RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 LOC100996750A0A140TA64 210 aa4.33□□□□□ -1.72
HMGCS1-201ENST00000325110 SYNE1Q8NF91 8797 aaKnown RBP4.32□□□□□ -1.72
HMGCS1-201ENST00000325110 MT1GP13640 62 aa4.31□□□□□ -1.72
HMGCS1-201ENST00000325110 KRTAP2-3P0C7H8 128 aa4.25□□□□□ -1.73
HMGCS1-201ENST00000325110 KRTAP2-4Q9BYR9 128 aa4.25□□□□□ -1.73
HMGCS1-201ENST00000325110 KRTAP2-1Q9BYU5 128 aa4.25□□□□□ -1.73
HMGCS1-201ENST00000325110 OBSCNQ5VST9 7968 aa4.21□□□□□ -1.74
HMGCS1-201ENST00000325110 KRTAP19-6Q3LI70 58 aa4.18□□□□□ -1.74
HMGCS1-201ENST00000325110 SPRR2FQ96RM1 72 aa4.18□□□□□ -1.74
HMGCS1-201ENST00000325110 KRTAP19-4Q3LI73 84 aa4.14□□□□□ -1.75
HMGCS1-201ENST00000325110 MT1MQ8N339 61 aa4.13□□□□□ -1.75
HMGCS1-201ENST00000325110 LCE2DQ5TA82 110 aaPredicted RBP4.12□□□□□ -1.75
HMGCS1-201ENST00000325110 KRTAP19-3Q7Z4W3 81 aa4.12□□□□□ -1.75
HMGCS1-201ENST00000325110 LCE3BQ5TA77 95 aa4.08□□□□□ -1.76
HMGCS1-201ENST00000325110 KRTAP12-4P60329 112 aa4.06□□□□□ -1.76
HMGCS1-201ENST00000325110 SYNE2Q8WXH0 6885 aaKnown RBP4.06□□□□□ -1.76
HMGCS1-201ENST00000325110 MACF1Q9UPN3 7388 aaKnown RBP4.03□□□□□ -1.76
HMGCS1-201ENST00000325110 KRTAP4-9Q9BYQ8 210 aa3.98□□□□□ -1.77
HMGCS1-201ENST00000325110 MDN1Q9NU22 5596 aa3.89□□□□□ -1.79
HMGCS1-201ENST00000325110 LCE5AQ5TCM9 118 aa3.88□□□□□ -1.79
HMGCS1-201ENST00000325110 KRTAP6-1Q3LI64 71 aa3.79□□□□□ -1.8
HMGCS1-201ENST00000325110 LCE3DQ9BYE3 92 aa3.75□□□□□ -1.81
HMGCS1-201ENST00000325110 SPRR2EP22531 72 aa3.74□□□□□ -1.81
HMGCS1-201ENST00000325110 SPRR2BP35325 72 aa3.74□□□□□ -1.81
HMGCS1-201ENST00000325110 SPRR2AP35326 72 aa3.74□□□□□ -1.81
HMGCS1-201ENST00000325110 LCE3EQ5T5B0 92 aa3.68□□□□□ -1.82
HMGCS1-201ENST00000325110 MT1AP04731 61 aa3.67□□□□□ -1.82
HMGCS1-201ENST00000325110 LCE1AQ5T7P2 110 aa3.65□□□□□ -1.83
HMGCS1-201ENST00000325110 KRTAP9-2Q9BYQ4 174 aa3.64□□□□□ -1.83
HMGCS1-201ENST00000325110 KRTAP9-7A8MTY7 169 aa3.62□□□□□ -1.83
HMGCS1-201ENST00000325110 PRM1P04553 51 aa3.6□□□□□ -1.83
HMGCS1-201ENST00000325110 SPRR2DP22532 72 aa3.56□□□□□ -1.84
HMGCS1-201ENST00000325110 KRTAP4-6Q9BYQ5 205 aa3.54□□□□□ -1.84
HMGCS1-201ENST00000325110 KRTAP5-9P26371 169 aa3.45□□□□□ -1.86
HMGCS1-201ENST00000325110 KRTAP6-2Q3LI66 62 aa3.45□□□□□ -1.86
HMGCS1-201ENST00000325110 KRTAP5-5Q701N2 237 aaPredicted RBP3.44□□□□□ -1.86
HMGCS1-201ENST00000325110 KRTAP9-4Q9BYQ2 154 aa3.43□□□□□ -1.86
HMGCS1-201ENST00000325110 MT3P25713 68 aa3.38□□□□□ -1.87
HMGCS1-201ENST00000325110 MT4P47944 62 aa3.28□□□□□ -1.88
