RNA–Protein interactions for RNA: ENST00000257181.9

PRPF38A-201, Transcript of pre-mRNA processing factor 38A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRPF38A, Length 5,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-201ENST00000257181 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.36□□□□□ -1.71
PRPF38A-201ENST00000257181 LYSTQ99698 3801 aa4.35□□□□□ -1.71
PRPF38A-201ENST00000257181 LCE4AQ5TA78 99 aa4.35□□□□□ -1.71
PRPF38A-201ENST00000257181 HYDINQ4G0P3 5121 aa4.35□□□□□ -1.71
PRPF38A-201ENST00000257181 KRTAP2-2Q9BYT5 123 aa4.3□□□□□ -1.72
PRPF38A-201ENST00000257181 KRTAP2-1Q9BYU5 128 aa4.3□□□□□ -1.72
PRPF38A-201ENST00000257181 LCE3DQ9BYE3 92 aa4.28□□□□□ -1.72
PRPF38A-201ENST00000257181 SPRR5A0A1B0GTR4 108 aa4.25□□□□□ -1.73
PRPF38A-201ENST00000257181 LCE3EQ5T5B0 92 aa4.23□□□□□ -1.73
PRPF38A-201ENST00000257181 EPPK1P58107 5090 aaKnown RBP4.22□□□□□ -1.73
PRPF38A-201ENST00000257181 MT4P47944 62 aa4.21□□□□□ -1.74
PRPF38A-201ENST00000257181 MT1AP04731 61 aa4.18□□□□□ -1.74
PRPF38A-201ENST00000257181 RNF213Q63HN8 5207 aa4.15□□□□□ -1.75
PRPF38A-201ENST00000257181 CSMD3Q7Z407 3707 aa4.14□□□□□ -1.75
PRPF38A-201ENST00000257181 KRTAP19-7Q3SYF9 63 aa4.06□□□□□ -1.76
PRPF38A-201ENST00000257181 FAT4Q6V0I7 4981 aa4.06□□□□□ -1.76
PRPF38A-201ENST00000257181 HMCN2Q8NDA2 5059 aa4.04□□□□□ -1.76
PRPF38A-201ENST00000257181 LCE5AQ5TCM9 118 aa3.98□□□□□ -1.77
PRPF38A-201ENST00000257181 LPAP08519 4548 aa3.98□□□□□ -1.77
PRPF38A-201ENST00000257181 KRTAP5-9P26371 169 aa3.9□□□□□ -1.78
PRPF38A-201ENST00000257181 KRTAP4-7Q9BYR0 210 aa3.87□□□□□ -1.79
PRPF38A-201ENST00000257181 UBR4Q5T4S7 5183 aa3.87□□□□□ -1.79
PRPF38A-201ENST00000257181 KRTAP9-4Q9BYQ2 154 aa3.85□□□□□ -1.79
PRPF38A-201ENST00000257181 LCE1DQ5T752 114 aa3.85□□□□□ -1.79
PRPF38A-201ENST00000257181 LCE1BQ5T7P3 118 aa3.8□□□□□ -1.8
PRPF38A-201ENST00000257181 SYNE2Q8WXH0 6885 aaKnown RBP3.77□□□□□ -1.81
PRPF38A-201ENST00000257181 KRTAP4-3Q9BYR4 195 aa3.74□□□□□ -1.81
PRPF38A-201ENST00000257181 LOC100996750A0A140TA64 210 aa3.7□□□□□ -1.82
PRPF38A-201ENST00000257181 NEBP20929 6669 aa3.69□□□□□ -1.82
PRPF38A-201ENST00000257181 KRTAP9-9Q9BYP9 154 aa3.65□□□□□ -1.83
PRPF38A-201ENST00000257181 KRTAP4-9Q9BYQ8 210 aa3.62□□□□□ -1.83
PRPF38A-201ENST00000257181 KRTAP6-2Q3LI66 62 aa3.61□□□□□ -1.83
PRPF38A-201ENST00000257181 KRTAP6-1Q3LI64 71 aa3.59□□□□□ -1.83
PRPF38A-201ENST00000257181 SSPOA2VEC9 5147 aa3.59□□□□□ -1.84
PRPF38A-201ENST00000257181 FSIP2Q5CZC0 6907 aa3.58□□□□□ -1.84
PRPF38A-201ENST00000257181 PRM1P04553 51 aa3.48□□□□□ -1.85
PRPF38A-201ENST00000257181 KRTAP5-4Q6L8H1 288 aa3.44□□□□□ -1.86
PRPF38A-201ENST00000257181 USH2AO75445 5202 aa3.37□□□□□ -1.87
