RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 KRTAP19-3Q7Z4W3 81 aa2.78□□□□□ -1.97
VPS41-202ENST00000310301 KRTAP2-3P0C7H8 128 aa2.77□□□□□ -1.97
VPS41-202ENST00000310301 KRTAP2-4Q9BYR9 128 aa2.77□□□□□ -1.97
VPS41-202ENST00000310301 LCE3DQ9BYE3 92 aa2.76□□□□□ -1.97
VPS41-202ENST00000310301 FLGP20930 4061 aaPredicted RBP2.76□□□□□ -1.97
VPS41-202ENST00000310301 KRTAP4-8A0A0G2JLE6 195 aa2.75□□□□□ -1.97
VPS41-202ENST00000310301 KRTAP4-8Q9BYQ9 185 aa2.75□□□□□ -1.97
VPS41-202ENST00000310301 LCE3EQ5T5B0 92 aa2.72□□□□□ -1.97
VPS41-202ENST00000310301 LCE1AQ5T7P2 110 aa2.72□□□□□ -1.97
VPS41-202ENST00000310301 MT1EP04732 61 aa2.67□□□□□ -1.98
VPS41-202ENST00000310301 FSIP2Q5CZC0 6907 aa2.67□□□□□ -1.98
VPS41-202ENST00000310301 KRTAP2-2Q9BYT5 123 aa2.66□□□□□ -1.98
VPS41-202ENST00000310301 KRTAP2-1Q9BYU5 128 aa2.66□□□□□ -1.98
VPS41-202ENST00000310301 SYNE2Q8WXH0 6885 aaKnown RBP2.63□□□□□ -1.99
VPS41-202ENST00000310301 MT1LQ93083 61 aa2.63□□□□□ -1.99
VPS41-202ENST00000310301 PRM1P04553 51 aa2.61□□□□□ -1.99
VPS41-202ENST00000310301 KRTAP4-7Q9BYR0 210 aa2.61□□□□□ -1.99
VPS41-202ENST00000310301 MT4P47944 62 aa2.6□□□□□ -1.99
VPS41-202ENST00000310301 MT1MQ8N339 61 aa2.6□□□□□ -1.99
VPS41-202ENST00000310301 LCE4AQ5TA78 99 aa2.55□□□□□ -2
VPS41-202ENST00000310301 MUC2Q02817 5179 aa2.51□□□□□ -2.01
VPS41-202ENST00000310301 MT3P25713 68 aa2.49□□□□□ -2.01
VPS41-202ENST00000310301 KRTAP19-7Q3SYF9 63 aa2.47□□□□□ -2.01
VPS41-202ENST00000310301 LOC100996750A0A140TA64 210 aa2.47□□□□□ -2.01
VPS41-202ENST00000310301 KRTAP5-9P26371 169 aa2.46□□□□□ -2.02
VPS41-202ENST00000310301 USH2AO75445 5202 aa2.43□□□□□ -2.02
VPS41-202ENST00000310301 SSPOA2VEC9 5147 aa2.43□□□□□ -2.02
VPS41-202ENST00000310301 NEBP20929 6669 aa2.42□□□□□ -2.02
VPS41-202ENST00000310301 LCE5AQ5TCM9 118 aa2.42□□□□□ -2.02
VPS41-202ENST00000310301 KRTAP4-3Q9BYR4 195 aa2.4□□□□□ -2.03
VPS41-202ENST00000310301 MT1AP04731 61 aa2.4□□□□□ -2.03
VPS41-202ENST00000310301 LCE1BQ5T7P3 118 aa2.38□□□□□ -2.03
VPS41-202ENST00000310301 KRTAP4-9Q9BYQ8 210 aa2.36□□□□□ -2.03
VPS41-202ENST00000310301 LCE1DQ5T752 114 aa2.35□□□□□ -2.03
VPS41-202ENST00000310301 FCGBPQ9Y6R7 5405 aaPredicted RBP2.32□□□□□ -2.04
VPS41-202ENST00000310301 SYNE1Q8NF91 8797 aaKnown RBP2.3□□□□□ -2.04
VPS41-202ENST00000310301 MACF1Q9UPN3 7388 aaKnown RBP2.29□□□□□ -2.04
VPS41-202ENST00000310301 KRTAP6-2Q3LI66 62 aa2.25□□□□□ -2.05
VPS41-202ENST00000310301 KRTAP9-4Q9BYQ2 154 aa2.22□□□□□ -2.05
