RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 LOC100996750A0A140TA64 210 aa4.29□□□□□ -1.72
COL2A1-201ENST00000337299 MT1LQ93083 61 aa4.28□□□□□ -1.72
COL2A1-201ENST00000337299 KRTAP19-4Q3LI73 84 aa4.25□□□□□ -1.73
COL2A1-201ENST00000337299 KRTAP4-3Q9BYR4 195 aa4.24□□□□□ -1.73
COL2A1-201ENST00000337299 KRTAP2-3P0C7H8 128 aa4.24□□□□□ -1.73
COL2A1-201ENST00000337299 KRTAP2-4Q9BYR9 128 aa4.24□□□□□ -1.73
COL2A1-201ENST00000337299 KRTAP2-1Q9BYU5 128 aa4.24□□□□□ -1.73
COL2A1-201ENST00000337299 SPRR2EP22531 72 aa4.21□□□□□ -1.74
COL2A1-201ENST00000337299 SPRR2BP35325 72 aa4.21□□□□□ -1.74
COL2A1-201ENST00000337299 SPRR2AP35326 72 aa4.21□□□□□ -1.74
COL2A1-201ENST00000337299 LCE3DQ9BYE3 92 aa4.21□□□□□ -1.74
COL2A1-201ENST00000337299 MT1EP04732 61 aa4.2□□□□□ -1.74
COL2A1-201ENST00000337299 KRTAP19-7Q3SYF9 63 aa4.15□□□□□ -1.74
COL2A1-201ENST00000337299 LCE3EQ5T5B0 92 aa4.15□□□□□ -1.74
COL2A1-201ENST00000337299 SYNE2Q8WXH0 6885 aaKnown RBP4.15□□□□□ -1.75
COL2A1-201ENST00000337299 PRM1P04553 51 aa4.14□□□□□ -1.75
COL2A1-201ENST00000337299 KRTAP4-9Q9BYQ8 210 aa4.14□□□□□ -1.75
COL2A1-201ENST00000337299 KRTAP19-6Q3LI70 58 aa4.13□□□□□ -1.75
COL2A1-201ENST00000337299 KRTAP9-2Q9BYQ4 174 aa4.13□□□□□ -1.75
COL2A1-201ENST00000337299 KRTAP19-3Q7Z4W3 81 aa4.1□□□□□ -1.75
COL2A1-201ENST00000337299 SPRR2DP22532 72 aa4.03□□□□□ -1.76
COL2A1-201ENST00000337299 MUC12Q9UKN1 5478 aa4.03□□□□□ -1.76
COL2A1-201ENST00000337299 MT1MQ8N339 61 aa3.99□□□□□ -1.77
COL2A1-201ENST00000337299 SSPOA2VEC9 5147 aa3.97□□□□□ -1.77
COL2A1-201ENST00000337299 LCE2DQ5TA82 110 aaPredicted RBP3.92□□□□□ -1.78
COL2A1-201ENST00000337299 MACF1Q9UPN3 7388 aaKnown RBP3.92□□□□□ -1.78
COL2A1-201ENST00000337299 KRTAP9-7A8MTY7 169 aa3.86□□□□□ -1.79
COL2A1-201ENST00000337299 KRTAP9-6A0A140TA67 174 aa3.74□□□□□ -1.81
COL2A1-201ENST00000337299 MT4P47944 62 aa3.72□□□□□ -1.81
COL2A1-201ENST00000337299 KRTAP6-1Q3LI64 71 aa3.69□□□□□ -1.82
COL2A1-201ENST00000337299 KRTAP6-2Q3LI66 62 aa3.69□□□□□ -1.82
COL2A1-201ENST00000337299 LCE5AQ5TCM9 118 aa3.66□□□□□ -1.82
COL2A1-201ENST00000337299 MT1AP04731 61 aa3.64□□□□□ -1.83
COL2A1-201ENST00000337299 LCE1AQ5T7P2 110 aa3.64□□□□□ -1.83
COL2A1-201ENST00000337299 MT3P25713 68 aa3.6□□□□□ -1.83
COL2A1-201ENST00000337299 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.59□□□□□ -1.83
COL2A1-201ENST00000337299 MDN1Q9NU22 5596 aa3.59□□□□□ -1.84
COL2A1-201ENST00000337299 MUC19Q7Z5P9 8384 aa3.53□□□□□ -1.84
COL2A1-201ENST00000337299 KRTAP6-3Q3LI67 103 aa3.5□□□□□ -1.85
