 KRTAP9-6A8MVA2 160 aa4.65□□□□□ -1.67
SREBF1-202ENST00000355815 SYNE2Q8WXH0 6885 aaKnown RBP4.59□□□□□ -1.67
SREBF1-202ENST00000355815 SPRR2EP22531 72 aa4.57□□□□□ -1.68
SREBF1-202ENST00000355815 SPRR2BP35325 72 aa4.57□□□□□ -1.68
SREBF1-202ENST00000355815 SPRR2AP35326 72 aa4.57□□□□□ -1.68
SREBF1-202ENST00000355815 SSPOA2VEC9 5147 aa4.56□□□□□ -1.68
SREBF1-202ENST00000355815 LCE3DQ9BYE3 92 aa4.51□□□□□ -1.69
SREBF1-202ENST00000355815 KRTAP19-3Q7Z4W3 81 aa4.5□□□□□ -1.69
SREBF1-202ENST00000355815 KRTAP19-6Q3LI70 58 aa4.49□□□□□ -1.69
SREBF1-202ENST00000355815 MT1MQ8N339 61 aa4.45□□□□□ -1.7
SREBF1-202ENST00000355815 LCE3EQ5T5B0 92 aa4.43□□□□□ -1.7
SREBF1-202ENST00000355815 SPRR2DP22532 72 aa4.43□□□□□ -1.7
SREBF1-202ENST00000355815 LCE2DQ5TA82 110 aaPredicted RBP4.38□□□□□ -1.71
SREBF1-202ENST00000355815 PRM1P04553 51 aa4.38□□□□□ -1.71
SREBF1-202ENST00000355815 KRTAP4-9Q9BYQ8 210 aa4.38□□□□□ -1.71
SREBF1-202ENST00000355815 MACF1Q9UPN3 7388 aaKnown RBP4.32□□□□□ -1.72
SREBF1-202ENST00000355815 KRTAP9-2Q9BYQ4 174 aa4.3□□□□□ -1.72
SREBF1-202ENST00000355815 KRTAP2-3P0C7H8 128 aa4.29□□□□□ -1.72
SREBF1-202ENST00000355815 KRTAP2-4Q9BYR9 128 aa4.29□□□□□ -1.72
SREBF1-202ENST00000355815 KRTAP2-1Q9BYU5 128 aa4.29□□□□□ -1.72
SREBF1-202ENST00000355815 MUC19Q7Z5P9 8384 aa4.14□□□□□ -1.75
SREBF1-202ENST00000355815 LCE5AQ5TCM9 118 aa4.09□□□□□ -1.75
SREBF1-202ENST00000355815 MDN1Q9NU22 5596 aa4.08□□□□□ -1.76
SREBF1-202ENST00000355815 KRTAP6-1Q3LI64 71 aa4.07□□□□□ -1.76
SREBF1-202ENST00000355815 KRTAP9-6A0A140TA67 174 aa4.07□□□□□ -1.76
SREBF1-202ENST00000355815 KRTAP9-7A8MTY7 169 aa4□□□□□ -1.77
SREBF1-202ENST00000355815 MT3P25713 68 aa3.98□□□□□ -1.77
SREBF1-202ENST00000355815 LCE1AQ5T7P2 110 aa3.98□□□□□ -1.77
SREBF1-202ENST00000355815 MT4P47944 62 aa3.96□□□□□ -1.78
SREBF1-202ENST00000355815 MT1AP04731 61 aa3.95□□□□□ -1.78
SREBF1-202ENST00000355815 KRTAP6-3Q3LI67 103 aa3.88□□□□□ -1.79
SREBF1-202ENST00000355815 KRTAP6-2Q3LI66 62 aa3.86□□□□□ -1.79
SREBF1-202ENST00000355815 LCE1BQ5T7P3 118 aa3.82□□□□□ -1.8
SREBF1-202ENST00000355815 LCE1EQ5T753 118 aa3.81□□□□□ -1.8
SREBF1-202ENST00000355815 LCE1DQ5T752 114 aa3.79□□□□□ -1.8
SREBF1-202ENST00000355815 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.76□□□□□ -1.81
