RNA–Protein interactions for RNA: ENST00000263073.10

SMG6-201, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG6, Length 5,960 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-201ENST00000263073 PRM1P04553 51 aa3.84□□□□□ -1.79
SMG6-201ENST00000263073 KRTAP4-3Q9BYR4 195 aa3.83□□□□□ -1.8
SMG6-201ENST00000263073 KRTAP19-3Q7Z4W3 81 aa3.8□□□□□ -1.8
SMG6-201ENST00000263073 MT1EP04732 61 aa3.79□□□□□ -1.8
SMG6-201ENST00000263073 KRTAP4-9Q9BYQ8 210 aa3.71□□□□□ -1.82
SMG6-201ENST00000263073 KRTAP9-2Q9BYQ4 174 aa3.7□□□□□ -1.82
SMG6-201ENST00000263073 LCE2DQ5TA82 110 aaPredicted RBP3.69□□□□□ -1.82
SMG6-201ENST00000263073 MT4P47944 62 aa3.69□□□□□ -1.82
SMG6-201ENST00000263073 MT1MQ8N339 61 aa3.67□□□□□ -1.82
SMG6-201ENST00000263073 LCE2AQ5TA79 106 aaPredicted RBP3.67□□□□□ -1.82
SMG6-201ENST00000263073 KRTAP19-6Q3LI70 58 aa3.64□□□□□ -1.83
SMG6-201ENST00000263073 LCE1BQ5T7P3 118 aa3.61□□□□□ -1.83
SMG6-201ENST00000263073 LCE1DQ5T752 114 aa3.57□□□□□ -1.84
SMG6-201ENST00000263073 MT3P25713 68 aa3.56□□□□□ -1.84
SMG6-201ENST00000263073 SYNE2Q8WXH0 6885 aaKnown RBP3.55□□□□□ -1.84
SMG6-201ENST00000263073 FSIP2Q5CZC0 6907 aa3.54□□□□□ -1.84
SMG6-201ENST00000263073 KRTAP9-6A0A140TA67 174 aa3.52□□□□□ -1.85
SMG6-201ENST00000263073 KRTAP19-7Q3SYF9 63 aa3.49□□□□□ -1.85
SMG6-201ENST00000263073 KRTAP2-3P0C7H8 128 aa3.44□□□□□ -1.86
SMG6-201ENST00000263073 KRTAP2-4Q9BYR9 128 aa3.44□□□□□ -1.86
SMG6-201ENST00000263073 KRTAP2-1Q9BYU5 128 aa3.44□□□□□ -1.86
SMG6-201ENST00000263073 KRTAP9-6A8MVA2 160 aa3.41□□□□□ -1.86
SMG6-201ENST00000263073 SYNE1Q8NF91 8797 aaKnown RBP3.4□□□□□ -1.86
SMG6-201ENST00000263073 USH2AO75445 5202 aa3.39□□□□□ -1.87
SMG6-201ENST00000263073 MT1AP04731 61 aa3.36□□□□□ -1.87
SMG6-201ENST00000263073 KRTAP6-2Q3LI66 62 aa3.34□□□□□ -1.87
SMG6-201ENST00000263073 KRTAP9-7A8MTY7 169 aa3.33□□□□□ -1.88
SMG6-201ENST00000263073 KRTAP6-1Q3LI64 71 aa3.32□□□□□ -1.88
SMG6-201ENST00000263073 LCE5AQ5TCM9 118 aa3.31□□□□□ -1.88
SMG6-201ENST00000263073 KRTAP6-3Q3LI67 103 aa3.27□□□□□ -1.89
SMG6-201ENST00000263073 KMT2DO14686 5537 aa3.24□□□□□ -1.89
SMG6-201ENST00000263073 KRTAP20-1Q3LI63 56 aa3.23□□□□□ -1.89
SMG6-201ENST00000263073 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.22□□□□□ -1.89
SMG6-201ENST00000263073 OBSCNQ5VST9 7968 aa3.2□□□□□ -1.9
SMG6-201ENST00000263073 LCE1AQ5T7P2 110 aa3.15□□□□□ -1.9
SMG6-201ENST00000263073 SSPOA2VEC9 5147 aa3.14□□□□□ -1.91
SMG6-201ENST00000263073 KRTAP9-4Q9BYQ2 154 aa3.14□□□□□ -1.91
