RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 KRTAP2-4Q9BYR9 128 aa5.41□□□□□ -1.54
GPC1-201ENST00000264039 KRTAP2-1Q9BYU5 128 aa5.41□□□□□ -1.54
GPC1-201ENST00000264039 KRTAP4-3Q9BYR4 195 aa5.36□□□□□ -1.55
GPC1-201ENST00000264039 LCE3BQ5TA77 95 aa5.34□□□□□ -1.55
GPC1-201ENST00000264039 KRTAP19-7Q3SYF9 63 aa5.32□□□□□ -1.56
GPC1-201ENST00000264039 MT1LQ93083 61 aa5.31□□□□□ -1.56
GPC1-201ENST00000264039 MT1EP04732 61 aa5.21□□□□□ -1.58
GPC1-201ENST00000264039 KRTAP4-9Q9BYQ8 210 aa5.21□□□□□ -1.58
GPC1-201ENST00000264039 MUC12Q9UKN1 5478 aa5.16□□□□□ -1.58
GPC1-201ENST00000264039 SYNE2Q8WXH0 6885 aaKnown RBP5.06□□□□□ -1.6
GPC1-201ENST00000264039 PRM1P04553 51 aa5□□□□□ -1.61
GPC1-201ENST00000264039 SPRR2FQ96RM1 72 aa4.99□□□□□ -1.61
GPC1-201ENST00000264039 SSPOA2VEC9 5147 aa4.97□□□□□ -1.61
GPC1-201ENST00000264039 LCE3DQ9BYE3 92 aa4.97□□□□□ -1.61
GPC1-201ENST00000264039 KRTAP19-4Q3LI73 84 aa4.96□□□□□ -1.62
GPC1-201ENST00000264039 MT1MQ8N339 61 aa4.91□□□□□ -1.62
GPC1-201ENST00000264039 LCE3EQ5T5B0 92 aa4.9□□□□□ -1.63
GPC1-201ENST00000264039 KRTAP9-7A8MTY7 169 aa4.88□□□□□ -1.63
GPC1-201ENST00000264039 KRTAP19-3Q7Z4W3 81 aa4.88□□□□□ -1.63
GPC1-201ENST00000264039 LCE2DQ5TA82 110 aaPredicted RBP4.87□□□□□ -1.63
GPC1-201ENST00000264039 KRTAP9-2Q9BYQ4 174 aa4.84□□□□□ -1.63
GPC1-201ENST00000264039 KRTAP19-6Q3LI70 58 aa4.82□□□□□ -1.64
GPC1-201ENST00000264039 KRTAP6-1Q3LI64 71 aa4.63□□□□□ -1.67
GPC1-201ENST00000264039 MACF1Q9UPN3 7388 aaKnown RBP4.61□□□□□ -1.67
GPC1-201ENST00000264039 KRTAP6-2Q3LI66 62 aa4.54□□□□□ -1.68
GPC1-201ENST00000264039 MT1AP04731 61 aa4.43□□□□□ -1.7
GPC1-201ENST00000264039 KRTAP9-6A0A140TA67 174 aa4.42□□□□□ -1.7
GPC1-201ENST00000264039 LCE5AQ5TCM9 118 aa4.4□□□□□ -1.71
GPC1-201ENST00000264039 KRTAP5-5Q701N2 237 aaPredicted RBP4.39□□□□□ -1.71
GPC1-201ENST00000264039 MDN1Q9NU22 5596 aa4.35□□□□□ -1.71
GPC1-201ENST00000264039 MUC19Q7Z5P9 8384 aa4.35□□□□□ -1.71
GPC1-201ENST00000264039 LCE1AQ5T7P2 110 aa4.33□□□□□ -1.72
GPC1-201ENST00000264039 SPRR2EP22531 72 aa4.32□□□□□ -1.72
GPC1-201ENST00000264039 SPRR2BP35325 72 aa4.32□□□□□ -1.72
GPC1-201ENST00000264039 SPRR2AP35326 72 aa4.32□□□□□ -1.72
GPC1-201ENST00000264039 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.29□□□□□ -1.72
GPC1-201ENST00000264039 KRTAP6-3Q3LI67 103 aa4.26□□□□□ -1.73
GPC1-201ENST00000264039 KRTAP2-2Q9BYT5 123 aa4.23□□□□□ -1.73