SREBF1-202ENST00000355815 KRTAP20-1Q3LI63 56 aa3.73□□□□□ -1.81
SREBF1-202ENST00000355815 KRTAP9-4Q9BYQ2 154 aa3.69□□□□□ -1.82
SREBF1-202ENST00000355815 LCE4AQ5TA78 99 aa3.61□□□□□ -1.83
SREBF1-202ENST00000355815 KRTAP2-2Q9BYT5 123 aa3.6□□□□□ -1.83
SREBF1-202ENST00000355815 KRTAP5-9P26371 169 aa3.6□□□□□ -1.83
SREBF1-202ENST00000355815 KRTAP4-6Q9BYQ5 205 aa3.49□□□□□ -1.85
SREBF1-202ENST00000355815 KRTAP5-5Q701N2 237 aaPredicted RBP3.41□□□□□ -1.86
SREBF1-202ENST00000355815 NEBP20929 6669 aa3.35□□□□□ -1.87
SREBF1-202ENST00000355815 KRTAP4-11Q9BYQ6 195 aa3.34□□□□□ -1.88
SREBF1-202ENST00000355815 LCE1FQ5T754 118 aa3.24□□□□□ -1.89
SREBF1-202ENST00000355815 GPR98Q8WXG9 6306 aa3.24□□□□□ -1.89
SREBF1-202ENST00000355815 KRTAP20-2Q3LI61 65 aa3.21□□□□□ -1.9
SREBF1-202ENST00000355815 MUC5ACP98088 5654 aa3.17□□□□□ -1.9
SREBF1-202ENST00000355815 LCE1CQ5T751 118 aa3.1□□□□□ -1.91
SREBF1-202ENST00000355815 HMCN1Q96RW7 5635 aa3.09□□□□□ -1.92
SREBF1-202ENST00000355815 KRTAP9-9Q9BYP9 154 aa3.01□□□□□ -1.93
SREBF1-202ENST00000355815 KRTAP5-4Q6L8H1 288 aa2.98□□□□□ -1.93
SREBF1-202ENST00000355815 KRTAP4-4Q9BYR3 166 aa2.96□□□□□ -1.94
SREBF1-202ENST00000355815 KRTAP4-12Q9BQ66 201 aa2.78□□□□□ -1.96
SREBF1-202ENST00000355815 KRTAP4-2Q9BYR5 136 aa2.78□□□□□ -1.96
SREBF1-202ENST00000355815 KRTAP5-3Q6L8H2 238 aa2.71□□□□□ -1.97
SREBF1-202ENST00000355815 KRTAP5-2Q701N4 177 aa2.71□□□□□ -1.97
SREBF1-202ENST00000355815 AHNAK2Q8IVF2 5795 aa2.62□□□□□ -1.99
SREBF1-202ENST00000355815 KRTAP5-10Q6L8G5 202 aa2.61□□□□□ -1.99
SREBF1-202ENST00000355815 MUC5BQ9HC84 5762 aaPredicted RBP2.59□□□□□ -2
SREBF1-202ENST00000355815 KRTAP5-8O75690 187 aa2.48□□□□□ -2.01
SREBF1-202ENST00000355815 KRTAP5-1Q6L8H4 278 aa2.46□□□□□ -2.02
SREBF1-202ENST00000355815 KRTAP21-2Q3LI59 83 aa2.35□□□□□ -2.03
SREBF1-202ENST00000355815 KRTAP5-7Q6L8G8 165 aa2.28□□□□□ -2.04
SREBF1-202ENST00000355815 AHNAKQ09666 5890 aaKnown RBP2.16□□□□□ -2.06
SREBF1-202ENST00000355815 KRTAP5-11Q6L8G4 156 aa2.13□□□□□ -2.07
SREBF1-202ENST00000355815 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
SREBF1-202ENST00000355815 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.1□□□□□ -2.07
SREBF1-202ENST00000355815 PHGR1C9JFL3 82 aa1.92□□□□□ -2.1
SREBF1-202ENST00000355815 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 80.9 ms