RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 SPRR2FQ96RM1 72 aa5.49□□□□□ -1.53
CTCF-201ENST00000264010 LCE2DQ5TA82 110 aaPredicted RBP5.46□□□□□ -1.54
CTCF-201ENST00000264010 MT1GP13640 62 aa5.45□□□□□ -1.54
CTCF-201ENST00000264010 KRTAP19-3Q7Z4W3 81 aa5.4□□□□□ -1.54
CTCF-201ENST00000264010 DSTQ03001 7570 aaKnown RBP5.38□□□□□ -1.55
CTCF-201ENST00000264010 SSPOA2VEC9 5147 aa5.36□□□□□ -1.55
CTCF-201ENST00000264010 MT1MQ8N339 61 aa5.31□□□□□ -1.56
CTCF-201ENST00000264010 FCGBPQ9Y6R7 5405 aaPredicted RBP5.3□□□□□ -1.56
CTCF-201ENST00000264010 LCE3BQ5TA77 95 aa5.29□□□□□ -1.56
CTCF-201ENST00000264010 KRTAP4-3Q9BYR4 195 aa5.26□□□□□ -1.57
CTCF-201ENST00000264010 MUC12Q9UKN1 5478 aa5.26□□□□□ -1.57
CTCF-201ENST00000264010 KRTAP2-3P0C7H8 128 aa5.24□□□□□ -1.57
CTCF-201ENST00000264010 KRTAP2-4Q9BYR9 128 aa5.24□□□□□ -1.57
CTCF-201ENST00000264010 KRTAP2-1Q9BYU5 128 aa5.24□□□□□ -1.57
CTCF-201ENST00000264010 LOC100996750A0A140TA64 210 aa5.19□□□□□ -1.58
CTCF-201ENST00000264010 KRTAP9-2Q9BYQ4 174 aa5.12□□□□□ -1.59
CTCF-201ENST00000264010 SPRR2EP22531 72 aa5.07□□□□□ -1.6
CTCF-201ENST00000264010 SPRR2BP35325 72 aa5.07□□□□□ -1.6
CTCF-201ENST00000264010 SPRR2AP35326 72 aa5.07□□□□□ -1.6
CTCF-201ENST00000264010 LCE5AQ5TCM9 118 aa5.06□□□□□ -1.6
CTCF-201ENST00000264010 MUC19Q7Z5P9 8384 aa5.01□□□□□ -1.61
CTCF-201ENST00000264010 PRM1P04553 51 aa5□□□□□ -1.61
CTCF-201ENST00000264010 KRTAP4-9Q9BYQ8 210 aa4.95□□□□□ -1.62
CTCF-201ENST00000264010 LCE3DQ9BYE3 92 aa4.95□□□□□ -1.62
CTCF-201ENST00000264010 LCE3EQ5T5B0 92 aa4.88□□□□□ -1.63
CTCF-201ENST00000264010 SPRR2DP22532 72 aa4.87□□□□□ -1.63
CTCF-201ENST00000264010 MACF1Q9UPN3 7388 aaKnown RBP4.85□□□□□ -1.63
CTCF-201ENST00000264010 LCE1AQ5T7P2 110 aa4.84□□□□□ -1.63
CTCF-201ENST00000264010 MT1AP04731 61 aa4.81□□□□□ -1.64
CTCF-201ENST00000264010 SYNE2Q8WXH0 6885 aaKnown RBP4.8□□□□□ -1.64
CTCF-201ENST00000264010 KRTAP5-9P26371 169 aa4.75□□□□□ -1.65
CTCF-201ENST00000264010 KRTAP6-1Q3LI64 71 aa4.73□□□□□ -1.65
CTCF-201ENST00000264010 KRTAP9-7A8MTY7 169 aa4.65□□□□□ -1.66
CTCF-201ENST00000264010 KRTAP6-3Q3LI67 103 aa4.65□□□□□ -1.67
CTCF-201ENST00000264010 MDN1Q9NU22 5596 aa4.61□□□□□ -1.67
CTCF-201ENST00000264010 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.59□□□□□ -1.68
CTCF-201ENST00000264010 KRTAP9-6A0A140TA67 174 aa4.57□□□□□ -1.68
CTCF-201ENST00000264010 MT3P25713 68 aa4.51□□□□□ -1.69
CTCF-201ENST00000264010 KRTAP9-4Q9BYQ2 154 aa4.5□□□□□ -1.69