HMGCS1-201ENST00000325110 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.25□□□□□ -1.89
HMGCS1-201ENST00000325110 KRTAP6-3Q3LI67 103 aa3.21□□□□□ -1.9
HMGCS1-201ENST00000325110 KRTAP9-6A0A140TA67 174 aa3.07□□□□□ -1.92
HMGCS1-201ENST00000325110 KRTAP2-2Q9BYT5 123 aa3.06□□□□□ -1.92
HMGCS1-201ENST00000325110 LCE1DQ5T752 114 aa3.05□□□□□ -1.92
HMGCS1-201ENST00000325110 NEBP20929 6669 aa3.03□□□□□ -1.92
HMGCS1-201ENST00000325110 LCE1BQ5T7P3 118 aa2.97□□□□□ -1.93
HMGCS1-201ENST00000325110 KRTAP20-2Q3LI61 65 aa2.96□□□□□ -1.94
HMGCS1-201ENST00000325110 KRTAP5-4Q6L8H1 288 aa2.95□□□□□ -1.94
HMGCS1-201ENST00000325110 HMCN1Q96RW7 5635 aa2.95□□□□□ -1.94
HMGCS1-201ENST00000325110 LCE4AQ5TA78 99 aa2.87□□□□□ -1.95
HMGCS1-201ENST00000325110 MUC5ACP98088 5654 aa2.87□□□□□ -1.95
HMGCS1-201ENST00000325110 KRTAP4-11Q9BYQ6 195 aa2.77□□□□□ -1.97
HMGCS1-201ENST00000325110 KRTAP4-12Q9BQ66 201 aa2.76□□□□□ -1.97
HMGCS1-201ENST00000325110 KRTAP5-2Q701N4 177 aa2.75□□□□□ -1.97
HMGCS1-201ENST00000325110 MUC19Q7Z5P9 8384 aa2.73□□□□□ -1.97
HMGCS1-201ENST00000325110 KRTAP20-1Q3LI63 56 aa2.71□□□□□ -1.98
HMGCS1-201ENST00000325110 KRTAP9-9Q9BYP9 154 aa2.7□□□□□ -1.98
HMGCS1-201ENST00000325110 KRTAP5-3Q6L8H2 238 aa2.67□□□□□ -1.98
HMGCS1-201ENST00000325110 KRTAP4-2Q9BYR5 136 aa2.65□□□□□ -1.99
HMGCS1-201ENST00000325110 KRTAP5-10Q6L8G5 202 aa2.58□□□□□ -2
HMGCS1-201ENST00000325110 LCE1EQ5T753 118 aa2.54□□□□□ -2
HMGCS1-201ENST00000325110 KRTAP4-4Q9BYR3 166 aa2.47□□□□□ -2.01
HMGCS1-201ENST00000325110 LCE1CQ5T751 118 aa2.42□□□□□ -2.02
HMGCS1-201ENST00000325110 KRTAP5-1Q6L8H4 278 aa2.41□□□□□ -2.02
HMGCS1-201ENST00000325110 AHNAK2Q8IVF2 5795 aa2.38□□□□□ -2.03
HMGCS1-201ENST00000325110 MUC5BQ9HC84 5762 aaPredicted RBP2.34□□□□□ -2.04
HMGCS1-201ENST00000325110 KRTAP21-2Q3LI59 83 aa2.33□□□□□ -2.04
HMGCS1-201ENST00000325110 KRTAP5-8O75690 187 aa2.25□□□□□ -2.05
HMGCS1-201ENST00000325110 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.17□□□□□ -2.06
HMGCS1-201ENST00000325110 GPR98Q8WXG9 6306 aa2.11□□□□□ -2.07
HMGCS1-201ENST00000325110 LCE1FQ5T754 118 aa2.09□□□□□ -2.08
HMGCS1-201ENST00000325110 KRTAP5-11Q6L8G4 156 aa2.07□□□□□ -2.08
HMGCS1-201ENST00000325110 KRTAP21-1Q3LI58 79 aa2.04□□□□□ -2.08
HMGCS1-201ENST00000325110 KRTAP5-7Q6L8G8 165 aa2.02□□□□□ -2.09
HMGCS1-201ENST00000325110 PHGR1C9JFL3 82 aa1.8□□□□□ -2.12
HMGCS1-201ENST00000325110 AHNAKQ09666 5890 aaKnown RBP1.8□□□□□ -2.12
HMGCS1-201ENST00000325110 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 92.1 ms