RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 MUC12Q9UKN1 5478 aa4.57□□□□□ -1.68
CTDP1-202ENST00000299543 KRTAP2-3P0C7H8 128 aa4.54□□□□□ -1.68
CTDP1-202ENST00000299543 KRTAP2-4Q9BYR9 128 aa4.54□□□□□ -1.68
CTDP1-202ENST00000299543 KRTAP2-1Q9BYU5 128 aa4.54□□□□□ -1.68
CTDP1-202ENST00000299543 KRTAP4-3Q9BYR4 195 aa4.52□□□□□ -1.69
CTDP1-202ENST00000299543 LOC100996750A0A140TA64 210 aa4.49□□□□□ -1.69
CTDP1-202ENST00000299543 MT1GP13640 62 aa4.44□□□□□ -1.7
CTDP1-202ENST00000299543 KRTAP12-4P60329 112 aa4.44□□□□□ -1.7
CTDP1-202ENST00000299543 KRTAP19-6Q3LI70 58 aa4.44□□□□□ -1.7
CTDP1-202ENST00000299543 LCE2DQ5TA82 110 aaPredicted RBP4.37□□□□□ -1.71
CTDP1-202ENST00000299543 KRTAP19-4Q3LI73 84 aa4.35□□□□□ -1.71
CTDP1-202ENST00000299543 MT1MQ8N339 61 aa4.31□□□□□ -1.72
CTDP1-202ENST00000299543 KRTAP19-3Q7Z4W3 81 aa4.3□□□□□ -1.72
CTDP1-202ENST00000299543 SPRR2FQ96RM1 72 aa4.3□□□□□ -1.72
CTDP1-202ENST00000299543 SYNE2Q8WXH0 6885 aaKnown RBP4.27□□□□□ -1.73
CTDP1-202ENST00000299543 MACF1Q9UPN3 7388 aaKnown RBP4.24□□□□□ -1.73
CTDP1-202ENST00000299543 KRTAP9-2Q9BYQ4 174 aa4.2□□□□□ -1.74
CTDP1-202ENST00000299543 KRTAP4-9Q9BYQ8 210 aa4.18□□□□□ -1.74
CTDP1-202ENST00000299543 LCE3BQ5TA77 95 aa4.15□□□□□ -1.74
CTDP1-202ENST00000299543 LCE5AQ5TCM9 118 aa4.11□□□□□ -1.75
CTDP1-202ENST00000299543 MDN1Q9NU22 5596 aa4.1□□□□□ -1.75
CTDP1-202ENST00000299543 KRTAP9-7A8MTY7 169 aa4.04□□□□□ -1.76
CTDP1-202ENST00000299543 PRM1P04553 51 aa3.99□□□□□ -1.77
CTDP1-202ENST00000299543 KRTAP6-1Q3LI64 71 aa3.96□□□□□ -1.78
CTDP1-202ENST00000299543 SPRR2EP22531 72 aa3.87□□□□□ -1.79
CTDP1-202ENST00000299543 SPRR2BP35325 72 aa3.87□□□□□ -1.79
CTDP1-202ENST00000299543 SPRR2AP35326 72 aa3.87□□□□□ -1.79
CTDP1-202ENST00000299543 LCE1AQ5T7P2 110 aa3.86□□□□□ -1.79
CTDP1-202ENST00000299543 LCE3DQ9BYE3 92 aa3.85□□□□□ -1.79
CTDP1-202ENST00000299543 KRTAP5-5Q701N2 237 aaPredicted RBP3.83□□□□□ -1.8
CTDP1-202ENST00000299543 KRTAP6-3Q3LI67 103 aa3.83□□□□□ -1.8
CTDP1-202ENST00000299543 MT1AP04731 61 aa3.83□□□□□ -1.8
CTDP1-202ENST00000299543 KRTAP9-6A0A140TA67 174 aa3.8□□□□□ -1.8
CTDP1-202ENST00000299543 LCE3EQ5T5B0 92 aa3.8□□□□□ -1.8
CTDP1-202ENST00000299543 KRTAP5-9P26371 169 aa3.71□□□□□ -1.82
CTDP1-202ENST00000299543 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.69□□□□□ -1.82
CTDP1-202ENST00000299543 SPRR2DP22532 72 aa3.68□□□□□ -1.82
CTDP1-202ENST00000299543 LCE1EQ5T753 118 aa3.64□□□□□ -1.83
CTDP1-202ENST00000299543 KRTAP6-2Q3LI66 62 aa3.63□□□□□ -1.83
