RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 LCE3DQ9BYE3 92 aa4.51□□□□□ -1.69
RTN4-202ENST00000337526 MT1LQ93083 61 aa4.51□□□□□ -1.69
RTN4-202ENST00000337526 KRTAP19-3Q7Z4W3 81 aa4.48□□□□□ -1.69
RTN4-202ENST00000337526 MUC2Q02817 5179 aa4.46□□□□□ -1.69
RTN4-202ENST00000337526 MT1EP04732 61 aa4.46□□□□□ -1.7
RTN4-202ENST00000337526 KRTAP19-6Q3LI70 58 aa4.46□□□□□ -1.7
RTN4-202ENST00000337526 LCE3EQ5T5B0 92 aa4.44□□□□□ -1.7
RTN4-202ENST00000337526 SPRR2DP22532 72 aa4.44□□□□□ -1.7
RTN4-202ENST00000337526 MT1MQ8N339 61 aa4.3□□□□□ -1.72
RTN4-202ENST00000337526 LOC100996750A0A140TA64 210 aa4.25□□□□□ -1.73
RTN4-202ENST00000337526 KRTAP9-7A8MTY7 169 aa4.23□□□□□ -1.73
RTN4-202ENST00000337526 KRTAP4-3Q9BYR4 195 aa4.23□□□□□ -1.73
RTN4-202ENST00000337526 KRTAP19-7Q3SYF9 63 aa4.23□□□□□ -1.73
RTN4-202ENST00000337526 OBSCNQ5VST9 7968 aa4.15□□□□□ -1.75
RTN4-202ENST00000337526 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.14□□□□□ -1.75
RTN4-202ENST00000337526 MT3P25713 68 aa4.14□□□□□ -1.75
RTN4-202ENST00000337526 PRM1P04553 51 aa4.11□□□□□ -1.75
RTN4-202ENST00000337526 KRTAP6-3Q3LI67 103 aa4.1□□□□□ -1.75
RTN4-202ENST00000337526 KRTAP2-3P0C7H8 128 aa4.08□□□□□ -1.76
RTN4-202ENST00000337526 KRTAP2-4Q9BYR9 128 aa4.08□□□□□ -1.76
RTN4-202ENST00000337526 KRTAP2-1Q9BYU5 128 aa4.08□□□□□ -1.76
RTN4-202ENST00000337526 SYNE2Q8WXH0 6885 aaKnown RBP4.02□□□□□ -1.77
RTN4-202ENST00000337526 USH2AO75445 5202 aa4.01□□□□□ -1.77
RTN4-202ENST00000337526 MT1AP04731 61 aa3.99□□□□□ -1.77
RTN4-202ENST00000337526 KRTAP20-1Q3LI63 56 aa3.99□□□□□ -1.77
RTN4-202ENST00000337526 KRTAP9-6A8MVA2 160 aa3.99□□□□□ -1.77
RTN4-202ENST00000337526 KRTAP4-9Q9BYQ8 210 aa3.98□□□□□ -1.77
RTN4-202ENST00000337526 MT4P47944 62 aa3.98□□□□□ -1.77
RTN4-202ENST00000337526 FCGBPQ9Y6R7 5405 aaPredicted RBP3.96□□□□□ -1.77
RTN4-202ENST00000337526 LCE1AQ5T7P2 110 aa3.92□□□□□ -1.78
RTN4-202ENST00000337526 LCE1DQ5T752 114 aa3.87□□□□□ -1.79
RTN4-202ENST00000337526 LCE1BQ5T7P3 118 aa3.87□□□□□ -1.79
RTN4-202ENST00000337526 DSTQ03001 7570 aaKnown RBP3.85□□□□□ -1.79
RTN4-202ENST00000337526 KRTAP6-1Q3LI64 71 aa3.79□□□□□ -1.8
RTN4-202ENST00000337526 KRTAP2-2Q9BYT5 123 aa3.77□□□□□ -1.81
RTN4-202ENST00000337526 LCE5AQ5TCM9 118 aa3.77□□□□□ -1.81
RTN4-202ENST00000337526 SSPOA2VEC9 5147 aa3.76□□□□□ -1.81
RTN4-202ENST00000337526 KMT2DO14686 5537 aa3.75□□□□□ -1.81
RTN4-202ENST00000337526 MACF1Q9UPN3 7388 aaKnown RBP3.75□□□□□ -1.81