GPC1-201ENST00000264039 MT3P25713 68 aa4.18□□□□□ -1.74
GPC1-201ENST00000264039 KRTAP5-9P26371 169 aa4.17□□□□□ -1.74
GPC1-201ENST00000264039 LCE1EQ5T753 118 aa4.16□□□□□ -1.74
GPC1-201ENST00000264039 KRTAP9-4Q9BYQ2 154 aa4.09□□□□□ -1.76
GPC1-201ENST00000264039 SPRR2DP22532 72 aa4.08□□□□□ -1.76
GPC1-201ENST00000264039 LCE1DQ5T752 114 aa3.9□□□□□ -1.79
GPC1-201ENST00000264039 MT4P47944 62 aa3.9□□□□□ -1.79
GPC1-201ENST00000264039 NEBP20929 6669 aa3.89□□□□□ -1.79
GPC1-201ENST00000264039 LCE1BQ5T7P3 118 aa3.87□□□□□ -1.79
GPC1-201ENST00000264039 KRTAP4-11Q9BYQ6 195 aa3.83□□□□□ -1.8
GPC1-201ENST00000264039 KRTAP20-1Q3LI63 56 aa3.61□□□□□ -1.83
GPC1-201ENST00000264039 KRTAP4-6Q9BYQ5 205 aa3.56□□□□□ -1.84
GPC1-201ENST00000264039 LCE4AQ5TA78 99 aa3.46□□□□□ -1.86
GPC1-201ENST00000264039 KRTAP5-4Q6L8H1 288 aa3.46□□□□□ -1.86
GPC1-201ENST00000264039 MUC5ACP98088 5654 aa3.45□□□□□ -1.86
GPC1-201ENST00000264039 HMCN1Q96RW7 5635 aa3.41□□□□□ -1.86
GPC1-201ENST00000264039 KRTAP20-2Q3LI61 65 aa3.35□□□□□ -1.87
GPC1-201ENST00000264039 KRTAP4-4Q9BYR3 166 aa3.25□□□□□ -1.89
GPC1-201ENST00000264039 LCE1FQ5T754 118 aa3.19□□□□□ -1.9
GPC1-201ENST00000264039 KRTAP5-10Q6L8G5 202 aa3.16□□□□□ -1.9
GPC1-201ENST00000264039 KRTAP5-3Q6L8H2 238 aa3.14□□□□□ -1.91
GPC1-201ENST00000264039 KRTAP5-2Q701N4 177 aa3.12□□□□□ -1.91
GPC1-201ENST00000264039 AHNAK2Q8IVF2 5795 aa2.9□□□□□ -1.94
GPC1-201ENST00000264039 KRTAP4-12Q9BQ66 201 aa2.88□□□□□ -1.95
GPC1-201ENST00000264039 KRTAP4-2Q9BYR5 136 aa2.88□□□□□ -1.95
GPC1-201ENST00000264039 LCE1CQ5T751 118 aa2.8□□□□□ -1.96
GPC1-201ENST00000264039 KRTAP5-1Q6L8H4 278 aa2.76□□□□□ -1.97
GPC1-201ENST00000264039 GPR98Q8WXG9 6306 aa2.75□□□□□ -1.97
GPC1-201ENST00000264039 KRTAP5-8O75690 187 aa2.74□□□□□ -1.97
GPC1-201ENST00000264039 MUC5BQ9HC84 5762 aaPredicted RBP2.7□□□□□ -1.98
GPC1-201ENST00000264039 KRTAP21-2Q3LI59 83 aa2.69□□□□□ -1.98
GPC1-201ENST00000264039 KRTAP21-1Q3LI58 79 aa2.67□□□□□ -1.98
GPC1-201ENST00000264039 KRTAP9-9Q9BYP9 154 aa2.57□□□□□ -2
GPC1-201ENST00000264039 KRTAP5-7Q6L8G8 165 aa2.52□□□□□ -2.01
GPC1-201ENST00000264039 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.39□□□□□ -2.03
GPC1-201ENST00000264039 KRTAP5-11Q6L8G4 156 aa2.31□□□□□ -2.04
GPC1-201ENST00000264039 AHNAKQ09666 5890 aaKnown RBP2.18□□□□□ -2.06
GPC1-201ENST00000264039 PHGR1C9JFL3 82 aa2.01□□□□□ -2.09
GPC1-201ENST00000264039 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 100.7 ms