SMG6-201ENST00000263073 FCGBPQ9Y6R7 5405 aaPredicted RBP3.1□□□□□ -1.91
SMG6-201ENST00000263073 LCE1CQ5T751 118 aa3.03□□□□□ -1.92
SMG6-201ENST00000263073 LCE1EQ5T753 118 aa3.03□□□□□ -1.92
SMG6-201ENST00000263073 LCE1FQ5T754 118 aa3.03□□□□□ -1.92
SMG6-201ENST00000263073 DSTQ03001 7570 aaKnown RBP3.01□□□□□ -1.93
SMG6-201ENST00000263073 LCE4AQ5TA78 99 aa3□□□□□ -1.93
SMG6-201ENST00000263073 KRTAP2-2Q9BYT5 123 aa3□□□□□ -1.93
SMG6-201ENST00000263073 MUC12Q9UKN1 5478 aa2.99□□□□□ -1.93
SMG6-201ENST00000263073 KRTAP4-11Q9BYQ6 195 aa2.89□□□□□ -1.95
SMG6-201ENST00000263073 KRTAP5-9P26371 169 aa2.87□□□□□ -1.95
SMG6-201ENST00000263073 MACF1Q9UPN3 7388 aaKnown RBP2.81□□□□□ -1.96
SMG6-201ENST00000263073 NEBP20929 6669 aa2.74□□□□□ -1.97
SMG6-201ENST00000263073 MDN1Q9NU22 5596 aa2.69□□□□□ -1.98
SMG6-201ENST00000263073 KRTAP4-6Q9BYQ5 205 aa2.67□□□□□ -1.98
SMG6-201ENST00000263073 KRTAP4-4Q9BYR3 166 aa2.67□□□□□ -1.98
SMG6-201ENST00000263073 MUC19Q7Z5P9 8384 aa2.58□□□□□ -2
SMG6-201ENST00000263073 KRTAP20-2Q3LI61 65 aa2.56□□□□□ -2
SMG6-201ENST00000263073 KRTAP5-5Q701N2 237 aaPredicted RBP2.56□□□□□ -2
SMG6-201ENST00000263073 KRTAP9-9Q9BYP9 154 aa2.55□□□□□ -2
SMG6-201ENST00000263073 KRTAP4-12Q9BQ66 201 aa2.55□□□□□ -2
SMG6-201ENST00000263073 KRTAP4-2Q9BYR5 136 aa2.55□□□□□ -2
SMG6-201ENST00000263073 GPR98Q8WXG9 6306 aa2.51□□□□□ -2.01
SMG6-201ENST00000263073 KRTAP5-4Q6L8H1 288 aa2.49□□□□□ -2.01
SMG6-201ENST00000263073 KRTAP5-3Q6L8H2 238 aa2.13□□□□□ -2.07
SMG6-201ENST00000263073 MUC5ACP98088 5654 aa2.13□□□□□ -2.07
SMG6-201ENST00000263073 HMCN1Q96RW7 5635 aa2.12□□□□□ -2.07
SMG6-201ENST00000263073 KRTAP5-2Q701N4 177 aa2.03□□□□□ -2.08
SMG6-201ENST00000263073 AHNAK2Q8IVF2 5795 aa1.96□□□□□ -2.1
SMG6-201ENST00000263073 KRTAP5-8O75690 187 aa1.95□□□□□ -2.1
SMG6-201ENST00000263073 KRTAP5-10Q6L8G5 202 aa1.93□□□□□ -2.1
SMG6-201ENST00000263073 KRTAP5-7Q6L8G8 165 aa1.79□□□□□ -2.12
SMG6-201ENST00000263073 KRTAP5-1Q6L8H4 278 aa1.75□□□□□ -2.13
SMG6-201ENST00000263073 AHNAKQ09666 5890 aaKnown RBP1.75□□□□□ -2.13
SMG6-201ENST00000263073 PHGR1C9JFL3 82 aa1.72□□□□□ -2.13
SMG6-201ENST00000263073 KRTAP5-11Q6L8G4 156 aa1.68□□□□□ -2.14
SMG6-201ENST00000263073 KRTAP21-2Q3LI59 83 aa1.66□□□□□ -2.14
SMG6-201ENST00000263073 MUC5BQ9HC84 5762 aaPredicted RBP1.65□□□□□ -2.15
SMG6-201ENST00000263073 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.64□□□□□ -2.15
SMG6-201ENST00000263073 KRTAP21-1Q3LI58 79 aa1.54□□□□□ -2.16
SMG6-201ENST00000263073 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 9.9 ms