RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 LOC100996750A0A140TA64 210 aa4.14□□□□□ -1.75
SNRNP48-201ENST00000342415 KRTAP4-3Q9BYR4 195 aa4.14□□□□□ -1.75
SNRNP48-201ENST00000342415 KRTAP9-6A8MVA2 160 aa4.12□□□□□ -1.75
SNRNP48-201ENST00000342415 MT1EP04732 61 aa4.1□□□□□ -1.75
SNRNP48-201ENST00000342415 KRTAP19-7Q3SYF9 63 aa4.1□□□□□ -1.75
SNRNP48-201ENST00000342415 LCE2AQ5TA79 106 aaPredicted RBP4.02□□□□□ -1.77
SNRNP48-201ENST00000342415 SYNE2Q8WXH0 6885 aaKnown RBP3.99□□□□□ -1.77
SNRNP48-201ENST00000342415 KRTAP19-4Q3LI73 84 aa3.98□□□□□ -1.77
SNRNP48-201ENST00000342415 MUC12Q9UKN1 5478 aa3.96□□□□□ -1.78
SNRNP48-201ENST00000342415 KRTAP19-3Q7Z4W3 81 aa3.95□□□□□ -1.78
SNRNP48-201ENST00000342415 SPRR2EP22531 72 aa3.94□□□□□ -1.78
SNRNP48-201ENST00000342415 SPRR2BP35325 72 aa3.94□□□□□ -1.78
SNRNP48-201ENST00000342415 SPRR2AP35326 72 aa3.94□□□□□ -1.78
SNRNP48-201ENST00000342415 MT1MQ8N339 61 aa3.9□□□□□ -1.79
SNRNP48-201ENST00000342415 KRTAP2-3P0C7H8 128 aa3.89□□□□□ -1.79
SNRNP48-201ENST00000342415 KRTAP2-4Q9BYR9 128 aa3.89□□□□□ -1.79
SNRNP48-201ENST00000342415 KRTAP2-1Q9BYU5 128 aa3.89□□□□□ -1.79
SNRNP48-201ENST00000342415 KRTAP4-9Q9BYQ8 210 aa3.89□□□□□ -1.79
SNRNP48-201ENST00000342415 KRTAP19-6Q3LI70 58 aa3.84□□□□□ -1.79
SNRNP48-201ENST00000342415 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.79
SNRNP48-201ENST00000342415 SPRR2DP22532 72 aa3.76□□□□□ -1.81
SNRNP48-201ENST00000342415 LCE3EQ5T5B0 92 aa3.76□□□□□ -1.81
SNRNP48-201ENST00000342415 SSPOA2VEC9 5147 aa3.76□□□□□ -1.81
SNRNP48-201ENST00000342415 KRTAP9-2Q9BYQ4 174 aa3.68□□□□□ -1.82
SNRNP48-201ENST00000342415 PRM1P04553 51 aa3.67□□□□□ -1.82
SNRNP48-201ENST00000342415 MACF1Q9UPN3 7388 aaKnown RBP3.6□□□□□ -1.83
SNRNP48-201ENST00000342415 KRTAP6-1Q3LI64 71 aa3.58□□□□□ -1.84
SNRNP48-201ENST00000342415 LCE5AQ5TCM9 118 aa3.52□□□□□ -1.85
SNRNP48-201ENST00000342415 MT4P47944 62 aa3.51□□□□□ -1.85
SNRNP48-201ENST00000342415 KRTAP9-7A8MTY7 169 aa3.5□□□□□ -1.85
SNRNP48-201ENST00000342415 MT1AP04731 61 aa3.49□□□□□ -1.85
SNRNP48-201ENST00000342415 MT3P25713 68 aa3.42□□□□□ -1.86
SNRNP48-201ENST00000342415 MDN1Q9NU22 5596 aa3.4□□□□□ -1.87
SNRNP48-201ENST00000342415 LCE1AQ5T7P2 110 aa3.4□□□□□ -1.87
SNRNP48-201ENST00000342415 KRTAP6-2Q3LI66 62 aa3.36□□□□□ -1.87
SNRNP48-201ENST00000342415 KRTAP4-6Q9BYQ5 205 aa3.3□□□□□ -1.88
SNRNP48-201ENST00000342415 LCE1DQ5T752 114 aa3.3□□□□□ -1.88
SNRNP48-201ENST00000342415 LCE1BQ5T7P3 118 aa3.27□□□□□ -1.89
SNRNP48-201ENST00000342415 KRTAP9-6A0A140TA67 174 aa3.26□□□□□ -1.89
