RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 CRCT1Q9UGL9 99 aa3.9□□□□□ -1.79
PTPN2-201ENST00000309660 INE1O15225 51 aa3.89□□□□□ -1.79
PTPN2-201ENST00000309660 LOC100996750A0A140TA64 210 aa3.86□□□□□ -1.79
PTPN2-201ENST00000309660 MT1GP13640 62 aa3.84□□□□□ -1.8
PTPN2-201ENST00000309660 SPRR2FQ96RM1 72 aa3.82□□□□□ -1.8
PTPN2-201ENST00000309660 MACF1Q9UPN3 7388 aaKnown RBP3.81□□□□□ -1.8
PTPN2-201ENST00000309660 KRTAP19-4Q3LI73 84 aa3.8□□□□□ -1.8
PTPN2-201ENST00000309660 KRTAP19-3Q7Z4W3 81 aa3.79□□□□□ -1.8
PTPN2-201ENST00000309660 MT1MQ8N339 61 aa3.78□□□□□ -1.8
PTPN2-201ENST00000309660 KRTAP2-3P0C7H8 128 aa3.77□□□□□ -1.81
PTPN2-201ENST00000309660 KRTAP2-4Q9BYR9 128 aa3.77□□□□□ -1.81
PTPN2-201ENST00000309660 KRTAP2-1Q9BYU5 128 aa3.77□□□□□ -1.81
PTPN2-201ENST00000309660 SYNE2Q8WXH0 6885 aaKnown RBP3.74□□□□□ -1.81
PTPN2-201ENST00000309660 SYNE1Q8NF91 8797 aaKnown RBP3.65□□□□□ -1.83
PTPN2-201ENST00000309660 LCE5AQ5TCM9 118 aa3.64□□□□□ -1.83
PTPN2-201ENST00000309660 MDN1Q9NU22 5596 aa3.64□□□□□ -1.83
PTPN2-201ENST00000309660 KRTAP9-2Q9BYQ4 174 aa3.63□□□□□ -1.83
PTPN2-201ENST00000309660 LCE3BQ5TA77 95 aa3.56□□□□□ -1.84
PTPN2-201ENST00000309660 KRTAP4-6Q9BYQ5 205 aa3.51□□□□□ -1.85
PTPN2-201ENST00000309660 KRTAP9-6A0A140TA67 174 aa3.48□□□□□ -1.85
PTPN2-201ENST00000309660 SPRR2EP22531 72 aa3.48□□□□□ -1.85
PTPN2-201ENST00000309660 SPRR2BP35325 72 aa3.48□□□□□ -1.85
PTPN2-201ENST00000309660 SPRR2AP35326 72 aa3.48□□□□□ -1.85
PTPN2-201ENST00000309660 OBSCNQ5VST9 7968 aa3.48□□□□□ -1.85
PTPN2-201ENST00000309660 LCE1AQ5T7P2 110 aa3.47□□□□□ -1.85
PTPN2-201ENST00000309660 KRTAP4-9Q9BYQ8 210 aa3.47□□□□□ -1.85
PTPN2-201ENST00000309660 KRTAP12-4P60329 112 aa3.45□□□□□ -1.86
PTPN2-201ENST00000309660 KRTAP6-1Q3LI64 71 aa3.44□□□□□ -1.86
PTPN2-201ENST00000309660 KRTAP5-9P26371 169 aa3.4□□□□□ -1.87
PTPN2-201ENST00000309660 MT1AP04731 61 aa3.35□□□□□ -1.87
PTPN2-201ENST00000309660 SPRR2DP22532 72 aa3.32□□□□□ -1.88
PTPN2-201ENST00000309660 KRTAP5-5Q701N2 237 aaPredicted RBP3.26□□□□□ -1.89
PTPN2-201ENST00000309660 LCE3DQ9BYE3 92 aa3.26□□□□□ -1.89
PTPN2-201ENST00000309660 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.25□□□□□ -1.89
PTPN2-201ENST00000309660 LCE3EQ5T5B0 92 aa3.18□□□□□ -1.9
PTPN2-201ENST00000309660 KRTAP6-3Q3LI67 103 aa3.18□□□□□ -1.9
PTPN2-201ENST00000309660 KRTAP9-4Q9BYQ2 154 aa3.16□□□□□ -1.9
PTPN2-201ENST00000309660 KRTAP6-2Q3LI66 62 aa3.13□□□□□ -1.91
PTPN2-201ENST00000309660 KRTAP9-7A8MTY7 169 aa3.1□□□□□ -1.91