COL2A1-201ENST00000337299 KRTAP2-2Q9BYT5 123 aa3.42□□□□□ -1.86
COL2A1-201ENST00000337299 LCE1DQ5T752 114 aa3.41□□□□□ -1.86
COL2A1-201ENST00000337299 LCE1BQ5T7P3 118 aa3.4□□□□□ -1.87
COL2A1-201ENST00000337299 KRTAP9-4Q9BYQ2 154 aa3.33□□□□□ -1.88
COL2A1-201ENST00000337299 KRTAP5-5Q701N2 237 aaPredicted RBP3.32□□□□□ -1.88
COL2A1-201ENST00000337299 NEBP20929 6669 aa3.31□□□□□ -1.88
COL2A1-201ENST00000337299 KRTAP5-9P26371 169 aa3.3□□□□□ -1.88
COL2A1-201ENST00000337299 KRTAP20-1Q3LI63 56 aa3.28□□□□□ -1.88
COL2A1-201ENST00000337299 LCE1EQ5T753 118 aa3.27□□□□□ -1.89
COL2A1-201ENST00000337299 KRTAP4-6Q9BYQ5 205 aa3.16□□□□□ -1.9
COL2A1-201ENST00000337299 KRTAP4-11Q9BYQ6 195 aa3.14□□□□□ -1.91
COL2A1-201ENST00000337299 LCE4AQ5TA78 99 aa3.13□□□□□ -1.91
COL2A1-201ENST00000337299 KRTAP20-2Q3LI61 65 aa2.94□□□□□ -1.94
COL2A1-201ENST00000337299 MUC5ACP98088 5654 aa2.91□□□□□ -1.94
COL2A1-201ENST00000337299 GPR98Q8WXG9 6306 aa2.9□□□□□ -1.94
COL2A1-201ENST00000337299 HMCN1Q96RW7 5635 aa2.81□□□□□ -1.96
COL2A1-201ENST00000337299 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
COL2A1-201ENST00000337299 LCE1CQ5T751 118 aa2.68□□□□□ -1.98
COL2A1-201ENST00000337299 LCE1FQ5T754 118 aa2.68□□□□□ -1.98
COL2A1-201ENST00000337299 KRTAP5-4Q6L8H1 288 aa2.65□□□□□ -1.98
COL2A1-201ENST00000337299 KRTAP9-9Q9BYP9 154 aa2.59□□□□□ -1.99
COL2A1-201ENST00000337299 KRTAP4-12Q9BQ66 201 aa2.57□□□□□ -2
COL2A1-201ENST00000337299 KRTAP4-2Q9BYR5 136 aa2.57□□□□□ -2
COL2A1-201ENST00000337299 AHNAK2Q8IVF2 5795 aa2.52□□□□□ -2.01
COL2A1-201ENST00000337299 KRTAP5-3Q6L8H2 238 aa2.47□□□□□ -2.01
COL2A1-201ENST00000337299 KRTAP5-10Q6L8G5 202 aa2.44□□□□□ -2.02
COL2A1-201ENST00000337299 KRTAP5-2Q701N4 177 aa2.37□□□□□ -2.03
COL2A1-201ENST00000337299 KRTAP5-8O75690 187 aa2.32□□□□□ -2.04
COL2A1-201ENST00000337299 MUC5BQ9HC84 5762 aaPredicted RBP2.32□□□□□ -2.04
COL2A1-201ENST00000337299 KRTAP5-1Q6L8H4 278 aa2.16□□□□□ -2.06
COL2A1-201ENST00000337299 AHNAKQ09666 5890 aaKnown RBP2.12□□□□□ -2.07
COL2A1-201ENST00000337299 KRTAP21-1Q3LI58 79 aa2.04□□□□□ -2.08
COL2A1-201ENST00000337299 KRTAP21-2Q3LI59 83 aa2.03□□□□□ -2.08
COL2A1-201ENST00000337299 KRTAP5-11Q6L8G4 156 aa1.93□□□□□ -2.1
COL2A1-201ENST00000337299 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.81□□□□□ -2.12
COL2A1-201ENST00000337299 PHGR1C9JFL3 82 aa1.72□□□□□ -2.13
COL2A1-201ENST00000337299 KRTAP5-7Q6L8G8 165 aa1.69□□□□□ -2.14
COL2A1-201ENST00000337299 MUC16Q8WXI7 14507 aa1.16□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 12.1 ms