PRPF38A-201ENST00000257181 KRTAP20-2Q3LI61 65 aa3.37□□□□□ -1.87
PRPF38A-201ENST00000257181 LCE1CQ5T751 118 aa3.35□□□□□ -1.87
PRPF38A-201ENST00000257181 LCE1EQ5T753 118 aa3.35□□□□□ -1.87
PRPF38A-201ENST00000257181 LCE1FQ5T754 118 aa3.35□□□□□ -1.87
PRPF38A-201ENST00000257181 MUC2Q02817 5179 aa3.34□□□□□ -1.88
PRPF38A-201ENST00000257181 KRTAP9-6A8MVA2 160 aa3.21□□□□□ -1.89
PRPF38A-201ENST00000257181 KRTAP4-6Q9BYQ5 205 aa3.13□□□□□ -1.91
PRPF38A-201ENST00000257181 GPR98Q8WXG9 6306 aa3.1□□□□□ -1.91
PRPF38A-201ENST00000257181 FCGBPQ9Y6R7 5405 aaPredicted RBP3.08□□□□□ -1.92
PRPF38A-201ENST00000257181 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
PRPF38A-201ENST00000257181 KMT2DO14686 5537 aa3.04□□□□□ -1.92
PRPF38A-201ENST00000257181 MACF1Q9UPN3 7388 aaKnown RBP3.04□□□□□ -1.92
PRPF38A-201ENST00000257181 KRTAP5-3Q6L8H2 238 aa2.98□□□□□ -1.93
PRPF38A-201ENST00000257181 KRTAP5-5Q701N2 237 aaPredicted RBP2.96□□□□□ -1.94
PRPF38A-201ENST00000257181 SYNE1Q8NF91 8797 aaKnown RBP2.94□□□□□ -1.94
PRPF38A-201ENST00000257181 OBSCNQ5VST9 7968 aa2.94□□□□□ -1.94
PRPF38A-201ENST00000257181 MDN1Q9NU22 5596 aa2.92□□□□□ -1.94
PRPF38A-201ENST00000257181 AHNAK2Q8IVF2 5795 aa2.79□□□□□ -1.96
PRPF38A-201ENST00000257181 HMCN1Q96RW7 5635 aa2.78□□□□□ -1.96
PRPF38A-201ENST00000257181 MUC5ACP98088 5654 aa2.72□□□□□ -1.97
PRPF38A-201ENST00000257181 MUC12Q9UKN1 5478 aa2.69□□□□□ -1.98
PRPF38A-201ENST00000257181 DSTQ03001 7570 aaKnown RBP2.69□□□□□ -1.98
PRPF38A-201ENST00000257181 KRTAP5-2Q701N4 177 aa2.64□□□□□ -1.99
PRPF38A-201ENST00000257181 KRTAP5-8O75690 187 aa2.53□□□□□ -2
PRPF38A-201ENST00000257181 KRTAP4-12Q9BQ66 201 aa2.53□□□□□ -2.01
PRPF38A-201ENST00000257181 KRTAP4-2Q9BYR5 136 aa2.53□□□□□ -2.01
PRPF38A-201ENST00000257181 KRTAP5-7Q6L8G8 165 aa2.45□□□□□ -2.02
PRPF38A-201ENST00000257181 AHNAKQ09666 5890 aaKnown RBP2.42□□□□□ -2.02
PRPF38A-201ENST00000257181 KRTAP5-11Q6L8G4 156 aa2.35□□□□□ -2.03
PRPF38A-201ENST00000257181 KRTAP4-4Q9BYR3 166 aa2.34□□□□□ -2.03
PRPF38A-201ENST00000257181 KRTAP5-10Q6L8G5 202 aa2.32□□□□□ -2.04
PRPF38A-201ENST00000257181 PHGR1C9JFL3 82 aa2.3□□□□□ -2.04
PRPF38A-201ENST00000257181 MUC5BQ9HC84 5762 aaPredicted RBP2.23□□□□□ -2.05
PRPF38A-201ENST00000257181 KRTAP5-1Q6L8H4 278 aa2.19□□□□□ -2.06
PRPF38A-201ENST00000257181 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.17□□□□□ -2.06
PRPF38A-201ENST00000257181 MUC19Q7Z5P9 8384 aa2.04□□□□□ -2.08
PRPF38A-201ENST00000257181 KRTAP21-2Q3LI59 83 aa1.92□□□□□ -2.1
PRPF38A-201ENST00000257181 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
PRPF38A-201ENST00000257181 MUC16Q8WXI7 14507 aa1.38□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 61.5 ms