RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Q9CX25 107 aa12.62□□□□□ -0.39
Shh-201ENSMUST00000002708 Vsig4F6TUL9 280 aa12.62□□□□□ -0.39
Shh-201ENSMUST00000002708 P01801 115 aa12.62□□□□□ -0.39
Shh-201ENSMUST00000002708 Tmem136Q3TYE7 245 aa12.62□□□□□ -0.39
Shh-201ENSMUST00000002708 Map1lc3aQ91VR7 121 aa12.62□□□□□ -0.39
Shh-201ENSMUST00000002708 Erg28Q9ERY9 140 aa12.62□□□□□ -0.39
Shh-201ENSMUST00000002708 Ighv3-1A0A075B5S6 116 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm29289A0A087WPY7 166 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm4064A0A087WR82 380 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm10352B2RWR6 380 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Defa34D3Z0J0 93 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm21693J3QK27 380 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm5294J3QP53 216 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Rbmy1a1O35698 380 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Gpx1P11352 201 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 SbpP15501 199 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Lmo4P61969 165 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Vsig8Q6P3A4 417 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 MycbQ6P8Z1 170 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Ndufc2Q9CQ54 120 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Spcs1Q9D958 161 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Cnn3Q9DAW9 330 aaKnown RBP12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Hspb8Q9JK92 196 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 PspnO70300 156 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 ApomQ9Z1R3 190 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 CrygbP04344 175 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Rps20P60867 119 aaKnown RBP12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Nbl1Q61477 178 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Ufc1Q9CR09 167 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 AhspQ9CY02 102 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm26920S4R2A5 56 aa12.61□□□□□ -0.39
Shh-201ENSMUST00000002708 Tstd1E9PY03 133 aa12.6□□□□□ -0.39
Shh-201ENSMUST00000002708 Zfp493E9Q1L8 384 aa12.6□□□□□ -0.39
Shh-201ENSMUST00000002708 Ccdc71lE9Q4T4 218 aa12.6□□□□□ -0.39
Shh-201ENSMUST00000002708 Ly6lH3BJG9 140 aa12.6□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm10118Q8C8J5 116 aa12.6□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm9242J3QNY1 357 aa12.6□□□□□ -0.39
Shh-201ENSMUST00000002708 Cby1Q9D1C2 127 aa12.6□□□□□ -0.39
Shh-201ENSMUST00000002708 H2al2bA9Z055 111 aa12.59□□□□□ -0.39
Shh-201ENSMUST00000002708 Olfr553Q7TRS6 326 aa12.59□□□□□ -0.39
Shh-201ENSMUST00000002708 Ube2tQ9CQ37 204 aa12.59□□□□□ -0.39
Shh-201ENSMUST00000002708 Gtsf1lQ9CWD0 151 aa12.59□□□□□ -0.39
Shh-201ENSMUST00000002708 8030423J24RikQ9CX45 142 aa12.59□□□□□ -0.39
Shh-201ENSMUST00000002708 Wfdc15bQ9JHY4 80 aa12.59□□□□□ -0.39
Shh-201ENSMUST00000002708 Igkv4-90A0A075B5L3 117 aa12.59□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm20517G3UVU6 152 aa12.59□□□□□ -0.39
Shh-201ENSMUST00000002708 Tcl1b4P56844 120 aa12.59□□□□□ -0.39
Shh-201ENSMUST00000002708 Slc16a4Q8R0M8 500 aa12.59□□□□□ -0.39
Shh-201ENSMUST00000002708 Prss41Q920S2 322 aa12.59□□□□□ -0.39