RTN4-202ENST00000337526 KRTAP6-2Q3LI66 62 aa3.68□□□□□ -1.82
RTN4-202ENST00000337526 KRTAP9-4Q9BYQ2 154 aa3.65□□□□□ -1.83
RTN4-202ENST00000337526 KRTAP5-9P26371 169 aa3.64□□□□□ -1.83
RTN4-202ENST00000337526 LCE4AQ5TA78 99 aa3.61□□□□□ -1.83
RTN4-202ENST00000337526 NEBP20929 6669 aa3.57□□□□□ -1.84
RTN4-202ENST00000337526 MUC12Q9UKN1 5478 aa3.49□□□□□ -1.85
RTN4-202ENST00000337526 MDN1Q9NU22 5596 aa3.46□□□□□ -1.86
RTN4-202ENST00000337526 MUC19Q7Z5P9 8384 aa3.4□□□□□ -1.87
RTN4-202ENST00000337526 GPR98Q8WXG9 6306 aa3.23□□□□□ -1.89
RTN4-202ENST00000337526 LCE1CQ5T751 118 aa3.17□□□□□ -1.9
RTN4-202ENST00000337526 LCE1EQ5T753 118 aa3.17□□□□□ -1.9
RTN4-202ENST00000337526 LCE1FQ5T754 118 aa3.17□□□□□ -1.9
RTN4-202ENST00000337526 KRTAP4-6Q9BYQ5 205 aa3.16□□□□□ -1.9
RTN4-202ENST00000337526 KRTAP20-2Q3LI61 65 aa3.12□□□□□ -1.91
RTN4-202ENST00000337526 KRTAP4-11Q9BYQ6 195 aa3.05□□□□□ -1.92
RTN4-202ENST00000337526 KRTAP9-9Q9BYP9 154 aa3.03□□□□□ -1.93
RTN4-202ENST00000337526 KRTAP5-4Q6L8H1 288 aa2.98□□□□□ -1.93
RTN4-202ENST00000337526 KRTAP5-5Q701N2 237 aaPredicted RBP2.95□□□□□ -1.94
RTN4-202ENST00000337526 KRTAP5-3Q6L8H2 238 aa2.81□□□□□ -1.96
RTN4-202ENST00000337526 KRTAP4-4Q9BYR3 166 aa2.76□□□□□ -1.97
RTN4-202ENST00000337526 MUC5ACP98088 5654 aa2.75□□□□□ -1.97
RTN4-202ENST00000337526 HMCN1Q96RW7 5635 aa2.71□□□□□ -1.98
RTN4-202ENST00000337526 AHNAK2Q8IVF2 5795 aa2.68□□□□□ -1.98
RTN4-202ENST00000337526 KRTAP4-12Q9BQ66 201 aa2.68□□□□□ -1.98
RTN4-202ENST00000337526 KRTAP4-2Q9BYR5 136 aa2.68□□□□□ -1.98
RTN4-202ENST00000337526 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
RTN4-202ENST00000337526 KRTAP5-2Q701N4 177 aa2.49□□□□□ -2.01
RTN4-202ENST00000337526 KRTAP5-10Q6L8G5 202 aa2.35□□□□□ -2.03
RTN4-202ENST00000337526 AHNAKQ09666 5890 aaKnown RBP2.3□□□□□ -2.04
RTN4-202ENST00000337526 KRTAP5-7Q6L8G8 165 aa2.25□□□□□ -2.05
RTN4-202ENST00000337526 KRTAP5-1Q6L8H4 278 aa2.21□□□□□ -2.06
RTN4-202ENST00000337526 MUC5BQ9HC84 5762 aaPredicted RBP2.11□□□□□ -2.07
RTN4-202ENST00000337526 KRTAP5-11Q6L8G4 156 aa2.08□□□□□ -2.08
RTN4-202ENST00000337526 PHGR1C9JFL3 82 aa2.02□□□□□ -2.09
RTN4-202ENST00000337526 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
RTN4-202ENST00000337526 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.91□□□□□ -2.1
RTN4-202ENST00000337526 KRTAP21-1Q3LI58 79 aa1.83□□□□□ -2.12
RTN4-202ENST00000337526 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 9 ms