RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 KMT2CQ8NEZ4 4911 aaKnown RBP3.18□□□□□ -1.9
SHROOM3-201ENST00000296043 KRTAP9-6A8MVA2 160 aa3.18□□□□□ -1.9
SHROOM3-201ENST00000296043 LCE5AQ5TCM9 118 aa3.16□□□□□ -1.9
SHROOM3-201ENST00000296043 LRP2P98164 4655 aa3.12□□□□□ -1.91
SHROOM3-201ENST00000296043 PCLOQ9Y6V0 5065 aa3.12□□□□□ -1.91
SHROOM3-201ENST00000296043 KRTAP19-7Q3SYF9 63 aa3.11□□□□□ -1.91
SHROOM3-201ENST00000296043 KRTAP6-1Q3LI64 71 aa3.1□□□□□ -1.91
SHROOM3-201ENST00000296043 KRTAP19-2Q3LHN2 52 aa3.09□□□□□ -1.92
SHROOM3-201ENST00000296043 BIRC6Q9NR09 4857 aa3.08□□□□□ -1.92
SHROOM3-201ENST00000296043 KRTAP2-2Q9BYT5 123 aa3.08□□□□□ -1.92
SHROOM3-201ENST00000296043 LCE4AQ5TA78 99 aa3.07□□□□□ -1.92
SHROOM3-201ENST00000296043 LPAP08519 4548 aa3.02□□□□□ -1.93
SHROOM3-201ENST00000296043 LCE1CQ5T751 118 aa3.02□□□□□ -1.93
SHROOM3-201ENST00000296043 LCE1EQ5T753 118 aa3.02□□□□□ -1.93
SHROOM3-201ENST00000296043 LCE1FQ5T754 118 aa3.02□□□□□ -1.93
SHROOM3-201ENST00000296043 LCE1AQ5T7P2 110 aa3.02□□□□□ -1.93
SHROOM3-201ENST00000296043 HYDINQ4G0P3 5121 aa3.01□□□□□ -1.93
SHROOM3-201ENST00000296043 HERC2O95714 4834 aa2.99□□□□□ -1.93
SHROOM3-201ENST00000296043 HERC1Q15751 4861 aa2.92□□□□□ -1.94
SHROOM3-201ENST00000296043 KRTAP9-6A0A140TA67 174 aa2.9□□□□□ -1.94
SHROOM3-201ENST00000296043 KRTAP19-6Q3LI70 58 aa2.9□□□□□ -1.95
SHROOM3-201ENST00000296043 KRTAP4-11Q9BYQ6 195 aa2.9□□□□□ -1.95
SHROOM3-201ENST00000296043 KRTAP9-4Q9BYQ2 154 aa2.9□□□□□ -1.95
SHROOM3-201ENST00000296043 SYNE2Q8WXH0 6885 aaKnown RBP2.83□□□□□ -1.96
SHROOM3-201ENST00000296043 RYR2Q92736 4967 aa2.79□□□□□ -1.96
SHROOM3-201ENST00000296043 KIAA1109Q2LD37 5005 aa2.76□□□□□ -1.97
SHROOM3-201ENST00000296043 SYNE1Q8NF91 8797 aaKnown RBP2.69□□□□□ -1.98
SHROOM3-201ENST00000296043 EPPK1P58107 5090 aaKnown RBP2.68□□□□□ -1.98
SHROOM3-201ENST00000296043 KRTAP6-3Q3LI67 103 aa2.62□□□□□ -1.99
SHROOM3-201ENST00000296043 RNF213Q63HN8 5207 aa2.6□□□□□ -1.99
SHROOM3-201ENST00000296043 HMCN2Q8NDA2 5059 aa2.59□□□□□ -1.99
SHROOM3-201ENST00000296043 KRTAP4-4Q9BYR3 166 aa2.57□□□□□ -2
SHROOM3-201ENST00000296043 KRTAP20-1Q3LI63 56 aa2.57□□□□□ -2
SHROOM3-201ENST00000296043 MUC2Q02817 5179 aa2.53□□□□□ -2
SHROOM3-201ENST00000296043 KRTAP5-5Q701N2 237 aaPredicted RBP2.52□□□□□ -2.01
SHROOM3-201ENST00000296043 KRTAP20-2Q3LI61 65 aa2.51□□□□□ -2.01
SHROOM3-201ENST00000296043 UBR4Q5T4S7 5183 aa2.5□□□□□ -2.01
SHROOM3-201ENST00000296043 LCE2AQ5TA79 106 aaPredicted RBP2.49□□□□□ -2.01
SHROOM3-201ENST00000296043 FAT4Q6V0I7 4981 aa2.46□□□□□ -2.02