Shh-201ENSMUST00000002708 Gm26602M0QWA4 95 aa12.58□□□□□ -0.4
Shh-201ENSMUST00000002708 Tdgf1P51865 171 aa12.58□□□□□ -0.4
Shh-201ENSMUST00000002708 Ociad2Q9D8W7 154 aa12.58□□□□□ -0.4
Shh-201ENSMUST00000002708 AcacbE9Q4Z2 2448 aa12.58□□□□□ -0.4
Shh-201ENSMUST00000002708 TcraP01849 138 aa12.58□□□□□ -0.4
Shh-201ENSMUST00000002708 H2-DMb1P35737 261 aa12.58□□□□□ -0.4
Shh-201ENSMUST00000002708 Znhit3Q9CQK1 151 aa12.58□□□□□ -0.4
Shh-201ENSMUST00000002708 OtoglF7A4A7 2325 aa12.58□□□□□ -0.4
Shh-201ENSMUST00000002708 Edn3P48299 214 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 Khdc1aQ3UWR2 166 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 Ndufa4l2Q4FZG9 87 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 Htr1dQ61224 374 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 Fmc1Q9CR13 113 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 Bub3Q9WVA3 326 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 Itpr3P70227 2670 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 P06330 118 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 Smim15Q3UTD9 74 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 Ang2Q64438 145 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 Trav16d-dv11A0A075B617 117 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 Gm5941Q497P9 117 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 OtorQ9JIE3 128 aa12.57□□□□□ -0.4
Shh-201ENSMUST00000002708 Olfr498Q8VEW2 330 aa12.56□□□□□ -0.4
Shh-201ENSMUST00000002708 Gm28038F7BCN9 126 aa12.56□□□□□ -0.4
Shh-201ENSMUST00000002708 7420426K07RikQ3UX66 186 aa12.56□□□□□ -0.4
Shh-201ENSMUST00000002708 Gm16223Q8CBM3 117 aa12.56□□□□□ -0.4
Shh-201ENSMUST00000002708 TdhQ8K3F7 373 aa12.56□□□□□ -0.4
Shh-201ENSMUST00000002708 Olfr1209Q3SXJ3 310 aa12.55□□□□□ -0.4
Shh-201ENSMUST00000002708 Rpl24Q8BP67 157 aaKnown RBP12.55□□□□□ -0.4
Shh-201ENSMUST00000002708 Gm5464Q3UY29 175 aa12.55□□□□□ -0.4
Shh-201ENSMUST00000002708 Khdc1cQ4KL78 166 aa12.55□□□□□ -0.4
Shh-201ENSMUST00000002708 Il22ra1Q80XZ4 581 aa12.55□□□□□ -0.4
Shh-201ENSMUST00000002708 Arhgap32Q811P8 2089 aa12.55□□□□□ -0.4
Shh-201ENSMUST00000002708 Dido1Q8C9B9 2256 aaKnown RBP12.54□□□□□ -0.4
Shh-201ENSMUST00000002708 Spock3Q8BKV0 436 aa12.54□□□□□ -0.4
Shh-201ENSMUST00000002708 1700056E22RikF7CNM6 234 aa12.54□□□□□ -0.4
Shh-201ENSMUST00000002708 BatfO35284 125 aa12.54□□□□□ -0.4
Shh-201ENSMUST00000002708 P01724 129 aa12.54□□□□□ -0.4
Shh-201ENSMUST00000002708 P01727 129 aa12.54□□□□□ -0.4
Shh-201ENSMUST00000002708 Gng4P50153 75 aa12.54□□□□□ -0.4
Shh-201ENSMUST00000002708 Pip4p1Q3TWL2 284 aa12.54□□□□□ -0.4
Shh-201ENSMUST00000002708 Foxc2Q61850 494 aa12.54□□□□□ -0.4
Shh-201ENSMUST00000002708 Cela2aP05208 271 aa12.53□□□□□ -0.4
Shh-201ENSMUST00000002708 Taf15Q8BQ46 557 aaKnown RBP12.53□□□□□ -0.4
Shh-201ENSMUST00000002708 Q9D727 114 aa12.53□□□□□ -0.4
Shh-201ENSMUST00000002708 Trav19A0A0B4J1K4 119 aa12.53□□□□□ -0.4
Shh-201ENSMUST00000002708 Sap30O88574 220 aa12.53□□□□□ -0.4
Shh-201ENSMUST00000002708 Odf3Q920N1 254 aa12.53□□□□□ -0.4
Shh-201ENSMUST00000002708 Prpf8Q99PV0 2335 aaKnown RBP12.53□□□□□ -0.4
Shh-201ENSMUST00000002708 Ep300B2RWS6 2412 aa12.52□□□□□ -0.4
Shh-201ENSMUST00000002708 Ighv1-4A0A075B5T4 117 aa12.52□□□□□ -0.4
Shh-201ENSMUST00000002708 Igkv4-59A0A0B4J1I8 117 aa12.52□□□□□ -0.4
Retrieved 100 of 22,080 RNA–protein pairs in 80.3 ms