SNRNP48-201ENST00000342415 KRTAP9-4Q9BYQ2 154 aa3.24□□□□□ -1.89
SNRNP48-201ENST00000342415 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.21□□□□□ -1.9
SNRNP48-201ENST00000342415 MUC19Q7Z5P9 8384 aa3.19□□□□□ -1.9
SNRNP48-201ENST00000342415 KRTAP6-3Q3LI67 103 aa3.13□□□□□ -1.91
SNRNP48-201ENST00000342415 KRTAP5-5Q701N2 237 aaPredicted RBP3.07□□□□□ -1.92
SNRNP48-201ENST00000342415 KRTAP5-9P26371 169 aa3.01□□□□□ -1.93
SNRNP48-201ENST00000342415 KRTAP2-2Q9BYT5 123 aa3.01□□□□□ -1.93
SNRNP48-201ENST00000342415 NEBP20929 6669 aa2.94□□□□□ -1.94
SNRNP48-201ENST00000342415 KRTAP20-1Q3LI63 56 aa2.91□□□□□ -1.94
SNRNP48-201ENST00000342415 KRTAP9-9Q9BYP9 154 aa2.9□□□□□ -1.95
SNRNP48-201ENST00000342415 LCE4AQ5TA78 99 aa2.86□□□□□ -1.95
SNRNP48-201ENST00000342415 KRTAP4-12Q9BQ66 201 aa2.82□□□□□ -1.96
SNRNP48-201ENST00000342415 KRTAP4-11Q9BYQ6 195 aa2.82□□□□□ -1.96
SNRNP48-201ENST00000342415 MUC5ACP98088 5654 aa2.78□□□□□ -1.96
SNRNP48-201ENST00000342415 KRTAP20-2Q3LI61 65 aa2.76□□□□□ -1.97
SNRNP48-201ENST00000342415 HMCN1Q96RW7 5635 aa2.64□□□□□ -1.99
SNRNP48-201ENST00000342415 LCE1EQ5T753 118 aa2.62□□□□□ -1.99
SNRNP48-201ENST00000342415 KRTAP4-2Q9BYR5 136 aa2.59□□□□□ -1.99
SNRNP48-201ENST00000342415 GPR98Q8WXG9 6306 aa2.57□□□□□ -2
SNRNP48-201ENST00000342415 KRTAP4-4Q9BYR3 166 aa2.56□□□□□ -2
SNRNP48-201ENST00000342415 LCE1CQ5T751 118 aa2.55□□□□□ -2
SNRNP48-201ENST00000342415 LCE1FQ5T754 118 aa2.55□□□□□ -2
SNRNP48-201ENST00000342415 KRTAP5-4Q6L8H1 288 aa2.48□□□□□ -2.01
SNRNP48-201ENST00000342415 KRTAP5-3Q6L8H2 238 aa2.41□□□□□ -2.02
SNRNP48-201ENST00000342415 KRTAP5-10Q6L8G5 202 aa2.32□□□□□ -2.04
SNRNP48-201ENST00000342415 AHNAK2Q8IVF2 5795 aa2.3□□□□□ -2.04
SNRNP48-201ENST00000342415 KRTAP5-2Q701N4 177 aa2.26□□□□□ -2.05
SNRNP48-201ENST00000342415 MUC5BQ9HC84 5762 aaPredicted RBP2.16□□□□□ -2.06
SNRNP48-201ENST00000342415 KRTAP5-8O75690 187 aa2.12□□□□□ -2.07
SNRNP48-201ENST00000342415 KRTAP5-1Q6L8H4 278 aa2.03□□□□□ -2.08
SNRNP48-201ENST00000342415 KRTAP21-2Q3LI59 83 aa2.03□□□□□ -2.08
SNRNP48-201ENST00000342415 AHNAKQ09666 5890 aaKnown RBP1.95□□□□□ -2.1
SNRNP48-201ENST00000342415 KRTAP5-7Q6L8G8 165 aa1.83□□□□□ -2.12
SNRNP48-201ENST00000342415 KRTAP5-11Q6L8G4 156 aa1.82□□□□□ -2.12
SNRNP48-201ENST00000342415 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
SNRNP48-201ENST00000342415 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.77□□□□□ -2.13
SNRNP48-201ENST00000342415 PHGR1C9JFL3 82 aa1.58□□□□□ -2.16
SNRNP48-201ENST00000342415 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 116.3 ms