RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MT1EP04732 61 aa3.66□□□□□ -1.82
USP28-201ENST00000003302 MDN1Q9NU22 5596 aa3.66□□□□□ -1.82
USP28-201ENST00000003302 MACF1Q9UPN3 7388 aaKnown RBP3.64□□□□□ -1.83
USP28-201ENST00000003302 LCE2DQ5TA82 110 aaPredicted RBP3.61□□□□□ -1.83
USP28-201ENST00000003302 KRTAP2-3P0C7H8 128 aa3.6□□□□□ -1.83
USP28-201ENST00000003302 KRTAP2-4Q9BYR9 128 aa3.6□□□□□ -1.83
USP28-201ENST00000003302 KRTAP2-1Q9BYU5 128 aa3.6□□□□□ -1.83
USP28-201ENST00000003302 INE1O15225 51 aa3.6□□□□□ -1.83
USP28-201ENST00000003302 SYNE2Q8WXH0 6885 aaKnown RBP3.6□□□□□ -1.83
USP28-201ENST00000003302 CRCT1Q9UGL9 99 aa3.58□□□□□ -1.84
USP28-201ENST00000003302 MT1GP13640 62 aa3.56□□□□□ -1.84
USP28-201ENST00000003302 KRTAP19-6Q3LI70 58 aa3.52□□□□□ -1.85
USP28-201ENST00000003302 KRTAP4-9Q9BYQ8 210 aa3.43□□□□□ -1.86
USP28-201ENST00000003302 MT1MQ8N339 61 aa3.42□□□□□ -1.86
USP28-201ENST00000003302 KRTAP19-3Q7Z4W3 81 aa3.36□□□□□ -1.87
USP28-201ENST00000003302 SPRR2FQ96RM1 72 aa3.32□□□□□ -1.88
USP28-201ENST00000003302 LCE3BQ5TA77 95 aa3.31□□□□□ -1.88
USP28-201ENST00000003302 KRTAP12-4P60329 112 aa3.28□□□□□ -1.88
USP28-201ENST00000003302 LCE5AQ5TCM9 118 aa3.28□□□□□ -1.89
USP28-201ENST00000003302 KRTAP9-2Q9BYQ4 174 aa3.24□□□□□ -1.89
USP28-201ENST00000003302 KRTAP6-1Q3LI64 71 aa3.22□□□□□ -1.89
USP28-201ENST00000003302 KRTAP19-4Q3LI73 84 aa3.11□□□□□ -1.91
USP28-201ENST00000003302 KRTAP9-7A8MTY7 169 aa3.11□□□□□ -1.91
USP28-201ENST00000003302 KRTAP5-9P26371 169 aa3.07□□□□□ -1.92
USP28-201ENST00000003302 LCE1AQ5T7P2 110 aa3.07□□□□□ -1.92
USP28-201ENST00000003302 KRTAP5-5Q701N2 237 aaPredicted RBP3.04□□□□□ -1.92
USP28-201ENST00000003302 MT1AP04731 61 aa2.97□□□□□ -1.93
USP28-201ENST00000003302 LCE3DQ9BYE3 92 aa2.96□□□□□ -1.93
USP28-201ENST00000003302 PRM1P04553 51 aa2.94□□□□□ -1.94
USP28-201ENST00000003302 KRTAP9-6A0A140TA67 174 aa2.93□□□□□ -1.94
USP28-201ENST00000003302 SPRR2EP22531 72 aa2.93□□□□□ -1.94
USP28-201ENST00000003302 SPRR2BP35325 72 aa2.93□□□□□ -1.94
USP28-201ENST00000003302 SPRR2AP35326 72 aa2.93□□□□□ -1.94
USP28-201ENST00000003302 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.91□□□□□ -1.94
USP28-201ENST00000003302 LCE3EQ5T5B0 92 aa2.89□□□□□ -1.95
USP28-201ENST00000003302 KRTAP6-2Q3LI66 62 aa2.86□□□□□ -1.95
USP28-201ENST00000003302 KRTAP9-4Q9BYQ2 154 aa2.82□□□□□ -1.96
USP28-201ENST00000003302 KRTAP6-3Q3LI67 103 aa2.8□□□□□ -1.96