CTCF-201ENST00000264010 KRTAP5-5Q701N2 237 aaPredicted RBP4.41□□□□□ -1.7
CTCF-201ENST00000264010 KRTAP6-2Q3LI66 62 aa4.36□□□□□ -1.71
CTCF-201ENST00000264010 LCE1EQ5T753 118 aa4.3□□□□□ -1.72
CTCF-201ENST00000264010 MT4P47944 62 aa4.27□□□□□ -1.73
CTCF-201ENST00000264010 LCE4AQ5TA78 99 aa4.15□□□□□ -1.74
CTCF-201ENST00000264010 KRTAP2-2Q9BYT5 123 aa4.11□□□□□ -1.75
CTCF-201ENST00000264010 NEBP20929 6669 aa4.08□□□□□ -1.76
CTCF-201ENST00000264010 KRTAP5-4Q6L8H1 288 aa4.01□□□□□ -1.77
CTCF-201ENST00000264010 KRTAP4-6Q9BYQ5 205 aa4.01□□□□□ -1.77
CTCF-201ENST00000264010 LCE1BQ5T7P3 118 aa4.01□□□□□ -1.77
CTCF-201ENST00000264010 LCE1DQ5T752 114 aa3.97□□□□□ -1.77
CTCF-201ENST00000264010 KRTAP20-2Q3LI61 65 aa3.95□□□□□ -1.78
CTCF-201ENST00000264010 KRTAP20-1Q3LI63 56 aa3.94□□□□□ -1.78
CTCF-201ENST00000264010 KRTAP4-11Q9BYQ6 195 aa3.81□□□□□ -1.8
CTCF-201ENST00000264010 KRTAP5-2Q701N4 177 aa3.69□□□□□ -1.82
CTCF-201ENST00000264010 HMCN1Q96RW7 5635 aa3.63□□□□□ -1.83
CTCF-201ENST00000264010 KRTAP5-3Q6L8H2 238 aa3.57□□□□□ -1.84
CTCF-201ENST00000264010 LCE1FQ5T754 118 aa3.5□□□□□ -1.85
CTCF-201ENST00000264010 MUC5ACP98088 5654 aa3.48□□□□□ -1.85
CTCF-201ENST00000264010 LCE1CQ5T751 118 aa3.27□□□□□ -1.89
CTCF-201ENST00000264010 KRTAP4-4Q9BYR3 166 aa3.24□□□□□ -1.89
CTCF-201ENST00000264010 KRTAP4-2Q9BYR5 136 aa3.2□□□□□ -1.9
CTCF-201ENST00000264010 KRTAP5-10Q6L8G5 202 aa3.18□□□□□ -1.9
CTCF-201ENST00000264010 KRTAP5-1Q6L8H4 278 aa3.15□□□□□ -1.9
CTCF-201ENST00000264010 KRTAP5-8O75690 187 aa3.04□□□□□ -1.92
CTCF-201ENST00000264010 KRTAP9-9Q9BYP9 154 aa3.01□□□□□ -1.93
CTCF-201ENST00000264010 AHNAK2Q8IVF2 5795 aa2.99□□□□□ -1.93
CTCF-201ENST00000264010 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.96□□□□□ -1.94
CTCF-201ENST00000264010 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
CTCF-201ENST00000264010 KRTAP21-2Q3LI59 83 aa2.93□□□□□ -1.94
CTCF-201ENST00000264010 KRTAP4-12Q9BQ66 201 aa2.89□□□□□ -1.95
CTCF-201ENST00000264010 KRTAP5-7Q6L8G8 165 aa2.88□□□□□ -1.95
CTCF-201ENST00000264010 KRTAP5-11Q6L8G4 156 aa2.83□□□□□ -1.96
CTCF-201ENST00000264010 MUC5BQ9HC84 5762 aaPredicted RBP2.75□□□□□ -1.97
CTCF-201ENST00000264010 KRTAP21-1Q3LI58 79 aa2.6□□□□□ -1.99
CTCF-201ENST00000264010 PHGR1C9JFL3 82 aa2.41□□□□□ -2.02
CTCF-201ENST00000264010 AHNAKQ09666 5890 aaKnown RBP2.33□□□□□ -2.04
CTCF-201ENST00000264010 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 11 ms