SHROOM3-201ENST00000296043 ABCA13Q86UQ4 5058 aa2.44□□□□□ -2.02
SHROOM3-201ENST00000296043 KRTAP9-9Q9BYP9 154 aa2.4□□□□□ -2.03
SHROOM3-201ENST00000296043 USH2AO75445 5202 aa2.36□□□□□ -2.03
SHROOM3-201ENST00000296043 KRTAP4-12Q9BQ66 201 aa2.33□□□□□ -2.04
SHROOM3-201ENST00000296043 KRTAP4-2Q9BYR5 136 aa2.33□□□□□ -2.04
SHROOM3-201ENST00000296043 KMT2DO14686 5537 aa2.31□□□□□ -2.04
SHROOM3-201ENST00000296043 MUC12Q9UKN1 5478 aa2.3□□□□□ -2.04
SHROOM3-201ENST00000296043 KRTAP4-6Q9BYQ5 205 aa2.26□□□□□ -2.05
SHROOM3-201ENST00000296043 FSIP2Q5CZC0 6907 aa2.25□□□□□ -2.05
SHROOM3-201ENST00000296043 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.24□□□□□ -2.05
SHROOM3-201ENST00000296043 FCGBPQ9Y6R7 5405 aaPredicted RBP2.2□□□□□ -2.06
SHROOM3-201ENST00000296043 OBSCNQ5VST9 7968 aa2.19□□□□□ -2.06
SHROOM3-201ENST00000296043 MDN1Q9NU22 5596 aa2.02□□□□□ -2.09
SHROOM3-201ENST00000296043 SSPOA2VEC9 5147 aa1.94□□□□□ -2.1
SHROOM3-201ENST00000296043 KRTAP5-4Q6L8H1 288 aa1.91□□□□□ -2.1
SHROOM3-201ENST00000296043 KRTAP5-9P26371 169 aa1.89□□□□□ -2.11
SHROOM3-201ENST00000296043 NEBP20929 6669 aa1.89□□□□□ -2.11
SHROOM3-201ENST00000296043 KRTAP5-2Q701N4 177 aa1.85□□□□□ -2.11
SHROOM3-201ENST00000296043 MUC19Q7Z5P9 8384 aa1.85□□□□□ -2.11
SHROOM3-201ENST00000296043 GPR98Q8WXG9 6306 aa1.82□□□□□ -2.12
SHROOM3-201ENST00000296043 DSTQ03001 7570 aaKnown RBP1.8□□□□□ -2.12
SHROOM3-201ENST00000296043 KRTAP5-10Q6L8G5 202 aa1.78□□□□□ -2.12
SHROOM3-201ENST00000296043 MUC5ACP98088 5654 aa1.68□□□□□ -2.14
SHROOM3-201ENST00000296043 MACF1Q9UPN3 7388 aaKnown RBP1.67□□□□□ -2.14
SHROOM3-201ENST00000296043 KRTAP5-3Q6L8H2 238 aa1.62□□□□□ -2.15
SHROOM3-201ENST00000296043 MUC5BQ9HC84 5762 aaPredicted RBP1.6□□□□□ -2.15
SHROOM3-201ENST00000296043 HMCN1Q96RW7 5635 aa1.59□□□□□ -2.16
SHROOM3-201ENST00000296043 KRTAP5-1Q6L8H4 278 aa1.57□□□□□ -2.16
SHROOM3-201ENST00000296043 KRTAP21-1Q3LI58 79 aa1.54□□□□□ -2.16
SHROOM3-201ENST00000296043 KRTAP5-8O75690 187 aa1.53□□□□□ -2.16
SHROOM3-201ENST00000296043 AHNAK2Q8IVF2 5795 aa1.49□□□□□ -2.17
SHROOM3-201ENST00000296043 PHGR1C9JFL3 82 aa1.49□□□□□ -2.17
SHROOM3-201ENST00000296043 KRTAP21-2Q3LI59 83 aa1.4□□□□□ -2.19
SHROOM3-201ENST00000296043 AHNAKQ09666 5890 aaKnown RBP1.34□□□□□ -2.2
SHROOM3-201ENST00000296043 KRTAP5-11Q6L8G4 156 aa1.32□□□□□ -2.2
SHROOM3-201ENST00000296043 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.12□□□□□ -2.23
SHROOM3-201ENST00000296043 KRTAP5-7Q6L8G8 165 aa1.07□□□□□ -2.24
SHROOM3-201ENST00000296043 MUC16Q8WXI7 14507 aa0.97□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 64.5 ms