USP28-201ENST00000003302 NEBP20929 6669 aa2.79□□□□□ -1.96
USP28-201ENST00000003302 SPRR2DP22532 72 aa2.77□□□□□ -1.97
USP28-201ENST00000003302 KRTAP4-6Q9BYQ5 205 aa2.7□□□□□ -1.98
USP28-201ENST00000003302 HMCN1Q96RW7 5635 aa2.68□□□□□ -1.98
USP28-201ENST00000003302 KRTAP5-4Q6L8H1 288 aa2.64□□□□□ -1.99
USP28-201ENST00000003302 MT3P25713 68 aa2.62□□□□□ -1.99
USP28-201ENST00000003302 MT4P47944 62 aa2.62□□□□□ -1.99
USP28-201ENST00000003302 MUC5ACP98088 5654 aa2.57□□□□□ -2
USP28-201ENST00000003302 KRTAP2-2Q9BYT5 123 aa2.53□□□□□ -2.01
USP28-201ENST00000003302 KRTAP20-2Q3LI61 65 aa2.45□□□□□ -2.02
USP28-201ENST00000003302 KRTAP5-2Q701N4 177 aa2.45□□□□□ -2.02
USP28-201ENST00000003302 LCE1DQ5T752 114 aa2.42□□□□□ -2.02
USP28-201ENST00000003302 KRTAP5-3Q6L8H2 238 aa2.41□□□□□ -2.02
USP28-201ENST00000003302 KRTAP9-9Q9BYP9 154 aa2.4□□□□□ -2.03
USP28-201ENST00000003302 MUC19Q7Z5P9 8384 aa2.39□□□□□ -2.03
USP28-201ENST00000003302 LCE4AQ5TA78 99 aa2.34□□□□□ -2.03
USP28-201ENST00000003302 LCE1BQ5T7P3 118 aa2.32□□□□□ -2.04
USP28-201ENST00000003302 KRTAP4-11Q9BYQ6 195 aa2.31□□□□□ -2.04
USP28-201ENST00000003302 KRTAP20-1Q3LI63 56 aa2.29□□□□□ -2.04
USP28-201ENST00000003302 GPR98Q8WXG9 6306 aa2.25□□□□□ -2.05
USP28-201ENST00000003302 KRTAP5-10Q6L8G5 202 aa2.23□□□□□ -2.05
USP28-201ENST00000003302 LCE1EQ5T753 118 aa2.21□□□□□ -2.06
USP28-201ENST00000003302 MUC5BQ9HC84 5762 aaPredicted RBP2.19□□□□□ -2.06
USP28-201ENST00000003302 KRTAP4-2Q9BYR5 136 aa2.17□□□□□ -2.06
USP28-201ENST00000003302 KRTAP5-1Q6L8H4 278 aa2.14□□□□□ -2.07
USP28-201ENST00000003302 AHNAK2Q8IVF2 5795 aa2.09□□□□□ -2.07
USP28-201ENST00000003302 KRTAP4-4Q9BYR3 166 aa2.08□□□□□ -2.08
USP28-201ENST00000003302 KRTAP21-2Q3LI59 83 aa2.05□□□□□ -2.08
USP28-201ENST00000003302 KRTAP5-8O75690 187 aa2.03□□□□□ -2.08
USP28-201ENST00000003302 LCE1CQ5T751 118 aa2.01□□□□□ -2.09
USP28-201ENST00000003302 KRTAP4-12Q9BQ66 201 aa2.01□□□□□ -2.09
USP28-201ENST00000003302 KRTAP5-7Q6L8G8 165 aa1.94□□□□□ -2.1
USP28-201ENST00000003302 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.9□□□□□ -2.11
USP28-201ENST00000003302 LCE1FQ5T754 118 aa1.88□□□□□ -2.11
USP28-201ENST00000003302 KRTAP21-1Q3LI58 79 aa1.76□□□□□ -2.13
USP28-201ENST00000003302 KRTAP5-11Q6L8G4 156 aa1.73□□□□□ -2.13
USP28-201ENST00000003302 AHNAKQ09666 5890 aaKnown RBP1.71□□□□□ -2.13
USP28-201ENST00000003302 PHGR1C9JFL3 82 aa1.54□□□□□ -2.16
USP28-201ENST00000003302 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 118 ms