PTPN2-201ENST00000309660 MT3P25713 68 aa3.05□□□□□ -1.92
PTPN2-201ENST00000309660 PRM1P04553 51 aa3.04□□□□□ -1.92
PTPN2-201ENST00000309660 MT4P47944 62 aa3□□□□□ -1.93
PTPN2-201ENST00000309660 NEBP20929 6669 aa3□□□□□ -1.93
PTPN2-201ENST00000309660 KRTAP4-12Q9BQ66 201 aa2.91□□□□□ -1.94
PTPN2-201ENST00000309660 KRTAP5-4Q6L8H1 288 aa2.89□□□□□ -1.95
PTPN2-201ENST00000309660 KRTAP9-9Q9BYP9 154 aa2.88□□□□□ -1.95
PTPN2-201ENST00000309660 KRTAP20-2Q3LI61 65 aa2.81□□□□□ -1.96
PTPN2-201ENST00000309660 HMCN1Q96RW7 5635 aa2.8□□□□□ -1.96
PTPN2-201ENST00000309660 LCE4AQ5TA78 99 aa2.77□□□□□ -1.97
PTPN2-201ENST00000309660 LCE1DQ5T752 114 aa2.77□□□□□ -1.97
PTPN2-201ENST00000309660 MUC5BQ9HC84 5762 aaPredicted RBP2.72□□□□□ -1.97
PTPN2-201ENST00000309660 KRTAP2-2Q9BYT5 123 aa2.72□□□□□ -1.97
PTPN2-201ENST00000309660 KRTAP4-2Q9BYR5 136 aa2.7□□□□□ -1.98
PTPN2-201ENST00000309660 KRTAP5-2Q701N4 177 aa2.68□□□□□ -1.98
PTPN2-201ENST00000309660 KRTAP20-1Q3LI63 56 aa2.63□□□□□ -1.99
PTPN2-201ENST00000309660 KRTAP5-3Q6L8H2 238 aa2.62□□□□□ -1.99
PTPN2-201ENST00000309660 LCE1BQ5T7P3 118 aa2.61□□□□□ -1.99
PTPN2-201ENST00000309660 KRTAP4-11Q9BYQ6 195 aa2.58□□□□□ -2
PTPN2-201ENST00000309660 MUC5ACP98088 5654 aa2.57□□□□□ -2
PTPN2-201ENST00000309660 GPR98Q8WXG9 6306 aa2.55□□□□□ -2
PTPN2-201ENST00000309660 KRTAP5-7Q6L8G8 165 aa2.52□□□□□ -2.01
PTPN2-201ENST00000309660 AHNAKQ09666 5890 aaKnown RBP2.49□□□□□ -2.01
PTPN2-201ENST00000309660 LCE1EQ5T753 118 aa2.43□□□□□ -2.02
PTPN2-201ENST00000309660 KRTAP5-1Q6L8H4 278 aa2.34□□□□□ -2.04
PTPN2-201ENST00000309660 KRTAP5-10Q6L8G5 202 aa2.33□□□□□ -2.04
PTPN2-201ENST00000309660 LCE1CQ5T751 118 aa2.3□□□□□ -2.04
PTPN2-201ENST00000309660 AHNAK2Q8IVF2 5795 aa2.23□□□□□ -2.05
PTPN2-201ENST00000309660 KRTAP5-8O75690 187 aa2.22□□□□□ -2.05
PTPN2-201ENST00000309660 LCE1FQ5T754 118 aa2.2□□□□□ -2.06
PTPN2-201ENST00000309660 MUC19Q7Z5P9 8384 aa2.18□□□□□ -2.06
PTPN2-201ENST00000309660 KRTAP21-2Q3LI59 83 aa2.17□□□□□ -2.06
PTPN2-201ENST00000309660 KRTAP4-4Q9BYR3 166 aa2.15□□□□□ -2.07
PTPN2-201ENST00000309660 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.11□□□□□ -2.07
PTPN2-201ENST00000309660 KRTAP5-11Q6L8G4 156 aa1.98□□□□□ -2.09
PTPN2-201ENST00000309660 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
PTPN2-201ENST00000309660 PHGR1C9JFL3 82 aa1.73□□□□□ -2.13
PTPN2-201ENST00000309660 MUC16Q8WXI7 14507 aa1.09□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 12.5 ms