CTDP1-202ENST00000299543 KRTAP2-2Q9BYT5 123 aa3.62□□□□□ -1.83
CTDP1-202ENST00000299543 KRTAP9-4Q9BYQ2 154 aa3.61□□□□□ -1.83
CTDP1-202ENST00000299543 MT3P25713 68 aa3.49□□□□□ -1.85
CTDP1-202ENST00000299543 MUC19Q7Z5P9 8384 aa3.48□□□□□ -1.85
CTDP1-202ENST00000299543 LCE1DQ5T752 114 aa3.46□□□□□ -1.86
CTDP1-202ENST00000299543 NEBP20929 6669 aa3.42□□□□□ -1.86
CTDP1-202ENST00000299543 MT4P47944 62 aa3.36□□□□□ -1.87
CTDP1-202ENST00000299543 KRTAP4-6Q9BYQ5 205 aa3.31□□□□□ -1.88
CTDP1-202ENST00000299543 KRTAP5-4Q6L8H1 288 aa3.19□□□□□ -1.9
CTDP1-202ENST00000299543 KRTAP20-2Q3LI61 65 aa3.12□□□□□ -1.91
CTDP1-202ENST00000299543 HMCN1Q96RW7 5635 aa3.12□□□□□ -1.91
CTDP1-202ENST00000299543 KRTAP20-1Q3LI63 56 aa3.08□□□□□ -1.92
CTDP1-202ENST00000299543 KRTAP4-11Q9BYQ6 195 aa3.06□□□□□ -1.92
CTDP1-202ENST00000299543 LCE4AQ5TA78 99 aa3.03□□□□□ -1.92
CTDP1-202ENST00000299543 LCE1BQ5T7P3 118 aa3□□□□□ -1.93
CTDP1-202ENST00000299543 MUC5ACP98088 5654 aa2.99□□□□□ -1.93
CTDP1-202ENST00000299543 KRTAP5-2Q701N4 177 aa2.97□□□□□ -1.93
CTDP1-202ENST00000299543 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
CTDP1-202ENST00000299543 KRTAP5-3Q6L8H2 238 aa2.88□□□□□ -1.95
CTDP1-202ENST00000299543 KRTAP5-10Q6L8G5 202 aa2.71□□□□□ -1.98
CTDP1-202ENST00000299543 KRTAP4-2Q9BYR5 136 aa2.65□□□□□ -1.99
CTDP1-202ENST00000299543 KRTAP5-1Q6L8H4 278 aa2.59□□□□□ -1.99
CTDP1-202ENST00000299543 LCE1CQ5T751 118 aa2.59□□□□□ -2
CTDP1-202ENST00000299543 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -2
CTDP1-202ENST00000299543 AHNAK2Q8IVF2 5795 aa2.58□□□□□ -2
CTDP1-202ENST00000299543 GPR98Q8WXG9 6306 aa2.51□□□□□ -2.01
CTDP1-202ENST00000299543 KRTAP21-2Q3LI59 83 aa2.48□□□□□ -2.01
CTDP1-202ENST00000299543 MUC5BQ9HC84 5762 aaPredicted RBP2.47□□□□□ -2.01
CTDP1-202ENST00000299543 KRTAP5-8O75690 187 aa2.42□□□□□ -2.02
CTDP1-202ENST00000299543 KRTAP9-9Q9BYP9 154 aa2.39□□□□□ -2.03
CTDP1-202ENST00000299543 KRTAP21-1Q3LI58 79 aa2.37□□□□□ -2.03
CTDP1-202ENST00000299543 KRTAP4-12Q9BQ66 201 aa2.36□□□□□ -2.03
CTDP1-202ENST00000299543 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.36□□□□□ -2.03
CTDP1-202ENST00000299543 KRTAP5-7Q6L8G8 165 aa2.23□□□□□ -2.05
CTDP1-202ENST00000299543 AHNAKQ09666 5890 aaKnown RBP2.21□□□□□ -2.06
CTDP1-202ENST00000299543 KRTAP5-11Q6L8G4 156 aa2.2□□□□□ -2.06
CTDP1-202ENST00000299543 PHGR1C9JFL3 82 aa1.93□□□□□ -2.1
CTDP1-202ENST00000299543 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 11.9 ms