VPS41-202ENST00000310301 KMT2DO14686 5537 aa2.21□□□□□ -2.06
VPS41-202ENST00000310301 GPR98Q8WXG9 6306 aa2.19□□□□□ -2.06
VPS41-202ENST00000310301 KRTAP9-6A8MVA2 160 aa2.18□□□□□ -2.06
VPS41-202ENST00000310301 KRTAP9-9Q9BYP9 154 aa2.16□□□□□ -2.06
VPS41-202ENST00000310301 KRTAP6-1Q3LI64 71 aa2.15□□□□□ -2.06
VPS41-202ENST00000310301 KRTAP4-6Q9BYQ5 205 aa2.13□□□□□ -2.07
VPS41-202ENST00000310301 MDN1Q9NU22 5596 aa2.11□□□□□ -2.07
VPS41-202ENST00000310301 KRTAP20-2Q3LI61 65 aa2.08□□□□□ -2.08
VPS41-202ENST00000310301 OBSCNQ5VST9 7968 aa2.08□□□□□ -2.08
VPS41-202ENST00000310301 KRTAP5-4Q6L8H1 288 aa2.06□□□□□ -2.08
VPS41-202ENST00000310301 DSTQ03001 7570 aaKnown RBP2.02□□□□□ -2.09
VPS41-202ENST00000310301 LCE1CQ5T751 118 aa2.02□□□□□ -2.09
VPS41-202ENST00000310301 LCE1EQ5T753 118 aa2.02□□□□□ -2.09
VPS41-202ENST00000310301 LCE1FQ5T754 118 aa2.02□□□□□ -2.09
VPS41-202ENST00000310301 MUC12Q9UKN1 5478 aa1.93□□□□□ -2.1
VPS41-202ENST00000310301 KRTAP4-11Q9BYQ6 195 aa1.93□□□□□ -2.1
VPS41-202ENST00000310301 KRTAP5-3Q6L8H2 238 aa1.91□□□□□ -2.1
VPS41-202ENST00000310301 AHNAK2Q8IVF2 5795 aa1.88□□□□□ -2.11
VPS41-202ENST00000310301 HMCN1Q96RW7 5635 aa1.84□□□□□ -2.12
VPS41-202ENST00000310301 KRTAP5-5Q701N2 237 aaPredicted RBP1.82□□□□□ -2.12
VPS41-202ENST00000310301 KRTAP4-12Q9BQ66 201 aa1.73□□□□□ -2.13
VPS41-202ENST00000310301 KRTAP4-4Q9BYR3 166 aa1.68□□□□□ -2.14
VPS41-202ENST00000310301 KRTAP5-8O75690 187 aa1.67□□□□□ -2.14
VPS41-202ENST00000310301 MUC5ACP98088 5654 aa1.65□□□□□ -2.14
VPS41-202ENST00000310301 AHNAKQ09666 5890 aaKnown RBP1.65□□□□□ -2.14
VPS41-202ENST00000310301 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.65□□□□□ -2.15
VPS41-202ENST00000310301 KRTAP5-2Q701N4 177 aa1.63□□□□□ -2.15
VPS41-202ENST00000310301 KRTAP5-7Q6L8G8 165 aa1.63□□□□□ -2.15
VPS41-202ENST00000310301 KRTAP4-2Q9BYR5 136 aa1.62□□□□□ -2.15
VPS41-202ENST00000310301 KRTAP5-10Q6L8G5 202 aa1.59□□□□□ -2.15
VPS41-202ENST00000310301 MUC19Q7Z5P9 8384 aa1.59□□□□□ -2.15
VPS41-202ENST00000310301 MUC5BQ9HC84 5762 aaPredicted RBP1.45□□□□□ -2.18
VPS41-202ENST00000310301 PHGR1C9JFL3 82 aa1.43□□□□□ -2.18
VPS41-202ENST00000310301 KRTAP5-1Q6L8H4 278 aa1.42□□□□□ -2.18
VPS41-202ENST00000310301 KRTAP5-11Q6L8G4 156 aa1.4□□□□□ -2.19
VPS41-202ENST00000310301 KRTAP21-2Q3LI59 83 aa1.18□□□□□ -2.22
VPS41-202ENST00000310301 KRTAP21-1Q3LI58 79 aa1.11□□□□□ -2.23
VPS41-202ENST00000310301 MUC16Q8WXI7 14507 aa0.81□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 135.1 ms